Contig 012991:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009C22Sequence701012991 (4)ref|XP_009335873.1|5e-34PREDICTED: ocs element-binding factor 1 [Pyrus x bretschneideri]
JMFF048M12Sequence378012991 (4)348021337
JMFN004L19Sequence618012991 (4)ref|XP_008444748.1|3e-46PREDICTED: ocs element-binding factor 1 [Cucumis melo]
JMFN040G01Sequence615012991 (4)ref|XP_008388015.1|77.8PREDICTED: uncharacterized protein LOC103450445 [Malus domestica]

Alignment

This contig is upended


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rJMFF009C22-                       AAATATAAAATACATTATACATCCACAACCATTCATTCCATCATATT
                      ____________________________________________________________
consensus                          AAATATAAAATACATTATACATCCACAACCATTCATTCCATCATATT
 
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rJMFF009C22-          CTACAAACCCCTTTAGCCCCATCCACTCCCCAATGGATTCCTTACAGATCCCAAATCTAA
                      ____________________________________________________________
consensus             CTACAAACCCCTTTAGCCCCATCCACTCCCCAATGGATTCCTTACAGATCCCAAATCTAA
 
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rJMFF009C22-          TCATAATACTAATAATAATAATTATAATATAATAACAATGATAATAACAATAATAATATA
                      ____________________________________________________________
consensus             TCATAATACTAATAATAATAATTATAATATAATAACAATGATAATAACAATAATAATATA
 
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rJMFF009C22-          AAGATAAAGATAATGCCAGTTATGCCCCTAACACCCAAGCAAGGCACCACCACCACACAC
                      ____________________________________________________________
consensus             AAGATAAAGATAATGCCAGTTATGCCCCTAACACCCAAGCAAGGCACCACCACCACACAC
 
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rJMFF009C22-          CTTAAGATCAAGCTGGAAACACCAAAATCTGGAGAATATTAAAGCTGGCAGATCAGACAA
                      ____________________________________________________________
consensus             CTTAAGATCAAGCTGGAAACACCAAAATCTGGAGAATATTAAAGCTGGCAGATCAGACAA
 
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rJMFF009C22-          TCAATTCTTTTGTCTTTTTTAAAATTTTCAGTACTGGAAGAAATTATCTGCAGAAGCCAT
                      ____________________________________________________________
consensus             TCAATTCTTTTGTCTTTTTTAAAATTTTCAGTACTGGAAGAAATTATCTGCAGAAGCCAT
 
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rJMFF009C22-          GATGGGTTGCTGGTTCATCATGAACATCCATGGGCTGTTGGTGGTGTTGATGAGAGTCTG
JMFN004L19+                                   CATCCATGGGCTGTTGGTGGTGTTGATGAGAGTCTG
                      ____________________________________________________________
consensus             GATGGGTTGCTGGTTCATCATGAACATCCATGGGCTGTTGGTGGTGTTGATGAGAGTCTG
 
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rJMFF009C22-          GTGATTTCCGGTGGGGATATCGTCGTAGACATCGAAGAAGCCATGGGTGCCGGCGGGGGA
JMFN004L19+           GTGATTTCCGGTGGGGATATCGTCGTAGACATCGAAGAAGCCATGGGTGCCGGCGGGGGA
                      ____________________________________________________________
consensus             GTGATTTCCGGTGGGGATATCGTCGTAGACATCGAAGAAGCCATGGGTGCCGGCGGGGGA
 
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rJMFF009C22-          GGAGGAGGAGGAGTTCATCCGGCTGAGGATGTCATTCAGAGACTGAAGCCTTTGGCTCAG
JMFN004L19+           GGAGGAGGAGGAGTTCATCCGGCTGAGGATGTCATTCAGAGACTGAAGCCTTTGGCTCAG
                      ____________________________________________________________
consensus             GGAGGAGGAGGAGTTCATCCGGCTGAGGATGTCATTCAGAGACTGAAGCCTTTGGCTCAG
 
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rJMFF009C22-          CTCCATCATCTGAGCCCTCAGAACGGAATTCTCAGCCTCCACATTCATGAAATCCCGCGC
JMFN004L19+           CTCCATCATCTGAGCCCTCAGAACGGAATTCTCAGCCTCCACATTCATGAAATCCCGCGC
                      ____________________________________________________________
consensus             CTCCATCATCTGAGCCCTCAGAACGGAATTCTCAGCCTCCACATTCATGAAATCCCGCGC
 
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rJMFF009C22-          CGTCGAGCTGATCTTGCTCAGGATCTGCGCGTTCTCCTTCTTCAGCGCCGCCGCCTGCGC
JMFN004L19+           CGTCGAGCTGATCTTGCTCAGGATCTGCGCGTTCTCCTTCTTCAGCGCCGCCGCCTGCGC
                      ____________________________________________________________
consensus             CGTCGAGCTGATCTTGCTCAGGATCTGCGCGTTCTCCTTCTTCAGCGCCGCCGCCTGCGC
 
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rJMFF009C22-          CATCAGCTCGTCCAGGTGCTGCTGCTTCCTCATCCGCGACCGCCGCGCCGACTC      
JMFN004L19+           CATCAGCTCGTCCAGGTGCTGCTGCTTCCTCATCCGCGACCGCCGCGCCGACTCCCGGTT
                      ____________________________________________________________
consensus             CATCAGCTCGTCCAGGTGCTGCTGCTTCCTCATCCGCGACCGCCGCGCCGACTCCCGGTT
 
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JMFN004L19+           CGACTGCATCCGCTTCCGCTTCCGCTCGTTCATCAGCACCTGCAAATCCTCCTCCGACCC
JMFN040G01+                                                  CTGCAAATCCTCCTCCGACCC
                      ____________________________________________________________
consensus             CGACTGCATCCGCTTCCGCTTCCGCTCGTTCATCAGCACCTGCAAATCCTCCTCCGACCC
 
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JMFN004L19+           CGAGTTCGTCAGTTGAGTCCACCCGGACGAGTTCCCGCTTGAACACGCCATTTTTTCCGC
JMFN040G01+           CGAGTTCGTCAGTTGAGTCCACCCGGACGAGTTCCCGCTTGAACACGCCATTTTTTCCGC
                      ____________________________________________________________
consensus             CGAGTTCGTCAGTTGAGTCCACCCGGACGAGTTCCCGCTTGAACACGCCATTTTTTCCGC
 
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JMFN004L19+           TTGTATTTACACCGTTAAAATGCAGAAATCTTGAATCTCTGTTAAAAAAAAACCCTAGAA
JMFN040G01+           TTGTATTTACACCGTTAAAATGCAGAAATCTTGAATCTCTGTTAAAAAAAAACCCTAGAA
                      ____________________________________________________________
consensus             TTGTATTTACACCGTTAAAATGCAGAAATCTTGAATCTCTGTTAAAAAAAAACCCTAGAA
 
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JMFN004L19+           GAAGAAACGCAG                                                
JMFN040G01+           GAAGAAACGCAGGACCCGACTAGAAAAACCGCTATTTGTTCCGAGAAAAGGAAAATCTAT
                      ____________________________________________________________
consensus             GAAGAAACGCAGGACCCGACTAGAAAAACCGCTATTTGTTCCGAGAAAAGGAAAATCTAT
 
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JMFN040G01+           GTGTTCTAACTTAATTTAAAACCTAGATTATGCAGATCAAAGCGTAGTCAATTTCTGAGA
                      ____________________________________________________________
consensus             GTGTTCTAACTTAATTTAAAACCTAGATTATGCAGATCAAAGCGTAGTCAATTTCTGAGA
 
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JMFN040G01+           AAACATAAAACCAGTAGAGGAAGACGACGGAGAAAGATTGAACAAGATGGGTCCTGCGTA
                      ____________________________________________________________
consensus             AAACATAAAACCAGTAGAGGAAGACGACGGAGAAAGATTGAACAAGATGGGTCCTGCGTA
 
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JMFN040G01+           TGAAAGAGGAACTGATCATAAAACCGGAACGGAGGATTTCACTAAGAACAGGAGACATGA
                      ____________________________________________________________
consensus             TGAAAGAGGAACTGATCATAAAACCGGAACGGAGGATTTCACTAAGAACAGGAGACATGA
 
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JMFN040G01+           ATCTCAAACATCAAAAACACAGTACGCAGCATCAATCAAGGATTGATTTCGTTTGTTCAA
JMFF048M12+                                  ACGCAGCATCAATCAAGGATTGATTTCGTTTGTTCAA
                      ____________________________________________________________
consensus             ATCTCAAACATCAAAAACACAGTACGCAGCATCAATCAAGGATTGATTTCGTTTGTTCAA
 
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JMFN040G01+           GAAGATCAAAACACAAATTAAACTAACAGATCTTTCTTCTTAACCAAGAAATCTGAGCTC
JMFF048M12+           GAAGATCAAAACACAAATTAAACTAACAGATCTTTCTTCTTAACCAAGAAATCTGAGCTC
                      ____________________________________________________________
consensus             GAAGATCAAAACACAAATTAAACTAACAGATCTTTCTTCTTAACCAAGAAATCTGAGCTC
 
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JMFN040G01+           AGAGATGGGAGATCTGAGAAGGAGATCGTAGAGAAGAAAATTAGGGGGAAAGAAGCAAAG
JMFF048M12+           AGAGATGGGAGATCTGAGAAGGAGATCGTAGAGAAGAAAATTAGGGGGAAAGAAGCAAAG
                      ____________________________________________________________
consensus             AGAGATGGGAGATCTGAGAAGGAGATCGTAGAGAAGAAAATTAGGGGGAAAGAAGCAAAG
 
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JMFN040G01+           CAGTATGAGGATATAAGTTGAAAGCTTGAAAGCTATAAGGGAAAGAGAAGAAGA      
JMFF048M12+           CAGTATGAGGATATAAGTTGAAAGCTTGAAAGCTATAAGGGAAAGAGAAGAAGAGTAGGA
                      ____________________________________________________________
consensus             CAGTATGAGGATATAAGTTGAAAGCTTGAAAGCTATAAGGGAAAGAGAAGAAGAGTAGGA