| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF031A20 | Sequence | 582 | 012957 (7) | dbj|BAF64713.1| | 9e-100 | 70 kDa subunit of replication protein A [Ipomoea nil] | 736 | 002682 (7) | dbj|BAF64713.1| | 3e-154 | 70 kDa subunit of replication protein A [Ipomoea nil] |
| JMFF033K02 | Sequence | 580 | 012957 (7) | dbj|BAF64713.1| | 7e-99 | 70 kDa subunit of replication protein A [Ipomoea nil] | 783 | 002682 (7) | dbj|BAF64713.1| | 7e-171 | 70 kDa subunit of replication protein A [Ipomoea nil] |
| JMFF043I21 | Sequence | 644 | 012957 (7) | dbj|BAF64713.1| | 5e-107 | 70 kDa subunit of replication protein A [Ipomoea nil] | 533 | 002682 (7) | dbj|BAF64713.1| | 2e-81 | 70 kDa subunit of replication protein A [Ipomoea nil] |
| JMFF043J01 | Sequence | 632 | 012957 (7) | dbj|BAF64713.1| | 2e-111 | 70 kDa subunit of replication protein A [Ipomoea nil] | 603 | 002682 (7) | dbj|BAF64713.1| | 3e-125 | 70 kDa subunit of replication protein A [Ipomoea nil] |
| JMFF044A15 | Sequence | 629 | 012957 (7) | dbj|BAF64713.1| | 1e-104 | 70 kDa subunit of replication protein A [Ipomoea nil] | 533 | 002682 (7) | dbj|BAF64713.1| | 2e-81 | 70 kDa subunit of replication protein A [Ipomoea nil] |
| JMSF020A13 | Sequence | 676 | 012957 (7) | dbj|BAF64713.1| | 4e-124 | 70 kDa subunit of replication protein A [Ipomoea nil] | 761 | 002682 (7) | dbj|BAF64713.1| | 5e-161 | 70 kDa subunit of replication protein A [Ipomoea nil] |
| JMSF041F22 | Sequence | 788 | 012957 (7) | dbj|BAF64713.1| | 1e-154 | 70 kDa subunit of replication protein A [Ipomoea nil] | 662 | 002682 (7) | dbj|BAF64713.1| | 2e-134 | 70 kDa subunit of replication protein A [Ipomoea nil] |
This contig is upended
. : . : . : . : . : . :
JMSF041F22+ TCAAAGTTCC
____________________________________________________________
consensus TCAAAGTTCC
. : . : . : . : . : . :
JMSF041F22+ CTTTGAAATGTAATAAACCTTCCCCAATTCAAACTTGTCATAAAACTTCCTCGCAGCCTG
____________________________________________________________
consensus CTTTGAAATGTAATAAACCTTCCCCAATTCAAACTTGTCATAAAACTTCCTCGCAGCCTG
. : . : . : . : . : . :
JMSF020A13+ TAATTCAACATGGAAGAC
JMSF041F22+ GTTGAACATTGTGGCCTGTATTTCTGTGCCATCCTGATCTGCTAATTCAACATTGAAGAC
____________________________________________________________
consensus GTTGAACATTGTGGCCTGTATTTCTGTGCCATCCTGATCTGCTAATTCAACATTGAAGAC
. : . : . : . : . : . :
JMSF020A13+ ACAGCCTTCTCCCCTAGCATTCTTGTAAAACCGCATGTTTCCTTTGCTAGTTACACGAAC
JMFF043J01+ TAAAACCGCATGTTTCCTNTGCTAGTTACACGAAC
JMSF041F22+ ACAGCCTTCTCCCCTAGCATTCTTGTAAAACCGCATGTTTCCTTTGCTAGTTACACGAAC
JMFF044A15+ AAACCGCATGTTTCCTNTGCTAGTTACACGAAC
JMFF043I21+ AGCATTCTTGTAAAACCGCATGTNTCCTNTGCTAGTTACACGAAC
____________________________________________________________
consensus ACAGCCTTCTCCCCTAGCATTCTTGTAAAACCGCATGTTTCCTTTGCTAGTTACACGAAC
. : . : . : . : . : . :
JMSF020A13+ CTTTATGGTCCAGATTCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
JMFF043J01+ CTTTATGGTCCAGATTCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
JMFF031A20+ TCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
JMFF033K02+ CTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
JMSF041F22+ CTTTATGGTCCAGATTCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
JMFF044A15+ CTTTATGGTCCAGATTCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
JMFF043I21+ CTTTATGGTCCAGATTCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
____________________________________________________________
consensus CTTTATGGTCCAGATTCCTTGATAAGGATTCAAGGAAACAAGTGGATGAATTCTCCGGGT
. : . : . : . : . : . :
JMSF020A13+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
JMFF043J01+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
JMFF031A20+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
JMFF033K02+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
JMSF041F22+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
JMFF044A15+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
JMFF043I21+ CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
____________________________________________________________
consensus CATTGCCAGTCTGGCAGGTGGCACAATGTTTCCATTCTGTTCATGTACAATTTGAGCAGC
. : . : . : . : . : . :
JMSF020A13+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
JMFF043J01+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
JMFF031A20+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
JMFF033K02+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
JMSF041F22+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
JMFF044A15+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
JMFF043I21+ TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
____________________________________________________________
consensus TGATTTGGCTACAAATTCTTGCTTTGGCCTCAATACTATCCCATTCTCTTCAGTTTTCAC
. : . : . : . : . : . :
JMSF020A13+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
JMFF043J01+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
JMFF031A20+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
JMFF033K02+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
JMSF041F22+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
JMFF044A15+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
JMFF043I21+ ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
____________________________________________________________
consensus ACCTGTCTTGTACTCTGCCTCAAGCGGAGAAGATACAGCATCACATTTTGTCACAATCAG
. : . : . : . : . : . :
JMSF020A13+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
JMFF043J01+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
JMFF031A20+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
JMFF033K02+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
JMSF041F22+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
JMFF044A15+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
JMFF043I21+ GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
____________________________________________________________
consensus GTACTTTTCATTCTTCATTGGGATGTCATTAAGAGTATAATCAAGAATCCGAACTAGACC
. : . : . : . : . : . :
JMSF020A13+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
JMFF043J01+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
JMFF031A20+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
JMFF033K02+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
JMSF041F22+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
JMFF044A15+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
JMFF043I21+ CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
____________________________________________________________
consensus CAGATTCTGAATAGAACCAGAGATGACTTCAGATGATAAGCTGGATTGTAGAATTGCCTT
. : . : . : . : . : . :
JMSF020A13+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
JMFF043J01+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
JMFF031A20+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
JMFF033K02+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
JMSF041F22+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
JMFF044A15+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
JMFF043I21+ AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
____________________________________________________________
consensus AAGCTTCATCTTCCCATCATTAGCTGTGAACATGTATCGGTTCCCAGCTTGTTTGAGATC
. : . : . : . : . : . :
JMSF020A13+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
JMFF043J01+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
JMFF031A20+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
JMFF033K02+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
JMSF041F22+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
JMFF044A15+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
JMFF043I21+ TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
____________________________________________________________
consensus TACTACTTGAACAATTAACTCCGGGAGGTCCGACCCAGAATCCGGCGACGGGTTTGCTAG
. : . : . : . : . : . :
JMSF020A13+ TATGGCCGATATCGCATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
JMFF043J01+ TATGGCCGATATCGCATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
JMFF031A20+ TATGGCCGATATCGCATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
JMFF033K02+ TATGGCCGATATCGCATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
JMSF041F22+ TATGGCCGATATCGCATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
JMFF044A15+ TATGGCCGATATCG-ATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
JMFF043I21+ TATGGCCGATATCG-ATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
____________________________________________________________
consensus TATGGCCGATATCGCATCTGGAGTCACCGATCTTTCCATCTCTTCTTGATTTTTTTAGAA
. : . : . : . : . : . :
JMSF020A13+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACC
JMFF043J01+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACC
JMFF031A20+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACC
JMFF033K02+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACC
JMSF041F22+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACC
JMFF044A15+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACC
JMFF043I21+ CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACCCGG
____________________________________________________________
consensus CCCTCAATGCCGAAAACTCGAGCAATGTCAAGTGTGAAGACTCTGAGGGGAAGAACCCGG