Contig 013003:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021C17Sequence491013003 (8)ref|XP_009590541.1|124PREDICTED: uncharacterized protein LOC104087699 [Nicotiana tomentosiformis]455013003 (8)ref|XP_009590541.1|124PREDICTED: uncharacterized protein LOC104087699 [Nicotiana tomentosiformis]
JMFF032I16Sequence526013003 (8)ref|XP_009590541.1|124PREDICTED: uncharacterized protein LOC104087699 [Nicotiana tomentosiformis]499013003 (8)ref|XP_009590541.1|124PREDICTED: uncharacterized protein LOC104087699 [Nicotiana tomentosiformis]
JMFF051N05Sequence535013003 (8)ref|XP_009590541.1|124PREDICTED: uncharacterized protein LOC104087699 [Nicotiana tomentosiformis]542013003 (8)ref|XP_009590541.1|124PREDICTED: uncharacterized protein LOC104087699 [Nicotiana tomentosiformis]
JMFS100B07Sequence426013003 (8)ref|XP_009590541.1|124PREDICTED: uncharacterized protein LOC104087699 [Nicotiana tomentosiformis]
JMSF008B05Sequence251009232 (8)emb|CAJ13715.1|4e-13putative replication factor A [Capsicum chinense]424013003 (8)ref|XP_009590541.1|124PREDICTED: uncharacterized protein LOC104087699 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF032I16+                                                     TTTTTTTTTTCACCATCT
                      ____________________________________________________________
consensus                                                       TTTTTTTTTTCACCATCT
 
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JMFF032I16+           CAACATAATTGAATTGGCATAGCTGTTCTGAAATTACATACGACATACATGCATTCACTC
rJMFF032I16-                      ATTGGCATAGCTGTTCTGAAATTACATACGACATACATGCATTCACTC
                      ____________________________________________________________
consensus             CAACATAATTGAATTGGCATAGCTGTTCTGAAATTACATACGACATACATGCATTCACTC
 
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JMFF032I16+           AAATATAACAAACATAATATTATTATTAATAGCAATCTCTCTCGACTTTGAGTAGCATAG
rJMFF032I16-          AAATATAACAAACATAATATTATTATTAATAGCAATCTCTCTCGACTTTGAGTAGCATAG
rJMFF021C17-                                          CAATCTCTCTCGACTTTGAGTAGCATAG
rJMSF008B05-                                                                GCATAG
JMFF021C17+                TAACAAACATAATATTATTATTAATAGCAATCTCTCTCGACTTTGAGTAGCATAG
JMFS100B07+               ATAACAAACATAATATTATTATTAATAGCAATCTCTCTCGACTTTGAGTAGCATAG
rJMFF051N05-             TATAACAAACATAATATTATTATTAATAGCAATCTCTCTCGACTTTGAGTAGCATAG
JMFF051N05+               ATAACAAACATAATATTATTATTAATAGCAATCTCTCTCGACTNTGAGTAGCATAG
                      ____________________________________________________________
consensus             AAATATAACAAACATAATATTATTATTAATAGCAATCTCTCTCGACTTTGAGTAGCATAG
 
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JMFF032I16+           CATATACGTCAGCAAATGAGGAAATTTTCCAACTACAAAATCTCAGCATTATCCGATAGA
rJMFF032I16-          CATATACGTCAGCAAATGAGGAAATTTTCCAACTACAAAATCTCAGCATTATCCGATAGA
rJMFF021C17-          CATATACGTCAGCAAATGAGGAAATTTTCCAACTACAAAATCTCAGCATTATCCGATAGA
rJMSF008B05-          CATATACGTCAGCAAATGAGGAAATTTTCCAACTACAAAATCTCAGCATTATCCGATAGA
JMFF021C17+           CATATACGTCAGCAAATGAGGAAATTTTCCAACTACAAAATCTCAGCATTATCCGATAGA
JMFS100B07+           CATATACGTCAGCAAATGAGGAAATTTTCCAACTACAAAATCTCAGCATTATCCGATAGA
rJMFF051N05-          CATATACGTCAGCAAATGAGGAAATTTTCCAACTACAAAATCTCAGCATTATCCGATAGA
JMFF051N05+           CATATACGTCAGCAAATGAGGAAATTTTCCAACTACAAAATCTCAGCATTATCCGATAGA
                      ____________________________________________________________
consensus             CATATACGTCAGCAAATGAGGAAATTTTCCAACTACAAAATCTCAGCATTATCCGATAGA
 
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JMFF032I16+           CAGATACCACCATCTTATTATTCCCAT-AAAAACACAGAAATCTCAAGGGATAAAATTAC
rJMFF032I16-          CAGATACCACCATCTTATTATTCCCAT-AAAAACACAGAAATCTCAAGGGATAAAATTAC
rJMFF021C17-          CAGATACCACCATCTTATTATTCCCATAAAAAACACAGAAATCTCAAGGGATAAAATTAC
rJMSF008B05-          CAGATACCACCATCTTATTATTCCCATAAAAAACACAGAAATCTCAAGGGATAAAATTAC
JMFF021C17+           CAGATACCACCATCTTATTATTCCCATAAAAAACACAGAAATCTCAAGGGATAAAATTAC
JMFS100B07+           CAGATACCACCATCTTATTATTCCCATAAAAAACACAGAAATCTCAAGGGATAAAATTAC
rJMFF051N05-          CAGATACCACCATCTTATTATTCCCATAAAAAACACAGAAATCTCAAGGGATAAAATTAC
JMFF051N05+           CAGATACCACCATCTTATTATTCCCATAAAAAACACAGAAATCTCAAGGGATAAAATTAC
                      ____________________________________________________________
consensus             CAGATACCACCATCTTATTATTCCCATAAAAAACACAGAAATCTCAAGGGATAAAATTAC
 
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JMFF032I16+           ACAAACTATTCTGCAATCATCTACCCCTGTTTTTTACCAGTCATACCAGCAACCACATCA
rJMFF032I16-          ACAAACTATTCTGCAATCATCTACCCCTGTTTTTTACCAGTCATACCAGCAACCACATCA
rJMFF021C17-          ACAAACTATTCTGCAATCATCTACCCCTGTTTTTTACCAGTCATACCAGCAACCACATCA
rJMSF008B05-          ACAAACTATTCTGCAATCATCTACCCCTGTTTTTTACCAGTCATACCAGCAACCACATCA
JMFF021C17+           ACAAACTATTCTGCAATCATCTACCCCTGTTTTTTACCAGTCATACCAGCAACCACATCA
JMFS100B07+           ACAAACTATTCTGCAATCATCTACCCCTGTTTTTTACCAGTCATACCAGCAACCACATCA
rJMFF051N05-          ACAAACTATTCTGCAATCATCTACCCCTGTTTTTTACCAGTCATACCAGCAACCACATCA
JMFF051N05+           ACAAACTATTCTGCAATCATCTACCCCTGTTTTTTACCAGTCATACCAGCAACCACATCA
                      ____________________________________________________________
consensus             ACAAACTATTCTGCAATCATCTACCCCTGTTTTTTACCAGTCATACCAGCAACCACATCA
 
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JMFF032I16+           GTTAGAGCAGGTTGAGGGACTTGCTTGGATGATTCAAAAGAGTCTAGCATAGGCCTTACA
rJMFF032I16-          GTTAGAGCAGGTTGAGGGACTTGCTTGGATGATTCAAAAGAGTCTAGCATAGGCCTTACA
rJMFF021C17-          GTTAGAGCAGGTTGAGGGACTTGCTTGGATGATTCAAAAGAGTCTAGCATAGGCCTTACA
rJMSF008B05-          GTTAGAGCAGGTTGAGGGACTTGCTTGGATGATTCAAAAGAGTCTAGCATAGGCCTTACA
JMFF021C17+           GTTAGAGCAGGTTGAGGGACTTGCTTGGATGATTCAAAAGAGTCTAGCATAGGCCTTACA
JMFS100B07+           GTTAGAGCAGGTTGAGGGACTTGCTTGGATGATTCAAAAGAGTCTAGCATAGGCCTTACA
rJMFF051N05-          GTTAGAGCAGGTTGAGGGACTTGCTTGGATGATTCAAAAGAGTCTAGCATAGGCCTTACA
JMFF051N05+           GTTAGAGCAGGTTGAGGGACTTGCTTGGATGATTCAAAAGAGTCTAGCATAGGCCTTACA
                      ____________________________________________________________
consensus             GTTAGAGCAGGTTGAGGGACTTGCTTGGATGATTCAAAAGAGTCTAGCATAGGCCTTACA
 
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JMFF032I16+           ACTGCTGGGAGGAAGAGCCCAACGCCGGCGATGAGGCAAGAAGCAGCAACGACAGGTTCT
rJMFF032I16-          ACTGCTGGGAGGAAGAGCCCAACGCCGGCGATGAGGCAAGAAGCAGCAACGACAGGTTCT
rJMFF021C17-          ACTGCTGGGAGGAAGAGCCCAACGCCGGCGATGAGGCAAGAAGCAGCAACGACAGGTTCT
rJMSF008B05-          ACTGCTGGGAGGAAGAGCCCAACGCCGGCGATGAGGCAAGAAGCAGCAACGACAGGTTCT
JMFF021C17+           ACTGCTGGGAGGAAGAGCCCAACGCCGGCGATGAGGCAAGAAGCAGCAACGACAGGTTCT
JMFS100B07+           ACTGCTGGGAGGAAGAGCCCAACGCCGGCGATGAGGCAAGAAGCAGCAACGACAGGTTCT
rJMFF051N05-          ACTGCTGGGAGGAAGAGCCCAACGCCGGCGATGAGGCAAGAAGCAGCAACGACAGGTTCT
JMFF051N05+           ACTGCTGGGAGGAAGAGCCCAACGCCGGCGATGAGGCAAGAAGCAGCAACGACAGGTTCT
                      ____________________________________________________________
consensus             ACTGCTGGGAGGAAGAGCCCAACGCCGGCGATGAGGCAAGAAGCAGCAACGACAGGTTCT
 
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JMFF032I16+           TGGACTACGAACATTCTCAATTTACCCATCACAGCCATCTTTATCTTTCCTTAATTCCTT
rJMFF032I16-          TGGACTACGAACATTCTCAATTTACCCATCACAGCCATCTTTATCTTTCCTTAATTCCTT
rJMFF021C17-          TGGACTACGAACATTCTCAATTTACCCATCACAGCCATCTTTATCTTTCCTTAATTCCTT
rJMSF008B05-          TGGACTACGAACATTCTCAATTTACCCATCACAGCCATCTTTATCTTTCCTTAATTCCTT
JMFF021C17+           TGGACTACGAACATTCTCAATTTACCCATCACAGCCATCTTTATCTTTCCTTAATTCCTT
JMFS100B07+           TGGACTACGAACATTCTCAATTTACCCATCACAGCCATCTTTATCTTTCCTTAATTCCTT
rJMFF051N05-          TGGACTACGAACATTCTCAATTTACCCATCACAGCCATCTTTATCTTTCCTTAATTCCTT
JMFF051N05+           TGGACTACGAACATTCTCAATTTACCCATCACAGCCATCTTTATCTTTCCTTAATTCCTT
                      ____________________________________________________________
consensus             TGGACTACGAACATTCTCAATTTACCCATCACAGCCATCTTTATCTTTCCTTAATTCCTT
 
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JMFF032I16+           CTACGACTTTTCTCCTCTACGCCCCTCTC                               
rJMFF032I16-          CTACGACTTTTCTCCTCTACGCCCCTCTC                               
rJMFF021C17-          CTACGACTTTTCTCCTCTACGCCCCTCTCAAACACTCCAAATTCCAAATTCTTCGTATTA
rJMSF008B05-          CTACGACTTTTCTCCTCTACGCCCCTCTCAAACACTCCAAATTCC               
JMFF021C17+           CTACGACTTTTCTCCTCTACGCCCCTCTCAAACACTCCAAATTCCAAATTCTTCGTATTA
JMFS100B07+           CTACGACTTT                                                  
rJMFF051N05-          CTACGACTTTTC-CCTCTACGCCCCTCTCAAACACTCCAAATTCCAAATTCTTCGTATTA
JMFF051N05+           CTACGACTTTTC-CCTCTACGCCCCTCTCAAACACTCCAAATTCCAAATTCTTCGTATTA
                      ____________________________________________________________
consensus             CTACGACTTTTCTCCTCTACGCCCCTCTCAAACACTCCAAATTCCAAATTCTTCGTATTA
 
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rJMFF021C17-          CGCAATC                                                     
JMFF021C17+           CGCAATC                                                     
rJMFF051N05-          CGCAATCGGCGATGAAGTACCGAGGTAACCGAGATGGTGA                    
JMFF051N05+           CGCAATCGGCGATGAAGTACCGAGGTAACCGAGATGGTGATTGAACTATGAAGACGGGCC
                      ____________________________________________________________
consensus             CGCAATCGGCGATGAAGTACCGAGGTAACCGAGATGGTGATTGAACTATGAAGACGGGCC