Contig 012996:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF049G14Sequence646012996 (3)ref|XP_010691964.1|223PREDICTED: ribose-phosphate pyrophosphokinase 1 [Beta vulgaris subsp. vulgaris]656024430gb|KJB76293.1|2e-52hypothetical protein B456_012G081900 [Gossypium raimondii] gb|KJB76295.1| hypoth
JMSF027C21Sequence649012996 (3)ref|XP_009785600.1|416PREDICTED: ribose-phosphate pyrophosphokinase 1 [Nicotiana sylvestris]746012996 (3)ref|XP_009785600.1|385PREDICTED: ribose-phosphate pyrophosphokinase 1 [Nicotiana sylvestris]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-                                                                    TA
                      ____________________________________________________________
consensus                                                                       TA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          GCCACCCGGAAGCTCCTTTTACACTAACTATAACCAAATTTACAGTAAAGGAGGAATATG
                      ____________________________________________________________
consensus             GCCACCCGGAAGCTCCTTTTACACTAACTATAACCAAATTTACAGTAAAGGAGGAATATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          CTTCAGTTCAGGTGAAAATCTGTTTGGTTTATGTTATCCCTTCAAATTGAGATTCTTAAG
                      ____________________________________________________________
consensus             CTTCAGTTCAGGTGAAAATCTGTTTGGTTTATGTTATCCCTTCAAATTGAGATTCTTAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          GATAGCTATAGAGAAAGAGCAAGAAACGGAGCACCTTCAGACTTAATCAATCAATGCCCA
                      ____________________________________________________________
consensus             GATAGCTATAGAGAAAGAGCAAGAAACGGAGCACCTTCAGACTTAATCAATCAATGCCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          GGCTTGAGTAAGGCTCAAAACCACCAGCGCAATCATCATGAACACGCCATATGGTTTCTC
                      ____________________________________________________________
consensus             GGCTTGAGTAAGGCTCAAAACCACCAGCGCAATCATCATGAACACGCCATATGGTTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          CCAGGAGGTTTGCAACAGACAGCACGGTCAACTCAGGAAAGTAATTCTGCTCTGCAACAG
                      ____________________________________________________________
consensus             CCAGGAGGTTTGCAACAGACAGCACGGTCAACTCAGGAAAGTAATTCTGCTCTGCAACAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          GAATGGTATTTGTGACAATTACCTCTTGAAAGAGGCCACTTGATAACCTCTCTATTGCAG
                      ____________________________________________________________
consensus             GAATGGTATTTGTGACAATTACCTCTTGAAAGAGGCCACTTGATAACCTCTCTATTGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          GAGGGCTGAAAACAGCATGAGTGCTGCATGCATACACCTCCCTTGCTCCCTCTTGATGTA
                      ____________________________________________________________
consensus             GAGGGCTGAAAACAGCATGAGTGCTGCATGCATACACCTCCCTTGCTCCCTCTTGATGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          ATAGTGCAGCTCCTTTGGCAATAGTACCAGCAGTATCAATCATGTCATCAACCATAACTG
                      ____________________________________________________________
consensus             ATAGTGCAGCTCCTTTGGCAATAGTACCAGCAGTATCAATCATGTCATCAACCATAACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          CTACCTTTCCCCTGACGTCACCAATCAAATTCATTACCTCAGCAACATTGTGTGCATAGC
                      ____________________________________________________________
consensus             CTACCTTTCCCCTGACGTCACCAATCAAATTCATTACCTCAGCAACATTGTGTGCATAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          GCCTTTTATCCACGATGGCTAGAGGTGCATCAGACAACTTTTTGGCAAAAGCCCGTGCCC
JMSF027C21+                     CACGATGGCTAGAGGTGCATCAGACAACTTTTTGGCAAAAGCCCGTGCCC
                      ____________________________________________________________
consensus             GCCTTTTATCCACGATGGCTAGAGGTGCATCAGACAACTTTTTGGCAAAAGCCCGTGCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          TTGCAACTCCACCAACATCCGGCGACACCACAACCAAATCATCAGAACAGATAGTCTTGC
JMSF027C21+           TTGCAACTCCACCAACATCCGGCGACACCACAACCAAATCATCAGAACAGATAGTCTTGC
                      ____________________________________________________________
consensus             TTGCAACTCCACCAACATCCGGCGACACCACAACCAAATCATCAGAACAGATAGTCTTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          TGGCAAGATAATCAAGTATAACAGGCTGACCATGTACATGGTCCACTGGAATGTCAAAAT
JMSF027C21+           TGGCAAGATAATCAAGTATAACAGGCTGACCATGTACATGGTCCACTGGAATGTCAAAAT
                      ____________________________________________________________
consensus             TGGCAAGATAATCAAGTATAACAGGCTGACCATGTACATGGTCCACTGGAATGTCAAAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF027C21-          AGCCCATGGACTGGCCAGAATGAA                                    
JMSF027C21+           AGCCCATGGACTGGCCAGAATGAAGATCACAAGCAAGAACACGGTCAGCACCAGCTTCAG
JMFF049G14+                         CCAGAATGAATATCACAAGCAAGAACTCTATCCGCACCAGCTTCAG
                      ____________________________________________________________
consensus             AGCCCATGGACTGGCCAGAATGAATATCACAAGCAAGAACTCTGTCCGCACCAGCTTCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027C21+           TAATCAGATTAGCAACAAGTTTGGCTGCAATGGATTCACGGCCTTGAGTCTTCCGATCAG
JMFF049G14+           TAATCAGATTTGCTACGAGTTTGGCTGCAATGGAATCATGACCTTCAGTCTT---ATCAG
                      ____________________________________________________________
consensus             TAATCAGATTTGCTACGAGTTTGGCTGCAATGGATTCATGGCCTTGAGTCTTCCGATCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027C21+           CTCGAGCATAACCAAAGTAAGGAATAACTGCAGTAATATTTTTGGCAGAGGCTCTGCGAC
JMFF049G14+           CTCGGCCATAGCCAAAGTAAGGAATTACTGCAGTAATACTTTTTGCAGAGGCCCTTCGAC
                      ____________________________________________________________
consensus             CTCGGGCATAGCCAAAGTAAGGAATTACTGCAGTAATATTTTTTGCAGAGGCTCTTCGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027C21+           AAGCATCAATCATTATCAAGAGCTCCATAAGATTTTCATTTGCAGGAGGACAAGTAGGTT
JMFF049G14+           TAGCATCAATCATTATCAGAAGCTCCATAAGATTTTCATTTGCAGGAGGGCAAGAAGGTT
                      ____________________________________________________________
consensus             TAGCATCAATCATTATCAGGAGCTCCATAAGATTTTCATTTGCAGGAGGGCAAGTAGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027C21+           GCACAAGATATACATCACAACCTCTGACACTTTCTTGTAACTGGACATATATTTCACCAT
JMFF049G14+           GAACAAGACATACATCACAACCTCTGATGCTTTCTTGGAACTGAACATAAATTTCACCAT
                      ____________________________________________________________
consensus             GCACAAGATATACATCACAACCTCTGATGCTTTCTTGTAACTGGACATATATTTCACCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF027C21+           CAGCAAAACGTTT                                               
JMFF049G14+           CAGCAAAACGTTTTATCAGGACTCTTCCAAGTTGTAAACCCATGTAAGTCGCAATTCCCT
                      ____________________________________________________________
consensus             CAGCAAAACGTTTTATCAGGACTCTTCCAAGTTGTAAACCCATGTAAGTCGCAATTCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049G14+           GAGCAAGTGCACGATTAGCCGTCCCAGAAAAAAATCCGGAGCCTGTCTTTCTGTTTCTGC
                      ____________________________________________________________
consensus             GAGCAAGTGCACGATTAGCCGTCCCAGAAAAAAATCCGGAGCCTGTCTTTCTGTTTCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049G14+           TGAACAATAAGTCTCTGGAGCTGATCGGAAGTCAGGGAGGTCAGAAGCTTCTGAATACGA
                      ____________________________________________________________
consensus             TGAACAATAAGTCTCTGGAGCTGATCGGAAGTCAGGGAGGTCAGAAGCTTCTGAATACGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049G14+           ACACTGTCAGCCAGGCTAGGCGCGCCTGCCCATCCATTGAATTGCTCTGCATTACACCTG
                      ____________________________________________________________
consensus             ACACTGTCAGCCAGGCTAGGCGCGCCTGCCCATCCATTGAATTGCTCTGCATTACACCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049G14+           ATCGAAGATTTCGCTGCGGAGAGTTTGCGGTTCAGTATGCAACTTGCAGGTAATCGCAGA
                      ____________________________________________________________
consensus             ATCGAAGATTTCGCTGCGGAGAGTTTGCGGTTCAGTATGCAACTTGCAGGTAATCGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF049G14+           GACGCCATTGATTCTGGAGTTTTCCTACAGAGAAGACTAGGTGTTTGGGGGTTTGTAGTA
                      ____________________________________________________________
consensus             GACGCCATTGATTCTGGAGTTTTCCTACAGAGAAGACTAGGTGTTTGGGGGTTTGTAGTA