| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN015L20 | Sequence | 594 | 013030 (6) | gb|KJB54618.1| | 2e-79 | hypothetical protein B456_009G041700 [Gossypium raimondii] | |||||
| JMFN038I19 | Sequence | 621 | 013030 (6) | ref|XP_003633111.1| | 6e-82 | PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Vitis vinifera] emb|CBI2 | |||||
| JMSF010O19 | Sequence | 228 | 013030 (6) | gb|KCW81786.1| | 2e-20 | hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis] | |||||
| JMSF044B02 | Sequence | 764 | 013030 (6) | ref|XP_002516111.1| | 2e-105 | DNA binding protein, putative [Ricinus communis] gb|EEF46113.1| DNA binding prot | 835 | 015149 | ref|XP_009619795.1| | 261 | PREDICTED: PHD finger protein ALFIN-LIKE 4-like, partial [Nicotiana tomentosifo |
| JMSF045H19 | Sequence | 795 | 013030 (6) | ref|XP_002516111.1| | 8e-97 | DNA binding protein, putative [Ricinus communis] gb|EEF46113.1| DNA binding prot | 691 | 013030 (6) | ref|XP_011078057.1| | 249 | PREDICTED: PHD finger protein ALFIN-LIKE 4-like [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF045H19- ATTATCCTGATAAACAAGAGTTATGGGC
____________________________________________________________
consensus ATTATCCTGATAAACAAGAGTTATGGGC
. : . : . : . : . : . :
rJMSF045H19- CGAAACTTCAATACACATGCCTAGCAGTTATGGGGGATGGCAGATGAGATGTTTAGGTGA
____________________________________________________________
consensus CGAAACTTCAATACACATGCCTAGCAGTTATGGGGGATGGCAGATGAGATGTTTAGGTGA
. : . : . : . : . : . :
rJMSF045H19- GCCGAAATAAGACAATTACAGTTAAGTGAAGCGTAGCACTTGTAGGGAATATCAAGGCCG
____________________________________________________________
consensus GCCGAAATAAGACAATTACAGTTAAGTGAAGCGTAGCACTTGTAGGGAATATCAAGGCCG
. : . : . : . : . : . :
rJMSF045H19- TGGCCTCTTGTTGCTGCATGATGGGCATTTGTACTGCTTTATGTGTTCAGCCC-GGGCAG
JMSF045H19+ TGCATGATGGGCATTTGTACTGCTTTATGTGTTCAGCCCGGGGCAG
____________________________________________________________
consensus TGGCCTCTTGTTGCTGCATGATGGGCATTTGTACTGCTTTATGTGTTCAGCCCGGGGCAG
. : . : . : . : . : . :
rJMSF045H19- GGGTGATCTTCACACACTTG-CCATGGAACCACCTCTCACATATGTCGCAGCAAATCCAG
JMSF045H19+ GGGTGATCTTCACACACTTGNCCATGGAACCACCTCTCACATATGTCGCAGCAAATCCAG
JMSF044B02+ CCATGGAACCACCTCTCACATATGTCGCAGCAAATCCAG
____________________________________________________________
consensus GGGTGATCTTCACACACTTGNCCATGGAACCACCTCTCACATATGTCGCAGCAAATCCAG
. : . : . : . : . : . :
rJMSF045H19- AATTCATCTGACGCGTAGTTCTCACCACAAGCTCCACACAAGGTATCACCGTGCTCGTCT
JMSF045H19+ AATTCATCTGACGCGTAGTTCTCACCACAAGCTCCACACAAGGTATCACCGTGCTCGTCT
JMSF044B02+ AATTCATNTGACGCGTAGTTCTCACCACAAGCTCCACACAAGGTATCACCGTGCTCGTCT
JMFN038I19+ CAAGGTATCACCGTGCTCGTC-
____________________________________________________________
consensus AATTCATCTGACGCGTAGTTCTCACCACAAGCTCCACACAAGGTATCACCGTGCTCGTCT
. : . : . : . : . : . :
rJMSF045H19- TCTTCTTCATCAAATCCATCCTCCTCATCCTTTGCTTGGACTTTTGAGTACTTAACCGGT
JMSF045H19+ TCTTCTTCATCAAATCCATCCTCCTCATCCTTTGCTTGGACTTTTGAGTACTTAACCGGT
JMSF044B02+ TCTTCTTCATCAAATCCATCCTCCTCATCCTTTGCTTGGACTTTTGAGTACTTAACCGGT
JMFN038I19+ TCTTCTTCATCAAATCCATCCTCCTCATCCTTTGCTTGGACTTNTGAGTACTTAACCGGT
JMFN015L20+ TCATCAAATCCATCCTCCTCATCCTTTGCTTGGACTTTTGAGTACTTAACCGGT
____________________________________________________________
consensus TCTTCTTCATCAAATCCATCCTCCTCATCCTTTGCTTGGACTTTTGAGTACTTAACCGGT
. : . : . : . : . : . :
rJMSF045H19- TTAGGATTTGACTTGGACTTGTTGTTGCTGCTATTATTTGTGACAGATGACTTTTCCTTT
JMSF045H19+ TTAGGATTTGACTTGGACTTGTTGTTGCTGCTATTATTTGTGACAGATGACTTTTCCTTT
JMSF044B02+ TTAGGATTTGACTTGGACTTGTTGTTGCCGCTATTATTTGTGACAGATGACTTTTCCTTT
JMFN038I19+ TTAGGATTTGACTTGGACTTGTTGTTGCTGCTATTATTTGTGACAGATGACTTTTCCTTT
JMFN015L20+ TTAGGATTTGACTTGGACTTGTTGTTGCTGCTATTATTTGTGACAGATGACTTTTCCTTT
____________________________________________________________
consensus TTAGGATTTGACTTGGACTTGTTGTTGCTGCTATTATTTGTGACAGATGACTTTTCCTTT
. : . : . : . : . : . :
rJMSF045H19- ACTTGTTTTTTAGCAGCTCCAGTCACAACTTCAAAGATTGTAGGAAGATCATTTATCATA
JMSF045H19+ ACTTGTTTTTTAGCAGCTCCAGTCACAACTTCAAAGATTGTAGGAAGATCATTTATCATA
JMSF044B02+ ACTTGTTTTTTAGCAGCTCCAGTCACAACTTCAAAGATTGTAGGAAGATCATTTATCATA
JMFN038I19+ ACTTGTTTTTTAGCAGCTCCAGTCACAACTTCAAAGATTGTAGGAAGATCATTTATCATA
JMFN015L20+ ACTTGTTTTTTAGCAGCTCCAGTCACAACTTCAAAGATTGTAGGAAGATCATTTATCATA
____________________________________________________________
consensus ACTTGTTTTTTAGCAGCTCCAGTCACAACTTCAAAGATTGTAGGAAGATCATTTATCATA
. : . : . : . : . : . :
rJMSF045H19- TTGAAGAGGCGCTTCCTGTCAGCTTTGTCAAAACCAAATCTTGCACCAAAATAGAAGGCA
JMSF045H19+ TTGAAGAGGCGCTTCCTGTCAGCTTTGTCAAAACCAAATCTTGCACCAAAATAGAAGGCA
JMSF044B02+ TTGAAGAGGCGCTTCCTGTCAGCTTTGTCAAAACCAAATCTTGCACCAAAATAGAAGGCA
JMFN038I19+ TTGAAGAGGCGCTTCCTGTCAGCTTTGTCAAAACCAAATCTTGCACCAAAATAGAAGGCA
JMFN015L20+ TTGAAGAGGCGCTTCCTGTCAGCTTTGTCAAAACCAAATCTTGCACCAAAATAGAAGGCA
____________________________________________________________
consensus TTGAAGAGGCGCTTCCTGTCAGCTTTGTCAAAACCAAATCTTGCACCAAAATAGAAGGCA
. : . : . : . : . : . :
rJMSF045H19- ACTGAAAGTAGCCATGCATCGCTATGAACAGCAACGAGAGCCAACCAGTCCTTTTCTTGC
JMSF045H19+ ACTGAAAGTAGCCATGCATCGCTATGAACAGCAACGAGAGCCAACCAGTCCTTTTCTTGC
JMSF044B02+ ACTGAAAGTAGCCATGCATCGCTATGAACAGCAACGAGAGCCAACCAGTCCTTTTCTTGC
JMFN038I19+ ACTGAAAGTAGCCATGCATCGCTATGAACAGCAACGAGAGCCAACCAGTCCTTTTCTTGC
JMFN015L20+ ACTGAAAGTAGCCATGCATCGCTATGAACAGCAACGAGAGCCAACCAGTCCTTTTCTTGC
____________________________________________________________
consensus ACTGAAAGTAGCCATGCATCGCTATGAACAGCAACGAGAGCCAACCAGTCCTTTTCTTGC
. : . : . : . : . : . :
rJMSF045H19- ATCCCATCTCTGGCAAAGTTGATACCTAATGCTGGTTCTGGAAGTTCAGGTGGGACCTCT
JMSF045H19+ ATCCCATCTCTGGCAAAGTTGATACCTAATGCTGGTTCTGGAAGTTCAGGTGGGACCTCT
JMSF044B02+ ATCCCATCTCTGGCAAAGTTGATACCTAATGCTGGTTCTGGAAGTTCAGGTGGGAACTCT
JMFN038I19+ ATCCCATCTCTGGCAAAGTTGATACCTAATGCTGGTTCTGGAAGTTCAGGTGGGACCTCT
JMFN015L20+ ATCCCATCTCTGGCAAAGTTGATACCTAATGCTGGTTCTGGAAGTTCAGGTGGGACCTCT
____________________________________________________________
consensus ATCCCATCTCTGGCAAAGTTGATACCTAATGCTGGTTCTGGAAGTTCAGGTGGGACCTCT
. : . : . : . : . : . :
rJMSF045H19- TCAGC
JMSF045H19+ TCAGCAGGTAAATTAACTTCCCACAGCTCACTTGGAAATCCATAGAGACAAAGATTCTCC
JMSF044B02+ TCAGCAGGTAAATTAACTTCCCACAGCTCACTTGGAAATCCATAGAGACAAAGATTCTCC
JMFN038I19+ TCAGCAGGTAAATTAACTTCCCACAGCTCACTTGGAAATCCATAGAGACAAAGATTCTCC
JMFN015L20+ TCAGCAGGTAAATTAACTTCCCACAGCTCACTTGGAAATCCATAGAGACAAAGATTCTCC
____________________________________________________________
consensus TCAGCAGGTAAATTAACTTCCCACAGCTCACTTGGAAATCCATAGAGACAAAGATTCTCC
. : . : . : . : . : . :
JMSF010O19+ CCGGGTCACACTGCTGATAAAAATCCTCGACATCCGTAGTAAGGGCCTTGATCATT
JMSF045H19+ TTCTCCGGGTCACACTGCTGATAAAAATCCTCGACATCCGTAGTAAGGGCCTTGATCATT
JMSF044B02+ TTCTCCGGGTCACACTGCTGATAAAAATCCTCGACATCCGTAGTAAGGGCCTTGATCATT
JMFN038I19+ TTCTCCGGGTCACACTGCTGATAAAAATCCTCGACATCCGTAGTAAGGGCCTTGATCATT
JMFN015L20+ TTCTCCGGGTCACACTGCTGATAAAAATCCTCGACATCCGTAGTAAGGGCCTTGATCATT
____________________________________________________________
consensus TTCTCCGGGTCACACTGCTGATAAAAATCCTCGACATCCGTAGTAAGGGCCTTGATCATT
. : . : . : . : . : . :
JMSF010O19+ CCAGCACGGCGGCCCTTGTAATCCCTAAAGACCTCCTCTACCGTCCGAGGATTGTGCTGT
JMSF045H19+ CCAGCACGGCGGCCCTTGTAATCCCTAAAGACCTCCTCTACCGTCCGAGGATTGTGCTGT
JMSF044B02+ CCAGCACGGCGGCCCTTGTAATCCCTAAAGACCTCCTCTACCGTCCGAGGATTGTGCTGT
JMFN038I19+ CCAGCACGGCGGCCCTTGTAATCCCTAAAGACCTCCTCTACCGTCCGAGGATTGTGCTGT
JMFN015L20+ CCAGCACGGCGGCCCTTGTAATCCCTAAAGACCTCCTCTACCGTCCGAGGATTGTGCTGT
____________________________________________________________
consensus CCAGCACGGCGGCCCTTGTAATCCCTAAAGACCTCCTCTACCGTCCGAGGATTGTGCTGT
. : . : . : . : . : . :
JMSF010O19+ GCGCCTCCGTCCATT
JMSF045H19+ GCGCCTCCGTCCATT
JMSF044B02+ GCGCCTCCGTCCATT
JMFN038I19+ GCGCCTCCGTCCATTGCCTTTCTTCCTCGGCTTCTCTCAACAACACACTCGGAAAACAAA
JMFN015L20+ GCGCCTCCGTCCATTGCCTTTCTTCCTCGGCTTCTCTCAACAACACACTCGGAAAACAAA
____________________________________________________________
consensus GCGCCTCCGTCCATTGCCTTTCTTCCTCGGCTTCTCTCAACAACACACTCGGAAAACAAA