Contig 012980:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046H02Sequence553012980 (3)ref|XP_009605686.1|1e-99PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Nicotiana tome458013828 (3)gb|EPS73521.1|1e-42hypothetical protein M569_01229, partial [Genlisea aurea]
JMFN025M19Sequence604012980 (3)ref|XP_006351506.1|3e-124PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Solanum tubero
JMFS092B04Sequence617012980 (3)ref|XP_009605686.1|8e-124PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Nicotiana tome

Alignment

This contig is upended


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JMFN025M19+                                               AGCAGTTGGCCTGGTGTTTGACGT
                      ____________________________________________________________
consensus                                                 AGCAGTTGGCCTGGTGTTTGACGT
 
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JMFN025M19+           GAAGGAAATGCATGTGGATTTATAACTACGTCCGGAACTATCCCTTGTATTGTAAAAGGA
                      ____________________________________________________________
consensus             GAAGGAAATGCATGTGGATTTATAACTACGTCCGGAACTATCCCTTGTATTGTAAAAGGA
 
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JMFN025M19+           AAGTTCTCCTGAGATTCTAGAAAACCGAGCACACCCTTTTGCCCATGCATACTAGAAAAT
                      ____________________________________________________________
consensus             AAGTTCTCCTGAGATTCTAGAAAACCGAGCACACCCTTTTGCCCATGCATACTAGAAAAT
 
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JMFN025M19+           TTGTCTCCAAGACAAGGAGAACGAACCTGTCTCAGAGACACAACAGCAAAGCTTTTTCCC
                      ____________________________________________________________
consensus             TTGTCTCCAAGACAAGGAGAACGAACCTGTCTCAGAGACACAACAGCAAAGCTTTTTCCC
 
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JMFN025M19+           TCATCATTACCAGAGAGTACAACCTTCTGAACCATGCCTCTTTCTGTATGCTTCAGTTTA
                      ____________________________________________________________
consensus             TCATCATTACCAGAGAGTACAACCTTCTGAACCATGCCTCTTTCTGTATGCTTCAGTTTA
 
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JMFN025M19+           ACACTGTGATCAGCCCCTGATTCCGCATACTTTCCAATGACAATATCACCAGTTTGAAGG
JMFS092B04+               TGTGATCAGCCCCTGATTCCGCATACTTTCCAATGACAATATCACCAGTTTGAAGG
                      ____________________________________________________________
consensus             ACACTGTGATCAGCCCCTGATTCCGCATACTTTCCAATGACAATATCACCAGTTTGAAGG
 
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JMFN025M19+           TTTGCACCAATGAATGGAAAGCCATCATCATCAAGGCTGTCAACGCGTCCTATCTTACTT
JMFS092B04+           TTTGCACCAATGAATGGAAAGCCATCATCATCAAGGCTGTCAACGCGTCCTATCTTACTT
                      ____________________________________________________________
consensus             TTTGCACCAATGAATGGAAAGCCATCATCATCAAGGCTGTCAACGCGTCCTATCTTACTT
 
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JMFN025M19+           TGTGTTTTTCCAAAAATTACGGCATCCTCCAGTTTCATCTTCTTTCCCAGGGATTCCTTA
JMFS092B04+           TGTGTTTTTCCAAAAATTACGGCATCCTCCAGTTTCATCTTCTTTCCCAGGGATTCCTTA
                      ____________________________________________________________
consensus             TGTGTTTTTCCAAAAATTACGGCATCCTCCAGTTTCATCTTCTTTCCCAGGGATTCCTTA
 
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JMFN025M19+           TTATCAACCTCAGCCTTGTAACTTCTAATATGCTCTGACCGAAACATACCACGCTCCAAA
JMFS092B04+           TTATCAACCTCAGCCTTGTAACTTCTAATATGCTCTGACCGAAACATACCACGCTCCAAA
                      ____________________________________________________________
consensus             TTATCAACCTCAGCCTTGTAACTTCTAATATGCTCTGACCGAAACATACCACGCTCCAAA
 
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JMFN025M19+           GAAGCACGGTTCATTACTAAAGAATCCTCTTGGTTGTACCCTAGGTGAACGTTAACTGCC
JMFS092B04+           GAAGCACGGTTCATTACTAAAGAATCCTCTTGGTTGTACCCTAGGTGAACGTTAACTGCC
JMFF046H02+                                                          AACGTTAACTGCC
                      ____________________________________________________________
consensus             GAAGCACGGTTCATTACTAAAGAATCCTCTTGGTTGTACCCTAGGTGAACGTTAACTGCC
 
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JMFN025M19+           ACAATTGCACACTGGCCATTGTAGTATTCAGGGTGTGGCA                    
JMFS092B04+           ACAATTGCACACTGGCCATTGTAGTATTCAGGGTGTGGCAGCATCGATCTATGATAATTA
JMFF046H02+           ACAATTGCACACTGGCCATNGTAGTATTCAGGGTGTGGCAGCATCGATCTATGATAATTA
                      ____________________________________________________________
consensus             ACAATTGCACACTGGCCATTGTAGTATTCAGGGTGTGGCAGCATCGATCTATGATAATTA
 
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JMFS092B04+           GGGTCTTTGGGCTTTCCAAGGCAATCTGACAGCATGGTACGAAAAAGAGGCCTCTGAGGA
JMFF046H02+           GGGTCTTTGGGCTTTCCAAGGCAATCTGACAGCATGGTACGAAAAAGAGGCCTCTGAGGA
                      ____________________________________________________________
consensus             GGGTCTTTGGGCTTTCCAAGGCAATCTGACAGCATGGTACGAAAAAGAGGCCTCTGAGGA
 
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JMFS092B04+           TAATACAGTTGATGAGTATTAGTATCTATTCTAACATTCGGGTTCAAAGTAGGGAATCCA
JMFF046H02+           TAATACAGTTGATGAGTATTAGTATCTATTCTAACATTCGGGTTCAAAGTAGGGAATCCA
                      ____________________________________________________________
consensus             TAATACAGTTGATGAGTATTAGTATCTATTCTAACATTCGGGTTCAAAGTAGGGAATCCA
 
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JMFS092B04+           ATGGCTTGTTGACTATGCTTCTCAGACTGGTAAAGGACCCTCCTCGCATGATCATGGTTG
JMFF046H02+           ATGGCTTGTTGACTATGCTTCTCAGACTGGTAAAGGACCCTCCTCGCATGATCATGGTTG
                      ____________________________________________________________
consensus             ATGGCTTGTTGACTATGCTTCTCAGACTGGTAAAGGACCCTCCTCGCATGATCATGGTTG
 
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JMFS092B04+           GCAAAAGGGATAATCCCACAGCTCAAACCCAGTAGAAATGACAAGTCAAGTTCACAGTGT
JMFF046H02+           GCAAAAGGGATAATCCCACAGCTCAAACCCAGTAGAAATGACAAGTCAAGTTCACAGTGT
                      ____________________________________________________________
consensus             GCAAAAGGGATAATCCCACAGCTCAAACCCAGTAGAAATGACAAGTCAAGTTCACAGTGT
 
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JMFS092B04+           GTATACTTTGCAGGTGGATCC                                       
JMFF046H02+           GTATACTTTGCAGGTGGATCCTCCTTGCAGGCTTCAAGGAGGTAGTTCACTCCCCAAGCA
                      ____________________________________________________________
consensus             GTATACTTTGCAGGTGGATCCTCCTTGCAGGCTTCAAGGAGGTAGTTCACTCCCCAAGCA
 
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JMFF046H02+           GTTCGACAATCTTCTTCTTCTTCAGAACCAATAAATTCAACTATTCCATTATCCAGAAAA
                      ____________________________________________________________
consensus             GTTCGACAATCTTCTTCTTCTTCAGAACCAATAAATTCAACTATTCCATTATCCAGAAAA
 
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JMFF046H02+           GATTGAAAGGAGTCTCCATCTTTCAGAAATTGAATTTTCTTTAAATTTTCAACAACAAGA
                      ____________________________________________________________
consensus             GATTGAAAGGAGTCTCCATCTTTCAGAAATTGAATTTTCTTTAAATTTTCAACAACAAGA
 
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JMFF046H02+           AGAGGGCGCAGGATTCGTCCAGCATCAGAAAAAATTCGGACTTCGTGGTGTTGTTCATCT
                      ____________________________________________________________
consensus             AGAGGGCGCAGGATTCGTCCAGCATCAGAAAAAATTCGGACTTCGTGGTGTTGTTCATCT