Contig 013006:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN003J24Sequence616013006 (5)ref|XP_009586861.1|3e-58PREDICTED: histone H2A.6 [Nicotiana tomentosiformis] ref|XP_009597983.1| PREDICT
JMFN006E19Sequence642013006 (5)ref|XP_009586861.1|3e-58PREDICTED: histone H2A.6 [Nicotiana tomentosiformis] ref|XP_009597983.1| PREDICT
JMFN007P10Sequence601013006 (5)ref|XP_009586861.1|2e-58PREDICTED: histone H2A.6 [Nicotiana tomentosiformis] ref|XP_009597983.1| PREDICT
JMFN008F02Sequence608013006 (5)ref|XP_009586861.1|2e-58PREDICTED: histone H2A.6 [Nicotiana tomentosiformis] ref|XP_009597983.1| PREDICT
JMFN034G06Sequence602013006 (5)ref|XP_009586861.1|2e-58PREDICTED: histone H2A.6 [Nicotiana tomentosiformis] ref|XP_009597983.1| PREDICT

Alignment

This contig is upended


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JMFN006E19+                                         ACATGGAAGAATGTAGTTTTCATTTCCTTC
                      ____________________________________________________________
consensus                                           ACATGGAAGAATGTAGTTTTCATTTCCTTC
 
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JMFN006E19+           CTCAAATGTATATTCACACAGGCTGAGAAACAGGGTACTAATAACAACAAGAAACAGTAG
JMFN034G06+                                                                 CAGTAG
JMFN008F02+                                                                 CAGTAG
JMFN007P10+                                                                  AGTAG
                      ____________________________________________________________
consensus             CTCAAATGTATATTCACACAGGCTGAGAAACAGGGTACTAATAACAACAAGAAACAGTAG
 
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JMFN006E19+           AACTTAGTTAATACTGACCTAAATTCTATCTACCCAAGGGAGGAAAAGTGCTATTCTGGA
JMFN034G06+           AACTTAGTTAATACTGACCTAAATTCTATCTACCCAAGGGAGGAAAAGTGCTATTCTGGA
JMFN008F02+           AACTTAGTTAATACTGACCTAAATTCTATCTACCCAAGGGAGGAAAAGTGCTATTCTGGA
JMFN007P10+           AACTTAGTTAATACTGACCTAAATTCTATCTACCCAAGGGAGGAAAAGTGCTATTCTGGA
                      ____________________________________________________________
consensus             AACTTAGTTAATACTGACCTAAATTCTATCTACCCAAGGGAGGAAAAGTGCTATTCTGGA
 
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JMFN006E19+           ACCAAATCAAAACCACATATCAATGCCTGATAGCCACAGGAAGTTTCTTCTCTACATCTA
JMFN034G06+           ACCAAATCAAAACCACATATCAATGCCTGATAGCCACAGGAAGTTTCTTCTCTACATCTA
JMFN008F02+           ACCAAATCAAAACCACATATCAATGCCTGATAGCCACAGGAAGTTTCTTCTCTACATCTA
JMFN007P10+           ACCAAATCAAAACCACATATCAATGCCTGATAGCCACAGGAAGTTTCTTCTCTACATCTA
JMFN003J24+                                                                   TCTA
                      ____________________________________________________________
consensus             ACCAAATCAAAACCACATATCAATGCCTGATAGCCACAGGAAGTTTCTTCTCTACATCTA
 
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JMFN006E19+           ATCTTCATCGGCGGAGGGCTTGGATGAGCCGCCGGCCTTCTTGGGAAGCAGAAGGTTGTG
JMFN034G06+           ATCTTCATCGGCGGAGGGCTTGGATGAGCCGCCGGCCTTCTTGGGAAGCAGAAGGTTGTG
JMFN008F02+           ATCTTCATCGGCGGAGGGCTTGGATGAGCCGCCGGCCTTCTTGGGAAGCAGAAGGTTGTG
JMFN007P10+           ATCTTCATCGGCGGAGGGCTTGGATGAGCCGCCGGCCTTCTTGGGAAGCAGAAGGTTGTG
JMFN003J24+           ATCTTCATCGGCGGAGGGCTTGGATGAGCCGCCGGCCTTCTTGGGAAGCAGAAGGTTGTG
                      ____________________________________________________________
consensus             ATCTTCATCGGCGGAGGGCTTGGATGAGCCGCCGGCCTTCTTGGGAAGCAGAAGGTTGTG
 
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JMFN006E19+           AATGTTAGGCATGACACCGCCATTAGCAATCGTCACATCTCCGAGCAGCTTGCTCAGCTC
JMFN034G06+           AATGTTAGGCATGACACCGCCATTAGCAATCGTCACATCTCCGAGCAGCTTGCTCAGCTC
JMFN008F02+           AATGTTAGGCATGACACCGCCATTAGCAATCGTCACATCTCCGAGCAGCTTGCTCAGCTC
JMFN007P10+           AATGTTAGGCATGACACCGCCATTAGCAATCGTCACATCTCCGAGCAGCTTGCTCAGCTC
JMFN003J24+           AATGTTAGGCATGACACCGCCATTAGCAATCGTCACATCTCCGAGCAGCTTGCTCAGCTC
                      ____________________________________________________________
consensus             AATGTTAGGCATGACACCGCCATTAGCAATCGTCACATCTCCGAGCAGCTTGCTCAGCTC
 
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JMFN006E19+           CTCGTCGTTCCTCACGGCCAATTGGATGTGCCTTGGAACAATCCTCGTCTTCTTGTTGTC
JMFN034G06+           CTCGTCGTTCCTCACGGCCAATTGGATGTGCCTTGGAACAATCCTCGTCTTCTTGTTGTC
JMFN008F02+           CTCGTCGTTCCTCACGGCCAATTGGATGTGCCTTGGAACAATCCTCGTCTTCTTGTTGTC
JMFN007P10+           CTCGTCGTTCCTCACGGCCAATTGGATGTGCCTTGGAACAATCCTCGTCTTCTTGTTGTC
JMFN003J24+           CTCGTCGTTCCTCACGGCCAATTGGATGTGCCTTGGAACAATCCTCGTCTTCTTGTTGTC
                      ____________________________________________________________
consensus             CTCGTCGTTCCTCACGGCCAATTGGATGTGCCTTGGAACAATCCTCGTCTTCTTGTTGTC
 
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JMFN006E19+           CCTCGCTGCATTTCCAGCCAATTCGAGGACCTCAGCAGCAAGGTATTCAAGCACAGCGGC
JMFN034G06+           CCTCGCTGCATTTCCAGCCAATTCGAGGACCTCAGCAGCAAGGTATTCAAGCACAGCGGC
JMFN008F02+           CCTCGCTGCATTTCCAGCCAATTCGAGGACCTCAGCAGCAAGGTATTCAAGCACAGCGGC
JMFN007P10+           CCTCGCTGCATTTCCAGCCAATTCGAGGACCTCAGCAGCAAGGTATTCAAGCACAGCGGC
JMFN003J24+           CCTCGCTGCATTTCCAGCCAATTCGAGGACCTCAGCAGCAAGGTATTCAAGCACAGCGGC
                      ____________________________________________________________
consensus             CCTCGCTGCATTTCCAGCCAATTCGAGGACCTCAGCAGCAAGGTATTCAAGCACAGCGGC
 
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JMFN006E19+           GAGATAGACCGGAGCTCCGGCACCAACACGCTCGGCGTACTTCCCGGCCTTGAGGAACCG
JMFN034G06+           GAGATAGACCGGAGCTCCGGCACCAACACGCTCGGCGTACTTCCCGGCCTTGAGGAACCG
JMFN008F02+           GAGATAGACCGGAGCTCCGGCACCAACACGCTCGGCGTACTTCCCGGCCTTGAGGAACCG
JMFN007P10+           GAGATAGACCGGAGCTCCGGCACCAACACGCTCGGCGTACTTCCCGGCCTTGAGGAACCG
JMFN003J24+           GAGATAGACCGGAGCTCCGGCACCAACACGCTCGGCGTACTTCCCGGCCTTGAGGAACCG
                      ____________________________________________________________
consensus             GAGATAGACCGGAGCTCCGGCACCAACACGCTCGGCGTACTTCCCGGCCTTGAGGAACCG
 
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JMFN006E19+           AGCGATACGACCGACGGGGAACTGGAGACCAGCCTTGCTGCTCCGGGACTGAGCCTTCTT
JMFN034G06+           AGCGATACGACCGACGGGGAACTGGAGACCAGCCTTGCTGCTCCGGGACTGAGCCTTCTT
JMFN008F02+           AGCGATACGACCGACGGGGAACTGGAGACCAGCCTTGCTGCTCCGGGACTGAGCCTTCTT
JMFN007P10+           AGCGATACGACCGACGGGGAACTGGAGACCAGCCTTGCTGCTCCGGGACTGAGCCTTCTT
JMFN003J24+           AGCGATACGACCGACGGGGAACTGGAGACCAGCCTTGCTGCTCCGGGACTGAGCCTTCTT
                      ____________________________________________________________
consensus             AGCGATACGACCGACGGGGAACTGGAGACCAGCCTTGCTGCTCCGGGACTGAGCCTTCTT
 
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JMFN006E19+           TGCGGCACCGGAGCCGAGAGTCTTTCCACGTCCGGCCATCGCTGCTATCACCGCCGACGA
JMFN034G06+           TGCGGCACCGGAGCCGAGAGTCTTTCCACGTCCGGCCATCGCTGCTATCACCGCCGACGA
JMFN008F02+           TGCGGCACCGGAGCCGAGAGTCTTTCCACGTCCGGCCATCGCTGCTATCACCGCCGACGA
JMFN007P10+           TGCGGCACCGGAGCCGAGAGTCTTTCCACGTCCGGCCATCGCTGCTATCACCGCCGACGA
JMFN003J24+           TGCGGCACCGGAGCCGAGAGTCTTTCCACGTCCGGCCATCGCTGCTATCACCGCCGACGA
                      ____________________________________________________________
consensus             TGCGGCACCGGAGCCGAGAGTCTTTCCACGTCCGGCCATCGCTGCTATCACCGCCGACGA
 
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JMFN006E19+           ACTGAAACAGAG                                                
JMFN034G06+           ACTGAAACAGAGAAAAACCGAAAGCAGGAAGAAGATTCACAAGTTCGTAGAGAGAA    
JMFN008F02+           ACTGAAACAGAGAAAAACCGAAAGCAGGAAGAAGATTCACAAGTTCGTAGAGAGAA    
JMFN007P10+           ACTGAAACAGAGAAAAACCGAAAGCAGGAAGAAGATTCACAAGTTCGTAGAGAGAA    
JMFN003J24+           ACTGAAACAGAGAAAAACCGAAAGCAGGAAGAAGATTCACAAGTTCGTAGAGAGAACAAA
                      ____________________________________________________________
consensus             ACTGAAACAGAGAAAAACCGAAAGCAGGAAGAAGATTCACAAGTTCGTAGAGAGAACAAA