Contig 013001:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF051F20Sequence565013001 (2)ref|XP_009795938.1|77.8PREDICTED: uncharacterized protein LOC104242560 [Nicotiana sylvestris] ref|XP_00547001251 (2)
JMFS106A12Sequence623013001 (2)

Alignment

This contig is upended


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JMFS106A12+                GAGACAGAAAGAGTAGAATCNCAACTACTGAGTGGCAATTCACAGCTCCATAAAA
                      ____________________________________________________________
consensus                  GAGACAGAAAGAGTAGAATCNCAACTACTGAGTGGCAATTCACAGCTCCATAAAA
 
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JMFS106A12+           CCAAAACACAGATAAATCAGAAGTGTATTCAAAATTTCAGAGTTTTGGTGAGAAATTTCA
                      ____________________________________________________________
consensus             CCAAAACACAGATAAATCAGAAGTGTATTCAAAATTTCAGAGTTTTGGTGAGAAATTTCA
 
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JMFS106A12+           GCTATTACCTAGAAGATGCAGAACTTTATCCATAGAGTAACAAAACAAACATCCCAATTC
                      ____________________________________________________________
consensus             GCTATTACCTAGAAGATGCAGAACTTTATCCATAGAGTAACAAAACAAACATCCCAATTC
 
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JMFS106A12+           AAGGAAGAGGATAATGTATAATAACCTTTTATTTCTGTAAAGAGAAAAAGAATTTAAGCA
                      ____________________________________________________________
consensus             AAGGAAGAGGATAATGTATAATAACCTTTTATTTCTGTAAAGAGAAAAAGAATTTAAGCA
 
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JMFS106A12+           CTTCAAAATATCTCTTCAGAAGACTCGAAACCATAAATTCTCTTCCGAAAGATCTCACTA
                      ____________________________________________________________
consensus             CTTCAAAATATCTCTTCAGAAGACTCGAAACCATAAATTCTCTTCCGAAAGATCTCACTA
 
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JMFS106A12+           AAAGAAAACAAAAATCTAATCACAACAATTGACAGATCCGTAAATCGACATCTCCAGAAA
                      ____________________________________________________________
consensus             AAAGAAAACAAAAATCTAATCACAACAATTGACAGATCCGTAAATCGACATCTCCAGAAA
 
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JMFS106A12+           CAAATCATGTACACCGTACAACACACACCCAAGCTGCTACGGAGAAAGATGCACGGCATT
                      ____________________________________________________________
consensus             CAAATCATGTACACCGTACAACACACACCCAAGCTGCTACGGAGAAAGATGCACGGCATT
 
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JMFS106A12+           TATGAGCAACACAACAAACAAGAAACGTAAACAAGAAGCCATTGAGGAAACAACCTAAGA
                      ____________________________________________________________
consensus             TATGAGCAACACAACAAACAAGAAACGTAAACAAGAAGCCATTGAGGAAACAACCTAAGA
 
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JMFS106A12+           ATGGACAAAAAAAAGATGAGATTTTTTTGAGAAATTACCAGAGACCCAGACTTGAAAACT
JMFF051F20+                                                CCAGAGACCCAGACTTGAAAACT
                      ____________________________________________________________
consensus             ATGGACAAAAAAAAGATGAGATTTTTTTGAGAAATTACCAGAGACCCAGACTTGAAAACT
 
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JMFS106A12+           GAGAATCAAGAGGAACCCATTACTGGGGAGGTCAGAGCTGAAGAGTTCACAGACTCAGAG
JMFF051F20+           GAGAATCAAGAGGAACCCATTACTGGGGAGGTCAGAGCTGAAGAGTTCACAGACTCAGAG
                      ____________________________________________________________
consensus             GAGAATCAAGAGGAACCCATTACTGGGGAGGTCAGAGCTGAAGAGTTCACAGACTCAGAG
 
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JMFS106A12+           GGAGGGATGGGTTGAAAATGAGGCTTCT                                
JMFF051F20+           GGAGGGATGGGTTGAAAATGAGGCTTCTTGTGATGATGCAGAGAAAAGGGACGAAACGGA
                      ____________________________________________________________
consensus             GGAGGGATGGGTTGAAAATGAGGCTTCTTGTGATGATGCAGAGAAAAGGGACGAAACGGA
 
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JMFF051F20+           TGCATAGATTTTCGTCCATTGTCACACAGCGGCAAGGCAGAATGCGGAAAGGAGCTTGGC
                      ____________________________________________________________
consensus             TGCATAGATTTTCGTCCATTGTCACACAGCGGCAAGGCAGAATGCGGAAAGGAGCTTGGC
 
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JMFF051F20+           GTTTTGTGGATCTGCTGGGGCCACACCCACTGCTTTCAGAGTTTCAGTGAGCATAAAGGG
                      ____________________________________________________________
consensus             GTTTTGTGGATCTGCTGGGGCCACACCCACTGCTTTCAGAGTTTCAGTGAGCATAAAGGG
 
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JMFF051F20+           AGAGAGAGAGAGAATTGGAGAATAACTTACATGGGAAGAGACATGGGATTTGTCAACCGG
                      ____________________________________________________________
consensus             AGAGAGAGAGAGAATTGGAGAATAACTTACATGGGAAGAGACATGGGATTTGTCAACCGG