| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008L02 | Sequence | 694 | 013024 (6) | ref|XP_009119727.1| | 8e-47 | PREDICTED: acyl-coenzyme A thioesterase 8 isoform X2 [Brassica rapa] | |||||
| JMFF013H24 | Sequence | 326 | 004511 (2) | 703 | 013024 (6) | ref|XP_009119726.1| | 2e-60 | PREDICTED: acyl-coenzyme A thioesterase 8 isoform X1 [Brassica rapa] | |||
| JMFF030I22 | Sequence | 350 | 004511 (2) | 513 | 013024 (6) | ref|XP_010479876.1| | 1e-24 | PREDICTED: acyl-coenzyme A thioesterase 8-like [Camelina sativa] | |||
| JMFF040M10 | Sequence | 564 | 010841 (4) | ref|XP_009605511.1| | 2e-82 | PREDICTED: acyl-coenzyme A thioesterase 8-like isoform X2 [Nicotiana tomentosif | 765 | 013024 (6) | ref|XP_009119726.1| | 5e-74 | PREDICTED: acyl-coenzyme A thioesterase 8 isoform X1 [Brassica rapa] |
| JMFN013D01 | Sequence | 617 | 013024 (6) | ref|XP_010479876.1| | 3e-26 | PREDICTED: acyl-coenzyme A thioesterase 8-like [Camelina sativa] | |||||
| JMSF039P03 | Sequence | 679 | 010841 (4) | emb|CDP08822.1| | 4e-107 | unnamed protein product [Coffea canephora] | 888 | 013024 (6) | gb|AIL29214.1| | 9e-93 | acyl-CoA thioesterase [Camellia oleifera] |
This contig is upended
. : . : . : . : . : . :
rJMSF039P03+ TTGCTTCATTTCAGAAAGAAGAAGAAGGATTTGATCAC
____________________________________________________________
consensus TTGCTTCATTTCAGAAAGAAGAAGAAGGATTTGATCAC
. : . : . : . : . : . :
rJMSF039P03+ CAGGAAGCATTAAAGCCTAATGTGCCAGATCCAGAAACGCTTTTTATCCATGGAAGAGAT
____________________________________________________________
consensus CAGGAAGCATTAAAGCCTAATGTGCCAGATCCAGAAACGCTTTTTATCCATGGAAGAGAT
. : . : . : . : . : . :
rJMSF039P03+ ACGCGAAAGACGTATGACCGATCCTCGTCTTCCCAGGACCTATAGGAACAAGGTAGCTAC
rJMFF040M10+ CTAC
____________________________________________________________
consensus ACGCGAAAGACGTATGACCGATCCTCGTCTTCCCAGGACCTATAGGAACAAGGTAGCTAC
. : . : . : . : . : . :
rJMSF039P03+ TAAAAAATTTGTTCCATGGCCAATAGAGATTCGGTTCTGTGATCCTAATACTGCCACCAG
rJMFF013H24+ CCAG
rJMFF040M10+ TAAAAAATTTGTTCCATGGCCAATAGAGATTCGGTTCTGTGATCNTAATACTGCCACCAG
____________________________________________________________
consensus TAAAAAATTTGTTCCATGGCCAATAGAGATTCGGTTCTGTGATCCTAATACTGCCACCAG
. : . : . : . : . : . :
rJMSF039P03+ CCAGACCAAGAGTCCTCCAAGTTTGAGATACTGGTTTAGAGCTAAGGGAAAACTTT-CTG
rJMFF013H24+ CCAGACCAAGAGTCCTCCAAGTTTGAGATACTGGTTTAGAGCTAAGGGAAAACTTT-CTG
rJMFF008L02+ CCAAGAGTCCTCCAAGTTNGAGATACTGGTTTAGAGCTAAGGGAAAACTTTNCTG
rJMFF040M10+ CCAGACCAAGAGTCCTCCAAGTTTGAGATACTGGTTTAGAGCTAAGGGAAAACTTT-CTG
____________________________________________________________
consensus CCAGACCAAGAGTCCTCCAAGTTTGAGATACTGGTTTAGAGCTAAGGGAAAACTTT-CTG
. : . : . : . : . : . :
rJMSF039P03+ ATGATCAAGCTTTGCACAGGTGTGTTGTGGCGTTTGCATCAGATCTTATCTTTGCTAGTG
rJMFF013H24+ ATGATCAAGCTTTGCACAGGTGTGTTGTGGCGTTTGCATCAGATCTTATCTTTGCTAGTG
rJMFF008L02+ ATGATCAAGCTTTGCACAGGTGTGTTGTGGCGTTTGCATCGGATCTTATCTTTNCTAGTG
rJMFF040M10+ ATGATCAAGCTTTGCACAGGTGTGTTGTGGCGTTTGCATCGGATCTTATCTTTGCTAGTG
____________________________________________________________
consensus ATGATCAAGCTTTGCACAGGTGTGTTGTGGCGTTTGCATCGGATCTTATCTTTGCTAGTG
. : . : . : . : . : . :
rJMSF039P03+ TAAGTACGAACCCTCATCGCAGGAAAGACCTGAAGACTGCTTCTGTTAGTCTAGATCACA
rJMFF030I22+ TTCTGTTAGTCTAGATCACA
rJMFF013H24+ TAAGTACGAACCCTCATCGCAGGAAAGACCTGAAGACTGCTTCTGTTAGTCTAGATCACA
rJMFF008L02+ TAAGTACGAACCCTCATCGCAGGAAAGACCTGAAGACTGCTTCTGTTAGTCTAGATCACA
rJMFF040M10+ TAAGTACGAACCCTCATCGCAGGAAAGACCTGAAGACTGCTTCTGTTAGTCTAGATCACA
JMFN013D01+ CTGTTAGTCTAGATCACA
____________________________________________________________
consensus TAAGTACGAACCCTCATCGCAGGAAAGACCTGAAGACTGCTTCTGTTAGTCTAGATCACA
. : . : . : . : . : . :
rJMSF039P03+ CGATGTGGTTCCATAGACCTCTTCGGGCTGATGATTGGATATTGTTTGTGATTAAGAGTC
rJMFF030I22+ CGATGTGGTTCCATAGACCTCTTCGGGCTGATGATTGGATATTGTTNGTGATTAAGAGTC
rJMFF013H24+ CGATGTGGTTCCATAGACCTCTTCGGGCTGATGATTGGATATTGTTTGTGATTAAGAGTC
rJMFF008L02+ CGATGTGGTTCCATAGACCTCTTCGGGCTGATGATTGGATATTGTTTGTGATTAAGAGTC
rJMFF040M10+ CGATGTGGTTCCATAGACCTCTTCGGGCTGATGATTGGATATTGTTTGTGATTAAGAGTC
JMFN013D01+ CGATGTGGTTCCATAGACCTCTTCGGGCTGATGATTGGATATTGTTTGTGATTAAGAGTC
____________________________________________________________
consensus CGATGTGGTTCCATAGACCTCTTCGGGCTGATGATTGGATATTGTTTGTGATTAAGAGTC
. : . : . : . : . : . :
rJMSF039P03+ CTTCTGCATACAATGTACGCGGTTTTGTTTCCGGGGAAATGTTTGACAGGAAAGGAACGC
rJMFF030I22+ NTTNTGCATACAATGTACGCGGTTTTGTTTCCGGGGAAATGTTCGACAGGAAAGGAACGC
rJMFF013H24+ NTTCTGCATACAATGTACGCGGTTTTGTTTCCGGGGAAATGTTNGACAGGAAAGGAACGC
rJMFF008L02+ CTTCTGCATACAATGTACGCGGTTTTGTTTCCGGGGAAATGTTTGNCAGGAAAGGAACGC
rJMFF040M10+ CTTCTGCATACAATGTACGCGGTTTTGTTTCCGGGGAAATGTTTGACAGGAAAGGAACGC
JMFN013D01+ CTTCTGCATACAATGTACGCGGTTTTGTTTCCGGGGAAATGTTTGACAGGAAAGGAACGC
____________________________________________________________
consensus CTTCTGCATACAATGTACGCGGTTTTGTTTCCGGGGAAATGTTTGACAGGAAAGGAACGC
. : . : . : . : . : . :
rJMSF039P03+ TTGTGGTATCGCTTACTCAAGAGGCGTTACAGAGGATGGTGAGGCCCCATAAGCCCGTTG
rJMFF030I22+ TTGTGGTATCGCTTACTCAAGAGGCGTTACAGAGGATGGTGAGGCCCCATAAGCCCGTTG
rJMFF013H24+ TTGTGGTATCGCTTACTCAAGAGGCGTTACAGAGGATGGTGAGGCCCCATAAGCCCGTTG
rJMFF008L02+ TTGTGGTATCGCTTACTCAAGAGGCGTTACAGAGGATGGNGAGGCCCCATAAGCCCGTTG
rJMFF040M10+ TTGTGGTATCGCTTACTCAAGAGGCGTTACAGAGGATGGTGAGGCCCCATAAGCCCGTTG
JMFN013D01+ TTGTGGTATCGCTTACTCAAGAGGCGTTACAGAGGATGGTGAGGCCCCATAAGCCCGTTG
____________________________________________________________
consensus TTGTGGTATCGCTTACTCAAGAGGCGTTACAGAGGATGGTGAGGCCCCATAAGCCCGTTG
. : . : . : . : . : . :
rJMSF039P03+ TCCAGTCCAAGCTGTAAAACTCGGTTTCAGCTACTATACAGCTGATGTACGCTGTGAGGA
rJMFF030I22+ TCCAGTCCAAGCNGTANANCTCGGTTTCAGCTACTATACAGNTGANGTACGCTGTGAGGA
rJMFF013H24+ TCCAGTCCAAGCTGTAAANCTCGGTTTCAGCTACTATACAGNTGANGTACGCTGTGAGGA
rJMFF008L02+ TCCAGTCCAAGCTGTAAAACTCGGTTTCAGCTACTATACAGCTGATGTACGCTGTGAGGA
rJMFF040M10+ TCCAGTCCAAGCTGTAAAACTCGGTTTCAGCTACTATACAGCTGATGTACGCTGTGAGGA
JMFN013D01+ TCCAGTCCAAGCTGTAAAACTCGGTTTCAGCTACTATACAGCTGATGTACGCTGTGAGGA
____________________________________________________________
consensus TCCAGTCCAAGCTGTAAAACTCGGTTTCAGCTACTATACAGCTGATGTACGCTGTGAGGA
. : . : . : . : . : . :
rJMSF039P03+ GAGTCGGGAATGAAATCTTTCACTTCTGGGAAATACGTATTCTCGAAATATTGATCATCA
rJMFF030I22+ GAGTCGGGAANGAAATCTTTCACTTCTGGGAAATACGTATTCTCGAAATATTGATCATCA
rJMFF013H24+ GAGTCGGGAATGAAATCTTTCACTTCTGGGAAATACGTATTCTNGAAATATTGATCATCA
rJMFF008L02+ GAGTCGGGAATGAAATCTTTCACTTCTGGGAAATACGTATTCTNGAAATANTGATCATCA
rJMFF040M10+ GAGTCGGGAATGAAATCTTTCACTTCTGGGAAATACGTATTCTCGAAATATTGATCATCA
JMFN013D01+ GAGTCGGGAATGAAATCTTTCACTTCTGGGAAATACGTATTCTCGAAATATTGATCATCA
____________________________________________________________
consensus GAGTCGGGAATGAAATCTTTCACTTCTGGGAAATACGTATTCTCGAAATATTGATCATCA
. : . : . : . : . : . :
rJMSF039P03+ CTCATCAAAGAAACGCGGTTAGTGCCACGGATTTCTTGATTTTATTTTACACTTCAACTT
rJMFF030I22+ CTCATCAAAGAAACGCGGTTAGTGCCACGGATTTCTTGATTTTATTTTACACTTCAACTT
rJMFF013H24+ CTCATCAAAGAAACGCGGTTAGTGCCACGGATTTCTTGATTTTATTTTACACTTCAACTT
rJMFF008L02+ CTCATCAAAGAAACGCGGTTAGTGCCACGGATTTCTNGATTTTATTTTACACTTCAACTT
rJMFF040M10+ CTCATCAAAGAAACGCGGTTAGTGCCACGGATTTCTTGATTTTATTTTACACTTCAACTT
JMFN013D01+ CTCATCAAAGAAACGCGGTTAGTGCCACGGATTTCTTGATTTTATTTTACACTTCAACTT
____________________________________________________________
consensus CTCATCAAAGAAACGCGGTTAGTGCCACGGATTTCTTGATTTTATTTTACACTTCAACTT
. : . : . : . : . : . :
rJMSF039P03+ CATCAACCAAGGCAAAGACATAATGCAGGAAATAAATTCTTCCTGGTTATATGGTTTTTT
rJMFF030I22+ CATCAACCAAGGCAAAGACATAATGCAGGAAATAAATTNTTCCTGGTTATATGGTTTTTT
rJMFF013H24+ CATCAACCAAGGCAAAGACATAATGCAGGAAATAAATTCTTCCTGGTTATATGGTTTTTT
rJMFF008L02+ CATCAACCAAGGCAAAGACATAATGCAGGAAATAAATTCTTCCTGGTTATATGGTTTTTT
rJMFF040M10+ CATCAACCAAGGCAAAGACATAATGCAGGAAATAAATTCTTCCTGGTTATATGGTTTTTT
JMFN013D01+ CATCAACCAAGGCAAAGACATAATGCAGGAAATAAATTCTTCCTGGTTATATGGTTTTTT
____________________________________________________________
consensus CATCAACCAAGGCAAAGACATAATGCAGGAAATAAATTCTTCCTGGTTATATGGTTTTTT
. : . : . : . : . : . :
rJMSF039P03+ ATTCTACTTTTATACTGCGTTATAGTGTGGAC-TAGTTGCTTTGTACACTATGGAAAACA
rJMFF030I22+ ATTCTACTTNTATACTGCGTTATAGTGTGGCACTAGTTGCTTTGTACACTATGGAAAACA
rJMFF013H24+ ATTCTACTTTTATACTGCGTTATAGTGTGGACGTAGTTGCTTTGTACACTATGGAAAACA
rJMFF008L02+ ATTNTACNTTTATACTGCGTTATAGTGTGGAN-TAGTTGCTTTGTACACTATGGAAAACA
rJMFF040M10+ ATTCTACTTTTATACTGCGTTATAGTGTGGAC-TAGTTGCTTTGTACACTATGGAAAACA
JMFN013D01+ ATTCTACTTTTATACTGCGTTATAGTGTGGAC-TAGTTGCTTTGTACACTATGGAAAACA
____________________________________________________________
consensus ATTCTACTTTTATACTGCGTTATAGTGTGGAC-TAGTTGCTTTGTACACTATGGAAAACA
. : . : . : . : . : . :
rJMSF039P03+ TAGAATATATCG
rJMFF030I22+ TAGAATATATCGT
rJMFF013H24+ TAGAATATATCGTGTATCAGACGTATCCGGNAAGAGATAA
rJMFF008L02+ TAGAATATATCGTGTATCAGACGTATCCGGTAAGAGATAA
rJMFF040M10+ TAGAATATATCGTGTATCAGACGTATCCGGTAAGAGATAA
JMFN013D01+ TAGAATATATCGTGTATCAGACGTATCCGGTAAGAGATAATATTATAAATGCTCATCAGA
____________________________________________________________
consensus TAGAATATATCGTGTATCAGACGTATCCGGTAAGAGATAATATTATAAATGCTCATCAGA
. : . : . : . : . : . :
JMFN013D01+ GTTGCATTCTATGTTCXXXXXXXXXXXXXXXXXXCTCGAGACTAGTTCTCTCTCTCTCTC
____________________________________________________________
consensus GTTGCATTCTATGTTCNNNNNNNNNNNNNNNNNNCTCGAGACTAGTTCTCTCTCTCTCTC