Contig 012969:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044I13Sequence625012969 (2)ref|XP_004238942.1|297PREDICTED: homologous-pairing protein 2 homolog [Solanum lycopersicum]606012969 (2)emb|CDP00600.1|4e-51unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF044I13-                                                GCTTGACAACCTCACAGTATCT
                      ____________________________________________________________
consensus                                                   GCTTGACAACCTCACAGTATCT
 
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rJMFF044I13-          TTTAGCCATAAACAATCCCACATTATCTATCACTCTATCAGACAACAATATGCCCCATAG
                      ____________________________________________________________
consensus             TTTAGCCATAAACAATCCCACATTATCTATCACTCTATCAGACAACAATATGCCCCATAG
 
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rJMFF044I13-          AATTCTAAAAAACTGCAAGCTACAATTATAATTAATGCTTGTTTGACCTAGCTGGAGGAT
                      ____________________________________________________________
consensus             AATTCTAAAAAACTGCAAGCTACAATTATAATTAATGCTTGTTTGACCTAGCTGGAGGAT
 
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rJMFF044I13-          ATTCAAAATAGTTCTTAATTAGCAAAGAACTTTTGCCTCTTTGTTTTAGCTTTCAAAGTC
                      ____________________________________________________________
consensus             ATTCAAAATAGTTCTTAATTAGCAAAGAACTTTTGCCTCTTTGTTTTAGCTTTCAAAGTC
 
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rJMFF044I13-          TTTTCTGTTTTTATTATCTGGAACTGCTGCTTTTGGAATATATAAGCTCCAATAACCTCT
                      ____________________________________________________________
consensus             TTTTCTGTTTTTATTATCTGGAACTGCTGCTTTTGGAATATATAAGCTCCAATAACCTCT
 
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rJMFF044I13-          GGGCGAAAAAAGCACTTACTGGCCCCTAGAACGCTTCTTTCCTTGTTGCATTAGATCAGC
                      ____________________________________________________________
consensus             GGGCGAAAAAAGCACTTACTGGCCCCTAGAACGCTTCTTTCCTTGTTGCATTAGATCAGC
 
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rJMFF044I13-          AAAAGACTGCAAACTGACACCAACATCTTCATCATACTCGATTCCAAGTTCCTCCTTAAA
                      ____________________________________________________________
consensus             AAAAGACTGCAAACTGACACCAACATCTTCATCATACTCGATTCCAAGTTCCTCCTTAAA
 
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rJMFF044I13-          TTCCTTGATATCCTTGGGTGAGTTCTCAGTAATAGCATCCCAGACATCTTTGAACATTCT
JMFF044I13+                                              CATCCCAGACATCTTTGAACATTCT
                      ____________________________________________________________
consensus             TTCCTTGATATCCTTGGGTGAGTTCTCAGTAATAGCATCCCAGACATCTTTGAACATTCT
 
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rJMFF044I13-          CTTACGCCTTCTCCACTGATTTAGTGTTTCAGTATACAATTCCTCCACAGCTTTTCTCTC
JMFF044I13+           CTTACGCCTTCTCCACTGATNTAGTGTTTCAGTATACAATTCCTCCACAGCTTTTCTCTC
                      ____________________________________________________________
consensus             CTTACGCCTTCTCCACTGATTTAGTGTTTCAGTATACAATTCCTCCACAGCTTTTCTCTC
 
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rJMFF044I13-          TTCTGGGCTCACTAGGGTGACTCCTTCCCTCAATTTAGTCAATTTCTTTTCCATCTCCTC
JMFF044I13+           TTCTGGGCTCACTAGGGTGACTCCTTCCCTCAATTTAGTCAATTTCTTTTCCATCTCCTC
                      ____________________________________________________________
consensus             TTCTGGGCTCACTAGGGTGACTCCTTCCCTCAATTTAGTCAATTTCTTTTCCATCTCCTC
 
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rJMFF044I13-          AGCCTCGTTTCTTTGGTTGGTTTCCCTAGCACGTATCTCTTCCA                
JMFF044I13+           AGCCTCGTTTCTTTGGTTGGTTTCCCTAGCACGTATCTCTTCCAGTGTCAAATTTGATTG
                      ____________________________________________________________
consensus             AGCCTCGTTTCTTTGGTTGGTTTCCCTAGCACGTATCTCTTCCAGTGTCAAATTTGATTG
 
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JMFF044I13+           CAAAGCTTTAATTTCTCCCTCAACCTCACTGATTTCTCTCCTTTGTTCACCCAGCATCTC
                      ____________________________________________________________
consensus             CAAAGCTTTAATTTCTCCCTCAACCTCACTGATTTCTCTCCTTTGTTCACCCAGCATCTC
 
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JMFF044I13+           TTGCAGCTTGGCATTTTCTTCCTTCATTCGATTAAGCTCTTCAGTGTCTGGAATATCAAA
                      ____________________________________________________________
consensus             TTGCAGCTTGGCATTTTCTTCCTTCATTCGATTAAGCTCTTCAGTGTCTGGAATATCAAA
 
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JMFF044I13+           CTGATCTTGCCGAGCAATATATATCTTTTGTTTGCCATACTCCTTGAATGATATTTTTCC
                      ____________________________________________________________
consensus             CTGATCTTGCCGAGCAATATATATCTTTTGTTTGCCATACTCCTTGAATGATATTTTTCC
 
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JMFF044I13+           ACTGTCAGCAAGACTGTCCAGTGCCTTCTGTACTGCAGTTTTCTTAAGGTTAAACTTTTG
                      ____________________________________________________________
consensus             ACTGTCAGCAAGACTGTCCAGTGCCTTCTGTACTGCAGTTTTCTTAAGGTTAAACTTTTG
 
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JMFF044I13+           CAGACAGTCGGCCACACTTTGAGCATTCAAAGGTCTGTTTTGCTCGTTCACGAAGTTGAG
                      ____________________________________________________________
consensus             CAGACAGTCGGCCACACTTTGAGCATTCAAAGGTCTGTTTTGCTCGTTCACGAAGTTGAG
 
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JMFF044I13+           CACAATTCCTTCACTGCTATCTGATTTAGGAGGCATCGATCAGAAGGTTAAGTGGAATCA
                      ____________________________________________________________
consensus             CACAATTCCTTCACTGCTATCTGATTTAGGAGGCATCGATCAGAAGGTTAAGTGGAATCA
 
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JMFF044I13+           CACTGTGAAGAAGAAGAAGAAGACCGCGGGAAAATTATCTGCAAATTCCCTTGTATACTT
                      ____________________________________________________________
consensus             CACTGTGAAGAAGAAGAAGAAGACCGCGGGAAAATTATCTGCAAATTCCCTTGTATACTT