| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF010D10 | Sequence | 539 | 012983 (6) | ref|XP_006382263.1| | 2e-22 | hypothetical protein POPTR_0005s00470g [Populus trichocarpa] ref|XP_011039040.1| | 713 | 012983 (6) | ref|XP_006382263.1| | 6e-52 | hypothetical protein POPTR_0005s00470g [Populus trichocarpa] ref|XP_011039040.1| |
| JMFF047B22 | Sequence | 611 | 012983 (6) | ref|XP_006382263.1| | 2e-37 | hypothetical protein POPTR_0005s00470g [Populus trichocarpa] ref|XP_011039040.1| | 546 | 012983 (6) | ref|XP_006382263.1| | 1e-52 | hypothetical protein POPTR_0005s00470g [Populus trichocarpa] ref|XP_011039040.1| |
| JMSF012D17 | Sequence | 463 | 012983 (6) | 749 | 019257 | ref|XP_006382263.1| | 8e-52 | hypothetical protein POPTR_0005s00470g [Populus trichocarpa] ref|XP_011039040.1| | |||
| JMSF028C20 | Sequence | 697 | 012064 (7) | ref|XP_009596681.1| | 4e-79 | PREDICTED: NAC domain-containing protein 74-like [Nicotiana tomentosiformis] | 763 | 012983 (6) | ref|XP_004235375.1| | 90.1 | PREDICTED: uncharacterized protein LOC101251266 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF028C20- TAATCTTGAGG
____________________________________________________________
consensus TAATCTTGAGG
. : . : . : . : . : . :
rJMSF028C20- CAATGTATATACAAGGTATCTTATATCATAAAGAAAAGGGGAATGTAGATTAAAAGCCGA
____________________________________________________________
consensus CAATGTATATACAAGGTATCTTATATCATAAAGAAAAGGGGAATGTAGATTAAAAGCCGA
. : . : . : . : . : . :
rJMSF028C20- TATATTTGTGTAAAGAATGACAAGAACCTTTGCTCCAAGTGAAGTAGGAAAAACAAAGCA
____________________________________________________________
consensus TATATTTGTGTAAAGAATGACAAGAACCTTTGCTCCAAGTGAAGTAGGAAAAACAAAGCA
. : . : . : . : . : . :
rJMSF028C20- TGTTGATTTGTCCAATGCCCTGCCCAAGAAATTAAAGAGAGCATTAACAACAGAAATTAG
____________________________________________________________
consensus TGTTGATTTGTCCAATGCCCTGCCCAAGAAATTAAAGAGAGCATTAACAACAGAAATTAG
. : . : . : . : . : . :
rJMSF028C20- GAAGCCCAATGTAATCTTTAGAGCCATAATGGCATCTTGTATAGTTGTATTATAGAGTCT
____________________________________________________________
consensus GAAGCCCAATGTAATCTTTAGAGCCATAATGGCATCTTGTATAGTTGTATTATAGAGTCT
. : . : . : . : . : . :
rJMSF028C20- GCATTTTTGGAAACACACAATCTTATGGATTTAAAAGGAAATTGAATGAAATAGAATAAC
____________________________________________________________
consensus GCATTTTTGGAAACACACAATCTTATGGATTTAAAAGGAAATTGAATGAAATAGAATAAC
. : . : . : . : . : . :
rJMSF028C20- ATTGAAGTAGTGCATGGACAAATACATTATCAGCAGTCAGTAACAAAGTCATTATCTATG
____________________________________________________________
consensus ATTGAAGTAGTGCATGGACAAATACATTATCAGCAGTCAGTAACAAAGTCATTATCTATG
. : . : . : . : . : . :
rJMSF028C20- TCATATATTATTCAAAAGGCAGCAATACAAACTCCTAGAACAAGCACAGAAGTGACAGTA
____________________________________________________________
consensus TCATATATTATTCAAAAGGCAGCAATACAAACTCCTAGAACAAGCACAGAAGTGACAGTA
. : . : . : . : . : . :
rJMSF028C20- AAGACAATAATCAATTCATTTATTCAACTCGGGCAACCTCCATAACTCCAAGCGTAAGAC
rJMFF047B22- CTCCATAACTCCAAGTGCAAGAC
rJMFF010D10- CTCCATAACTCCAAGTGCAAGAC
____________________________________________________________
consensus AAGACAATAATCAATTCATTTATTCAACTCGGGCAACCTCCATAACTCCAAGTGCAAGAC
. : . : . : . : . : . :
rJMSF028C20- CCCAACTGCCATCATAGGGTAGTCAAAGCTTGTGAATAGGCAACACTATCCTTTCTTGTC
rJMFF047B22- CCCAATTGCCATCATAGGATAGTCAAAGCTTGTGAATAGGCAGCACTATCCTTTTTTGTC
rJMFF010D10- CCCAATTGCCATCATAGGATAGTCAAAGCTTGTGAATAGGCAGCACTATCCTTTTTTGTC
____________________________________________________________
consensus CCCAATTGCCATCATAGGATAGTCAAAGCTTGTGAATAGGCAGCACTATCCTTTTTTGTC
. : . : . : . : . : . :
rJMSF028C20- ATAAGCAGCGATATTTTGAGGCTCACATTCTGGACTAAACAGGCGAACCAGCAATGCGGT
rJMFF047B22- ATAAGCAGCTATATTTTGAGGTTCACATTCTGGACTAAACAGGCGAACCAGCAATGCGGT
rJMFF010D10- ATAAGCAGCTATATTTTGAGGTTCACATTCTGGACTAAACAGGCGAACCAGCAATGCGGT
JMFF047B22+ CAGCAATGCGGT
____________________________________________________________
consensus ATAAGCAGCTATATTTTGAGGTTCACATTCTGGACTAAACAGGCGAACCAGCAATGCGGT
. : . : . : . : . : . :
rJMSF028C20- GGTAGAGCTCGTAGAGACTGCTCCACAAGCCCCCCACCTAAAACTTCGAGGATTTGTGAT
rJMFF047B22- GGTAGAGCTTGTAGAGACTGCTCCACAAGCTCCCCACCTAAAACTTCGAGGATTTGTGAT
rJMFF010D10- GGTAGAGCTTGTAGAGACTGCTCCACAAGCTCCCCACCTAAAACTTCGAGGATTTGTGAT
JMFF010D10+ T
JMFF047B22+ GGTAGAGCTTGTAGAGACTGCTCCACAAGCTCCCCACCTAAAACTTCGAGGATTTGTGAT
____________________________________________________________
consensus GGTAGAGCTTGTAGAGACTGCTCCACAAGCTCCCCACCTAAAACTTCGAGGATTTGTGAT
. : . : . : . : . : . :
rJMSF028C20- TCTAGGGCC
rJMFF047B22- TCTAGGGCCGTAGTGCAAGCGGCACAGCACCCAAAAGCCTAATGCTCCTCCAACTGAGAA
rJMFF010D10- TCTAGGGCCGTAGTGCAAGCGGCACAGCACCCAAAAGCCTAATGCTCCTCCAACTGAGAA
JMFF010D10+ TCTAGGGCCGTAGTGCAAGCGGCACAGCACCCAAAAGCNTAATGCTCCTCCAACTGAGAA
JMFF047B22+ TCTAGGGCCGTAGTGCAAGCGGCACAGCACCCAAAAGCCTAATGCTCCTCCAACTGAGAA
____________________________________________________________
consensus TCTAGGGCCGTAGTGCAAGCGGCACAGCACCCAAAAGCCTAATGCTCCTCCAACTGAGAA
. : . : . : . : . : . :
rJMFF047B22- TATTGCAGCAGTCTGTCTCGTCAATCTGGAACAAGTCTTACAATCTGATCTCATCACCTC
rJMFF010D10- TATTGCAGCAGTCTGTCTCGTCAATCTGGAACAAGTCTTACAATCTGATCTCATCACCTC
JMFF010D10+ TATTGCAGCAGTCTGTCTCGTCAATCTGGAACAAGTCTTACAATCTGATCTCATCACCTC
JMFF047B22+ TATTGCAGCAGTCTGTCTCGTCAATCTGGAACAAGTCTTACAATCTGATCTCATCACCTC
____________________________________________________________
consensus TATTGCAGCAGTCTGTCTCGTCAATCTGGAACAAGTCTTACAATCTGATCTCATCACCTC
. : . : . : . : . : . :
rJMFF047B22- CCCATCAGAAAATCCACACAATTGCCTCAATGCCATGGTGCACCTTAATTCCTCAGCAGG
rJMFF010D10- CCCATCAGAAAATCCACACAATTGCCTCAATGCCATGGTGCACCTTAATTCCTCAGCAGG
JMSF012D17+ CCTCAGCAGG
JMFF010D10+ CCCATCAGAAAATCCACACAATTGCCTCAATGCCATGGTGCACCTTAATTCCTCAGCAGG
JMFF047B22+ CCCATCAGAAAATCCACACAATTGCCTCAATGCCATGGTGCACCTTAATTCCTCAGCAGG
____________________________________________________________
consensus CCCATCAGAAAATCCACACAATTGCCTCAATGCCATGGTGCACCTTAATTCCTCAGCAGG
. : . : . : . : . : . :
rJMFF047B22- TAAACGACGTCGCATGAAGGGGGAAGGTGAGAGCCGTTGGGCATTAAG
rJMFF010D10- TAAACGACGTCGCATGAAGGGGGAAGGTGAGAGCCGTTGGGCATTAAGTGGAACGACACC
JMSF012D17+ TAAACGACGTCGCATGAAGGGGGAAGGTGAGAGCCGTTGGGCATTAAGTGGAACGACACC
JMFF010D10+ TAAACGACGTCGCATGAAGGGGGAAGGTGAGAGCCGTTGGGCATTAAGTGGAACGACACC
JMFF047B22+ TAAACGACGTCGCATGAAGGGGGAAGGTGAGAGCCGTTGGGCATTAAGTGGAACGACACC
____________________________________________________________
consensus TAAACGACGTCGCATGAAGGGGGAAGGTGAGAGCCGTTGGGCATTAAGTGGAACGACACC
. : . : . : . : . : . :
rJMFF010D10- GTTTCGAAGGAGGGTAACGGCTGTGCACCAGACGACCGCGTTTTGATCAAGGGCTAGGGA
JMSF012D17+ GTTTCGAAGGAGGGTAACGGCTGTGCACCAGACGACCGCGTTTTGATCAAGGGCTAGGGA
JMFF010D10+ GTTTCGAAGGAGGGTAACGGCTGTGCACCAGACGACCGCGTTTTGATCAAGGGCTAGGGA
JMFF047B22+ GTTTCGAAGGAGGGTAACGGCTGTGCACCAGACGACCGCGTTTTGATCAAGGGCTAGGGA
____________________________________________________________
consensus GTTTCGAAGGAGGGTAACGGCTGTGCACCAGACGACCGCGTTTTGATCAAGGGCTAGGGA
. : . : . : . : . : . :
rJMFF010D10- AAGCTACTGCCGCTTTCCGGACGAGTAGACGACGGGCACCGGGCACCGGCCACTGACGAC
JMSF012D17+ AAG----TGCCGCTTTCCGGACGAGTAGACGACGGGCACCGGGCACCGGCCACTGACGAC
JMFF010D10+ AAGCTACTGCCGCTTTCCGGACGAGTAGACGACGGGCACCGGGCACCGGCCACTGACGAC
JMFF047B22+ AAGCTACTGCCGCTTTCCGGACGAGTAGACGACGGGCACCGGGCACCGGCCACTGACGAC
____________________________________________________________
consensus AAGCTACTGCCGCTTTCCGGACGAGTAGACGACGGGCACCGGGCACCGGCCACTGACGAC
. : . : . : . : . : . :
rJMFF010D10- GAATCGCTGTCTGCTGAGTGCTGACAACGGGGGCAACGGGCAGCAGTCGCTGCTGA
JMSF012D17+ GAATCGCTGTCTGCTGAGTGCTGACAAC-GGGGCAACGGGCAGCAGTCGCTGCTGAGGCG
JMFF010D10+ GAATCGCTGTCTGCTGAGTGCTGACAAC-GGGGCAACGGGCAGCAGTCGCTGCTGAGGCG
JMFF047B22+ GAATCGCTGTCTGCTGAGTGCTGACAAC-GGGGCAACGGGCAGCAGTCGCTGCTGAGGCG
____________________________________________________________
consensus GAATCGCTGTCTGCTGAGTGCTGACAAC-GGGGCAACGGGCAGCAGTCGCTGCTGAGGCG
. : . : . : . : . : . :
JMSF012D17+ CAAGGCTGCGGGAGTGTTGGCGTTGCCGGCTTGCTGAACGAGTAAAGGAGTCAACGAGAA
JMFF010D10+ CAAGGCTGCGGGAGTGTTGGCGTTGCCGGCTTGCTGAACGAGTAAAGGAGTCAACGAGAA
JMFF047B22+ CAAGGCTGCGGGAGTGTTGGCGTTGCCGGCTTGCTGAACGAGTAAAGGAGTCAACGAGAA
____________________________________________________________
consensus CAAGGCTGCGGGAGTGTTGGCGTTGCCGGCTTGCTGAACGAGTAAAGGAGTCAACGAGAA
. : . : . : . : . : . :
JMSF012D17+ GTCGAGAAGGTGAAGGTATGGTGTGGAGGGGCAGAAGGCGGAGCGTAGAAGTGC
JMFF010D10+ GTCGAGAAGGTGAAGGTATGGTGTGGAGGGGCAGAAGGCGGAGCGTAGAAGTGC
JMFF047B22+ GTCGAGAAGGTGAAGGTATGGTGTGGAGGGGCAGAAGGCGGAGCGTAGAAGTGCACACCC
____________________________________________________________
consensus GTCGAGAAGGTGAAGGTATGGTGTGGAGGGGCAGAAGGCGGAGCGTAGAAGTGCACACCC