Contig 012957:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031A20Sequence582012957 (7)dbj|BAF64713.1|9e-10070 kDa subunit of replication protein A [Ipomoea nil]736002682 (7)dbj|BAF64713.1|3e-15470 kDa subunit of replication protein A [Ipomoea nil]
JMFF033K02Sequence580012957 (7)dbj|BAF64713.1|7e-9970 kDa subunit of replication protein A [Ipomoea nil]783002682 (7)dbj|BAF64713.1|7e-17170 kDa subunit of replication protein A [Ipomoea nil]
JMFF043I21Sequence644012957 (7)dbj|BAF64713.1|5e-10770 kDa subunit of replication protein A [Ipomoea nil]533002682 (7)dbj|BAF64713.1|2e-8170 kDa subunit of replication protein A [Ipomoea nil]
JMFF043J01Sequence632012957 (7)dbj|BAF64713.1|2e-11170 kDa subunit of replication protein A [Ipomoea nil]603002682 (7)dbj|BAF64713.1|3e-12570 kDa subunit of replication protein A [Ipomoea nil]
JMFF044A15Sequence629012957 (7)dbj|BAF64713.1|1e-10470 kDa subunit of replication protein A [Ipomoea nil]533002682 (7)dbj|BAF64713.1|2e-8170 kDa subunit of replication protein A [Ipomoea nil]
JMSF020A13Sequence676012957 (7)dbj|BAF64713.1|4e-12470 kDa subunit of replication protein A [Ipomoea nil]761002682 (7)dbj|BAF64713.1|5e-16170 kDa subunit of replication protein A [Ipomoea nil]
JMSF041F22Sequence788012957 (7)dbj|BAF64713.1|1e-15470 kDa subunit of replication protein A [Ipomoea nil]662002682 (7)dbj|BAF64713.1|2e-13470 kDa subunit of replication protein A [Ipomoea nil]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF041F22+ TCAAAGTTCC
                      ____________________________________________________________
consensus TCAAAGTTCC
 
. : . : . : . : . : . :
JMSF041F22+ CTTTGAAATGTAATAAACCTTCCCCAATTCAAACTTGTCATAAAACTTCCTCGCAGCCTG
                      ____________________________________________________________
consensus CTTTGAAATGTAATAAACCTTCCCCAATTCAAACTTGTCATAAAACTTCCTCGCAGCCTG
 
. : . : . : . : . : . :
JMSF020A13+ TAATTCAACATGGAAGAC
JMSF041F22+ GTTGAACATTGTGGCCTGTATTTCTGTGCCATCCTGATCTGCTAATTCAACATTGAAGAC
                      ____________________________________________________________
consensus GTTGAACATTGTGGCCTGTATTTCTGTGCCATCCTGATCTGCTAATTCAACATTGAAGAC
 
. : . : . : . : . : . :
JMSF020A13+ ACAGCCTTCTCCCCTAGCATTCTTGTAAAACCGCATGTTTCCTTTGCTAGTTACACGAAC
JMFF043J01+ TAAAACCGCATGTTTCCTNTGCTAGTTACACGAAC
JMSF041F22+ ACAGCCTTCTCCCCTAGCATTCTTGTAAAACCGCATGTTTCCTTTGCTAGTTACACGAAC
JMFF044A15+ AAACCGCATGTTTCCTNTGCTAGTTACACGAAC
JMFF043I21+ AGCATTCTTGTAAAACCGCATGTNTCCTNTGCTAGTTACACGAAC
                      ____________________________________________________________
consensus ACAGCCTTCTCCCCTAGCATTCTTGTAAAACCGCATGTTTCCTTTGCTAGTTACACGAAC
 
. : . : . : . : . : . :
JMSF020A13+ CTTTATGGTCCAGATTCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
JMFF043J01+ CTTTATGGTCCAGATTCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
JMFF031A20+ TCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
JMFF033K02+ CTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
JMSF041F22+ CTTTATGGTCCAGATTCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
JMFF044A15+ CTTTATGGTCCAGATTCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
JMFF043I21+ CTTTATGGTCCAGATTCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
                      ____________________________________________________________
consensus CTTTATGGTCCAGATTCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
 
. : . : . : . : . : . :
JMSF020A13+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
JMFF043J01+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
JMFF031A20+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
JMFF033K02+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
JMSF041F22+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
JMFF044A15+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
JMFF043I21+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
                      ____________________________________________________________
consensus CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
 
. : . : . : . : . : . :
JMSF020A13+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
JMFF043J01+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
JMFF031A20+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
JMFF033K02+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
JMSF041F22+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
JMFF044A15+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
JMFF043I21+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
                      ____________________________________________________________
consensus TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
 
. : . : . : . : . : . :
JMSF020A13+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
JMFF043J01+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
JMFF031A20+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
JMFF033K02+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
JMSF041F22+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
JMFF044A15+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
JMFF043I21+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
                      ____________________________________________________________
consensus ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
 
. : . : . : . : . : . :
JMSF020A13+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
JMFF043J01+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
JMFF031A20+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
JMFF033K02+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
JMSF041F22+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
JMFF044A15+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
JMFF043I21+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
                      ____________________________________________________________
consensus GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
 
. : . : . : . : . : . :
JMSF020A13+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
JMFF043J01+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
JMFF031A20+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
JMFF033K02+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
JMSF041F22+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
JMFF044A15+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
JMFF043I21+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
                      ____________________________________________________________
consensus CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
 
. : . : . : . : . : . :
JMSF020A13+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
JMFF043J01+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
JMFF031A20+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
JMFF033K02+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
JMSF041F22+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
JMFF044A15+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
JMFF043I21+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
                      ____________________________________________________________
consensus AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
 
. : . : . : . : . : . :
JMSF020A13+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
JMFF043J01+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
JMFF031A20+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
JMFF033K02+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
JMSF041F22+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
JMFF044A15+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
JMFF043I21+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
                      ____________________________________________________________
consensus TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
 
. : . : . : . : . : . :
JMSF020A13+ TATGGCCGATATCGCATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
JMFF043J01+ TATGGCCGATATCGCATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
JMFF031A20+ TATGGCCGATATCGCATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
JMFF033K02+ TATGGCCGATATCGCATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
JMSF041F22+ TATGGCCGATATCGCATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
JMFF044A15+ TATGGCCGATATCG-ATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
JMFF043I21+ TATGGCCGATATCG-ATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
                      ____________________________________________________________
consensus TATGGCCGATATCGCATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
 
. : . : . : . : . : . :
JMSF020A13+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACC
JMFF043J01+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACC
JMFF031A20+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACC
JMFF033K02+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACC
JMSF041F22+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACC
JMFF044A15+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACC
JMFF043I21+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACCCGG
                      ____________________________________________________________
consensus CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACCCGG