Contig 013008:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN004B23Sequence612013008 (3)ref|XP_009785640.1|1e-99PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X
JMFS108F04Sequence614013008 (3)ref|XP_009785624.1|7e-51PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X
JMFS108G04Sequence615013008 (3)ref|XP_009624659.1|1e-56PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X

Alignment

This contig is upended


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JMFS108G04+                                 GCCGGGGTGGTGGGTCTTTCACCGTCTTGTTTTGCCTG
JMFS108F04+                                 GCCGGGGTGGTGGGTCTTTCACCGTCTTGTTTTGCCTG
                      ____________________________________________________________
consensus                                   GCCGGGGTGGTGGGTCTTTCACCGTCTTGTTTTGCCTG
 
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JMFS108G04+           TGAAACAGCCGAAGGTGCATCTACCTCCCCAGGAACTACCTTGTCAACTTGCTGCCTCTC
JMFS108F04+           T-AAACAGCCGAAGGTGCATCTACCTCCCCAGGAACTACCTTGTCAACTTGCTGCCTCTC
                      ____________________________________________________________
consensus             TGAAACAGCCGAAGGTGCATCTACCTCCCCAGGAACTACCTTGTCAACTTGCTGCCTCTC
 
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JMFS108G04+           GTTTTTACTTTGAACCGAGCCAGTGTTTGGCATTTTGCCATCCAATTCCGAGGTTGCTAC
JMFS108F04+           GTTTTTACTTTGAACCGAGCCAGTGTTTGGCATTTTGCCATCCAATTCCGAGGTTGCTAC
                      ____________________________________________________________
consensus             GTTTTTACTTTGAACCGAGCCAGTGTTTGGCATTTTGCCATCCAATTCCGAGGTTGCTAC
 
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JMFS108G04+           TCCTGGTTCGGTGTCAGTACTAGACCCTGAAGAGCCGCGAGTATCTATTCTGTTGCCATC
JMFS108F04+           TCCTGGTTCGGTGTCAGTACTAGACCCTGAAGAGCCGCGAGTATCTATTCTGTTGCCATC
JMFN004B23+                                                           TCTGTTGCCATC
                      ____________________________________________________________
consensus             TCCTGGTTCGGTGTCAGTACTAGACCCTGAAGAGCCGCGAGTATCTATTCTGTTGCCATC
 
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JMFS108G04+           GACAATTGGCGGGGAAGCATCAACCGCCTTGGAAGCCGTCGTCTGCACCTCAGATTTCCC
JMFS108F04+           GACAATTGGCGGGGAAGCATCAACCGCCTTGGAAGCCGTCGTCTGCACCTCAGATTTCCC
JMFN004B23+           GACAATTGGCGGGGAAGCATCAACCGCCTTGGAAGCCGTCGTCTGCACCTCAGATTTCCC
                      ____________________________________________________________
consensus             GACAATTGGCGGGGAAGCATCAACCGCCTTGGAAGCCGTCGTCTGCACCTCAGATTTCCC
 
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JMFS108G04+           GTCTTTTTCTTGGTTAGGTCTTGGAGGCGTAGCCGCTTTGGTCTTATCCTCACTGCTATT
JMFS108F04+           GTCTTTTTCTTGGTTAGGTCTTGGAGGCGTAGCCGCTTTGGTCTTATCCTCACTGCTATT
JMFN004B23+           GTCTTTTTCTTGGTTAGGTCTTGGAGGCGTAGCCGCTTTGGTCTTATCCTCACTGCTATT
                      ____________________________________________________________
consensus             GTCTTTTTCTTGGTTAGGTCTTGGAGGCGTAGCCGCTTTGGTCTTATCCTCACTGCTATT
 
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JMFS108G04+           ATTAATTTTATAAGACGGCTCAATCAGGAGGAACGGGTGGTTAGCACGGTTAACAGTCAT
JMFS108F04+           ATTAATTTTATAAGACGGCTCAATCAGGAGGAACGGGTGGTTAGCACGGTTAACAGTCAT
JMFN004B23+           ATTAATTTTATAAGACGGCTCAATCAGGAGGAACGGGTGGTTAGCACGGTTAACAGTCAT
                      ____________________________________________________________
consensus             ATTAATTTTATAAGACGGCTCAATCAGGAGGAACGGGTGGTTAGCACGGTTAACAGTCAT
 
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JMFS108G04+           AACAGAATCAGCAAGCGGCACTTCATCCACATCGGCCTCCTTGTATATCTTCTGCACTGT
JMFS108F04+           AACAGAATCAGCAAGCGGCACTTCATCCACATCGGCCTCCTTGTATATCTTCTGCACTGT
JMFN004B23+           AACAGAATCAGCAAGCGGCACTTCATCCACATCGGCCTCCTTGTATATCTTCTGCACTGT
                      ____________________________________________________________
consensus             AACAGAATCAGCAAGCGGCACTTCATCCACATCGGCCTCCTTGTATATCTTCTGCACTGT
 
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JMFS108G04+           GCGGATAGGCGTGGCAAGGCGAGCACGATGATGACTGATAACTCTAAGAAGATCCAGCAA
JMFS108F04+           GCGGATAGGCGTGGCAAGGCGAGCACGATGATGACTGATAACTCTAAGAAGATCCAGCAA
JMFN004B23+           GCGGATAGGCGTGGCAAGGCGAGCACGATGATGACTGATAACTCTAAGAAGATCCAGCAA
                      ____________________________________________________________
consensus             GCGGATAGGCGTGGCAAGGCGAGCACGATGATGACTGATAACTCTAAGAAGATCCAGCAA
 
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JMFS108G04+           TATGACTTCCTTGACTCGAAGGTACTCTTCGAAATGTGAAGTCTTTACAAAGCAAGACAC
JMFS108F04+           TATGACTTCCTTGACTCGAAGGTACTCTTCGAAATGTGAAGTCTTTACAAAGCAAGACAC
JMFN004B23+           TATGACTTCCTTGACTCGAAGGTACTCTTCGAAATGTGAAGTCTTTACAAAGCAAGACAC
                      ____________________________________________________________
consensus             TATGACTTCCTTGACTCGAAGGTACTCTTCGAAATGTGAAGTCTTTACAAAGCAAGACAC
 
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JMFS108G04+           CATGATCAAAAGAGCCTGATTCTCTCGATCGATATTA                       
JMFS108F04+           CATGATCAAAAGAGCCTGATTCTCTCGATCGATATTA                       
JMFN004B23+           CATGATCAAAAGAGCCTGATTCTCTCGATCGATATTATCGAGGAAAACTCGTCTATGTAA
                      ____________________________________________________________
consensus             CATGATCAAAAGAGCCTGATTCTCTCGATCGATATTATCGAGGAAAACTCGTCTATGTAA
 
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JMFN004B23+           TTTTTGTTGTTCCACTTGAGGATTTTTGGCTAAAACTTTCCGCATGTCAGCAACAATATT
                      ____________________________________________________________
consensus             TTTTTGTTGTTCCACTTGAGGATTTTTGGCTAAAACTTTCCGCATGTCAGCAACAATATT
 
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JMFN004B23+           ATTGATCTTATTCACATCGAGGTGACTGATAGCAAGGTGAGTCTTGATACGCCAATGAGT
                      ____________________________________________________________
consensus             ATTGATCTTATTCACATCGAGGTGACTGATAGCAAGGTGAGTCTTGATACGCCAATGAGT
 
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JMFN004B23+           CTTCTGGGTAAGATTCCTAACCACGTTTACCGTGAATTTATGATTTGGAATATGAATTGC
                      ____________________________________________________________
consensus             CTTCTGGGTAAGATTCCTAACCACGTTTACCGTGAATTTATGATTTGGAATATGAATTGC