Contig 013012:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN007C07Sequence622013012 (5)gb|KDP43450.1|2e-59hypothetical protein JCGZ_16737 [Jatropha curcas]
JMFN032L17Sequence315013012 (5)ref|XP_004246531.1|5e-06PREDICTED: probable U6 snRNA-associated Sm-like protein LSm7 isoform X2 [Solanu
JMFS028C10Sequence611013012 (5)gb|KDP43450.1|2e-59hypothetical protein JCGZ_16737 [Jatropha curcas]
JMSF023E22Sequence547013012 (5)gb|KDP43450.1|9e-60hypothetical protein JCGZ_16737 [Jatropha curcas]521013012 (5)ref|XP_010677333.1|5e-35PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Beta vulgaris subsp. vulga

Alignment

This contig is upended


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rJMSF023E22-                                            TCTTCATACAAGGAGCATCTATATAT
JMFS028C10+                                                  ATACAAGGAGCATCTATATAT
JMFN007C07+                                                  ATACAAGGAGCATCTATATAT
                      ____________________________________________________________
consensus                                               TCTTCATACAAGGAGCATCTATATAT
 
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rJMSF023E22-          CATGCCTTGATGAAAGCAGTTGTCTAACGCAAAAGACTACCACACTGGGCGGGATATACA
JMFS028C10+           CATGCCTTGATGAAAGCAGTTGTCTAACGCAAAAGACTACCACACTGGGCGGGATATACA
JMFN007C07+           CATGCCTTGATGAAAGCAGTTGTCTAACGCAAAAGACTACCACACTGGGCGGGATATACA
                      ____________________________________________________________
consensus             CATGCCTTGATGAAAGCAGTTGTCTAACGCAAAAGACTACCACACTGGGCGGGATATACA
 
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rJMSF023E22-          TAAAGGCTATCCTCGCCCATGACAGTGCCTTCGAGATTATCTTAGTTCTTAAGGACACAG
JMFS028C10+           TAAAGGCTATCCTCGCCCATGACAGTGCCTTCGAGATTATCTTAGTTCTTAAGGACACAG
JMSF023E22+                          CCCATGACAGTGCCTTCGAGATTATCTTAGTTCTTAAGGACACAG
JMFN007C07+           TAAAGGCTATCCTCGCCCATGACAGTGCCTTCGAGATTATCTTAGTTCTTAAGGACACAG
                      ____________________________________________________________
consensus             TAAAGGCTATCCTCGCCCATGACAGTGCCTTCGAGATTATCTTAGTTCTTAAGGACACAG
 
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rJMSF023E22-          AAAAAACACGAAGCACAAACCGNTTTACAAAATATGATGTGACATTCATGGCGGCCCTAT
JMFS028C10+           AAAAAACACGAAGCACAAACCGTTTTACAAAATA-GATGTGACATTCATGGCGGCCCTAT
JMSF023E22+           AAAAAACACGAAGCACAAACCGTTTTACAAAATA-GATGTGACATTCATGGCGGCCCTAT
JMFN007C07+           AAAAAACACGAAGCACAAACCGTTTTACAAAATA-GATGTGACATTCATGGCGGCCCTAT
                      ____________________________________________________________
consensus             AAAAAACACGAAGCACAAACCGTTTTACAAAATA-GATGTGACATTCATGGCGGCCCTAT
 
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rJMSF023E22-          GCCCCATCGGGCTGGAGGAAAGGATTGGCGATCTCATCTGNGCCGTCAGTTGGCGCCACA
JMFS028C10+           GCCCCATCGGGCTGGAGGAAAGGATTGGCGATCTCATCTGTGCCGTCAGTTGGCGCCACA
JMSF023E22+           GCCCCATCGGGCTGGAGGAAAGGATTGGCGATCTCATCTGTGCCGTCAGTNGGCGCCACA
JMFN007C07+           GCCCCATCGGGCTGGAGGAAAGGATTGGCGATCTCATCTGTGCCGTCAGTTGGCGCCACA
                      ____________________________________________________________
consensus             GCCCCATCGGGCTGGAGGAAAGGATTGGCGATCTCATCTGTGCCGTCAGTTGGCGCCACA
 
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rJMSF023E22-          AGCATAACTGCAGTCCCCCTACACACAATTAATCCNANANNCCGTGTCTGATCTGTTGTC
JMFS028C10+           AGCATAACTGCAGTCCCCCTACACACAATTAATCCAAGACGCCGTGTCTGATCTGTTGTC
JMSF023E22+           AGCATAACTGCAGTCCCCCTACACACAATTAATCCAAGACGCCGTGTCTGATCTGTTGTC
JMFN007C07+           AGCATAACTGCAGTCCCCCTACACACAATTAATCCAAGACGCCGTGTCTGATCTGTTGTC
                      ____________________________________________________________
consensus             AGCATAACTGCAGTCCCCCTACACACAATTAATCCAAGACGCCGTGTCTGATCTGTTGTC
 
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rJMSF023E22-          TTCATAGGATCATCACAATCTCTANGATACTCAATGGCTTCATCCAAGACAAGATTCAGC
JMFS028C10+           TTCAGAGGATCATCAGAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGC
JMSF023E22+           TTCAGAGGATCATCAGAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGC
JMFN007C07+           TTCAGAGGATCATCAGAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGC
                      ____________________________________________________________
consensus             TTCAGAGGATCATCAGAATCTCTAAGATACTCAATGGCTTCATCCAAGACAAGATTCAGC
 
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rJMSF023E22-          AATTGGTACATAGCCTTTTAGTGTTCCTACAACTTGTCTGCCACCAGTAAGCTTGACTTG
JMFN032L17+                                                                     TG
JMFS028C10+           AATTGGT-CATAGCCTTTTAGTGTTCCTACAACTTGTCTGCCACCAGTAAGCTTGACTTG
JMSF023E22+           AATTGGT-CATAGCCTTTTAGTGTTCCTACAACTTGTCTGCCACCAGTAAGCTTGACTTG
JMFN007C07+           AATTGGT-CATAGCCTTTTAGTGTTCCTACAACTTGTCTGCCACCAGTAAGCTTGACTTG
                      ____________________________________________________________
consensus             AATTGGT-CATAGCCTTTTAGTGTTCCTACAACTTGTCTGCCACCAGTAAGCTTGACTTG
 
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rJMSF023E22-          CACACCCTTGNCNACNAACTTTGCCAAATCTAGAACTGTTTCTTTCCTA           
JMFN032L17+           CACACCCTTGTCAACGAACTTTGCCAAATCTAGAACAGTTTGTTTCCTACAGGACATTTG
JMFS028C10+           CACACCCTTGTCAACGAACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGACATTCT
JMSF023E22+           CACACCCTTGTCAACGAACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGACATTCT
JMFN007C07+           CACACCCTTGTCAACGAACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGACATTCT
                      ____________________________________________________________
consensus             CACACCCTTGTCAACGAACTTTGCCAAATCTAGAACTGTTTCTTTCCTACCTGACATTCT
 
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JMFN032L17+           GATCTTGTATTGGATCAAACACGAAT                                  
JMFS028C10+           GATCTTTTATTCGATCAAACACGAATACGCTGTAATACTCCCCAGTTAAACAGCAAAACA
JMSF023E22+           GATCTTTTATTCGATCAAACACGAATACGCTGTAATACTCCCCAGTTAAACAGCAAAACA
JMFN007C07+           GATCTTTTATTCGATCAAACACGAATACGCTGTAATACTCCCCAGTTAAACAGCAAAACA
                      ____________________________________________________________
consensus             GATCTTTTATTCGATCAAACACGAATACGCTGTAATACTCCCCAGTTAAACAGCAAAACA
 
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JMFS028C10+           ACACCCTTTCGGAGCTCAAAAGCTGTGCCCTAACTTCTCTTCCCCTTC            
JMSF023E22+           ACACCCTTTCGGAGCTCAAAAGCTGTGCCCTAACTTCTCTTCCCCTTCTCTCTCTCT   
JMFN007C07+           ACACCCTTTCGGAGCTCAAAAGCTGTGCCCTAACTTCTCTTCCCCTTCTCTCTCTCTCTC
                      ____________________________________________________________
consensus             ACACCCTTTCGGAGCTCAAAAGCTGTGCCCTAACTTCTCTTCCCCTTCTCTCTCTCTCTC