Contig 012989:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041D03Sequence646012989 (5)ref|XP_004238938.1|5e-113PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Solanum lycopersicum]615008374 (5)ref|XP_009610945.1|2e-94PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana tomentosiformis]
JMFF048G18Sequence188012989 (5)ref|XP_010681571.1|4e-09PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Beta vulgaris subsp. vulgaris]248008374 (5)ref|XP_009610945.1|8e-06PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana tomentosiformis]
JMFN031B01Sequence609012989 (5)gb|KDO69969.1|5e-88hypothetical protein CISIN_1g021653mg [Citrus sinensis]
JMFS117H03Sequence621012989 (5)ref|XP_004238938.1|6e-109PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Solanum lycopersicum]
JMSF049K17Sequence648012989 (5)ref|XP_004238938.1|3e-112PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Solanum lycopersicum]722008374 (5)ref|XP_009610945.1|5e-114PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFN031B01-            TTCAATAATGTTTATTATATTTCACCCAAAAAAAAAAAAAATGCTCCGTTTGTATGTTA
                      ____________________________________________________________
consensus              TTCAATAATGTTTATTATATTTCACCCAAAAAAAAAAAAAATGCTCCGTTTGTATGTTA
 
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JMFN031B01-           CCATATATGTTAAATTAAATAGATGTGGGAAAAATAAAATTAAAAGACTTACTGCATGTG
                      ____________________________________________________________
consensus             CCATATATGTTAAATTAAATAGATGTGGGAAAAATAAAATTAAAAGACTTACTGCATGTG
 
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JMFN031B01-           TTTAGTATGAAGAAGGTTCCCGGCGAGCGAAATAGCAGCATCAATCTGGTGGTTCTGATA
                      ____________________________________________________________
consensus             TTTAGTATGAAGAAGGTTCCCGGCGAGCGAAATAGCAGCATCAATCTGGTGGTTCTGATA
 
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JMFN031B01-           AAGCAAGGCGGGATTGGAAACCATGGGCACCTTCCTCTTCTTGTAGGCGGCGACGCAGAC
                      ____________________________________________________________
consensus             AAGCAAGGCGGGATTGGAAACCATGGGCACCTTCCTCTTCTTGTAGGCGGCGACGCAGAC
 
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JMFN031B01-           TTGCACAAGGCGCGTGAAGGGGCTGCCGGCGGGGTCCAGATTCCGGTACAAAGGGTAGCC
                      ____________________________________________________________
consensus             TTGCACAAGGCGCGTGAAGGGGCTGCCGGCGGGGTCCAGATTCCGGTACAAAGGGTAGCC
 
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JMFN031B01-           GAAGATGAAGGCGAGGATTGAGAGAGCCATGGCTATGGTTGGGACACCAAACCCCCAACC
                      ____________________________________________________________
consensus             GAAGATGAAGGCGAGGATTGAGAGAGCCATGGCTATGGTTGGGACACCAAACCCCCAACC
 
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JMFN031B01-           CCAACCAATGTTATCTTGTATATACACCACCACCGTGACGGCCACCAGCATGGATGACCC
JMFS117H03+                           TGTATATACACCACCACCGTGACGGCCACCAGCATGGATGACCC
JMFF041D03+               CCAATGTTATCTTGTATATACACCACCACCGTGACGGCCACCAGCATGGATGACCC
JMSF049K17+               CCAATGTTATCTTGTATATACACCACCACCGTGACGGCCACCAGCATGGATGACCC
                      ____________________________________________________________
consensus             CCAACCAATGTTATCTTGTATATACACCACCACCGTGACGGCCACCAGCATGGATGACCC
 
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JMFN031B01-           CATGCAGAAGTAGTACCAGTTGAAGAATCTTCAGGTTTTTGTCTTCTGATTGGGGTCGAA
JMFS117H03+           CATGCAGAAGTAGTACCAGTTGAAGAATCTCCAGGTTTTTGTCTTCTGATTGGGGTCGAA
JMFF041D03+           CATGCAGAAGTAGTACCAGTTGAAGAATCTCCAGGTTTTTGTCTTCTGATTGGGGTCGAA
JMSF049K17+           CATGCAGAAGTAGTACCAGTTGAAGAATCTCCAGGTTTTTGTCTTCTGATTGGGGTCGAA
                      ____________________________________________________________
consensus             CATGCAGAAGTAGTACCAGTTGAAGAATCTCCAGGTTTTTGTCTTCTGATTGGGGTCGAA
 
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JMFN031B01-           TTGGTCGGCGCCGAACGCCACCACGCACGGCCGGATTCCACCCGAACCCAGGGCGGTTAG
JMFS117H03+           TTGGTCGGCGCCGAACGCCACCACGCACGGCCGGATTCCACCCGAACCCAGGGCGGTTAG
JMFF041D03+           TTGGTCGGCGCCGAACGCCACCACGCACGGCCGGATTCCACCCGAACCCAGGGCGGTTAG
JMSF049K17+           TTGGTCGGCGCCGAACGCCACCACGCACGGCCGGATTCCACCCGAACCCAGGGCGGTTAG
                      ____________________________________________________________
consensus             TTGGTCGGCGCCGAACGCCACCACGCACGGCCGGATTCCACCCGAACCCAGGGCGGTTAG
 
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JMFN031B01-           GAGGAGGGAGACATAGAGGATGGCGACTTGGCCGGAGTTTGCTTCCTGGCAA        
JMFS117H03+           GAGGAGGGAGACATAGAGGATGGCGACTTGGCCGGAGTTTGCTTCCTGGCAAACTTGGTC
JMFF041D03+           GAGGAGGGAGACATAGAGGATGGCGACTTGGCCGGAGTTTGCTTCCTGGCAAACTTGGTC
JMSF049K17+           GAGGAGGGAGACATAGAGGATGGCGACTTGGCCGGAGTTTGCTTCCTGGCAAACTTGGTC
                      ____________________________________________________________
consensus             GAGGAGGGAGACATAGAGGATGGCGACTTGGCCGGAGTTTGCTTCCTGGCAAACTTGGTC
 
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JMFS117H03+           GGGCTTGCATGGTGGAGGTCTTAGTTTTGGAAGTATTGCTGAAGTTGTTAACAGAGTCAT
JMFF041D03+           GGGCTTGCATGGTGGAGGTCTTAGTTTTGGAAGTATTGCTGAAGTTGTTAACAGAGTCAT
JMSF049K17+           GGGCTTGCATGGTGGAGGTCTTAGTTTTGGAAGTATTGCTGAAGTTGTTAACAGAGTCAT
                      ____________________________________________________________
consensus             GGGCTTGCATGGTGGAGGTCTTAGTTTTGGAAGTATTGCTGAAGTTGTTAACAGAGTCAT
 
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JMFS117H03+           TCCTAGTTGATAAATGATTGAGGCAATAGTGATAGTCCAAAATCTCCCGGCGAAGGTGTC
JMFF041D03+           TCCTAGTTGATAAATGATTGAGGCAATAGTGATAGTCCAAAATCTCCCGGCGAAGGTGTC
JMSF049K17+           TCCTAGTTGATAAATGATTGAGGCAATAGTGATAGTCCAAAATCTCCCGGCGAAGGTGTC
                      ____________________________________________________________
consensus             TCCTAGTTGATAAATGATTGAGGCAATAGTGATAGTCCAAAATCTCCCGGCGAAGGTGTC
 
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JMFS117H03+           GGCAAGAAAAGCTCCAAGCAAGGGGGTCAAGCTGGCGGTTCCGCCGAAGTTGGTGAGAGT
JMFF041D03+           GGCAAGAAAAGCTCCAAGCAAGGGGGTCAAGCTGGCGGTTCCGCCGAAGTTGGTGAGAGT
JMSF049K17+           GGCAAGAAAAGCTCCAAGCAAGGGGGTCAAGCTGGCGGTTCCGCCGAAGTTGGTGAGAGT
                      ____________________________________________________________
consensus             GGCAAGAAAAGCTCCAAGCAAGGGGGTCAAGCTGGCGGTTCCGCCGAAGTTGGTGAGAGT
 
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JMFS117H03+           ATTGGCCGCTTTAGTTAGTGGAAGATGCAATTGAGTTGTCAAATATATGATCATGTTTGC
JMFF041D03+           ATTGGCCGCTTTAGTTAGTGGAAGATGCAATTGAGTTGTCAAATATATGATCATGTTTGC
JMSF049K17+           ATTGGCCGCTTTAGTTAGTGGAAGATGCAATTGAGTTGTCAAATATATGATCATGTTTGC
JMFF048G18+                                                               ATGTTTGC
                      ____________________________________________________________
consensus             ATTGGCCGCTTTAGTTAGTGGAAGATGCAATTGAGTTGTCAAATATATGATCATGTTTGC
 
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JMFS117H03+           AGCAAATCCCACTACGGCCAACTTCTCACACACTTCATTCGCAAATATGAATGGCATGGT
JMFF041D03+           AGCAAATCCCACTACGGCCAACTTCTCACACACTTCATTCGCAAATATGAATGGCATGGT
JMSF049K17+           AGCAAATCCCACTACGGCCAACTTCTCACACACTTCATTCGCAAATATGAATGGCATGGT
JMFF048G18+           AGCAAATCCCACTGCGGCCAAGTTCTCACACACTTCATTCGCAAATATGAATGGCATGGT
                      ____________________________________________________________
consensus             AGCAAATCCCACTACGGCCAACTTCTCACACACTTCATTCGCAAATATGAATGGCATGGT
 
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JMFS117H03+           GATCATCCCGCCCTTCACCCTTTCTACTTTGCCACTTTTTTTCGCCGCCATCTCTTCATT
JMFF041D03+           GATCATCCCGCCCTTCACCCTTTCTACTTTGCCACTTTTTTTCGCCGCCATCTCTTCATT
JMSF049K17+           GATCATCCCGCCCTTCACCCTTTCTACTTTGCCACTTTTTTTCGCCGCCATCTCTTCATT
JMFF048G18+           GATCATCCCGCCCTTCACCCTTTCTACTTTCCCACTTTTTTTCGCCGCCATCTCCTCATT
                      ____________________________________________________________
consensus             GATCATCCCGCCCTTCACCCTTTCTACTTTGCCACTTTTTTTCGCCGCCATCTCTTCATT
 
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JMFS117H03+           CATTTTGATATGATGTAGCGTAGCTTAGCTACT                           
JMFF041D03+           CATTTTGATATGATGTAGCGTAGCTTAGCTACT                           
JMSF049K17+           CATTTTGATATGATGTAGCGTAGCTTAGCTACT                           
JMFF048G18+           CATTCTGATATGATGTAGCGTAGCTTAGCTACTCCGTCCGTTCTAGCTTCTGTTCTCGCG
                      ____________________________________________________________
consensus             CATTTTGATATGATGTAGCGTAGCTTAGCTACTCCGTCCGTTCTAGCTTCTGTTCTCGCG