Contig 012949:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041J09Sequence659012949 (3)ref|XP_006484861.1|1e-98PREDICTED: chaperone protein ClpB1-like [Citrus sinensis]
JMFS055G11Sequence572012949 (3)emb|CDP16532.1|4e-65unnamed protein product [Coffea canephora]
JMFS134H11Sequence422012949 (3)ref|XP_009597265.1|4e-20PREDICTED: chaperone protein ClpB1 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF041J09+                                                                      A
                      ____________________________________________________________
consensus                                                                        A
 
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JMFF041J09+           CAGGATCAAGCTTTCCCGCCTGCTCCACAAGATCACGGCCATAAGTCTTAAGTGCTTGGA
                      ____________________________________________________________
consensus             CAGGATCAAGCTTTCCCGCCTGCTCCACAAGATCACGGCCATAAGTCTTAAGTGCTTGGA
 
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JMFF041J09+           ATGTAGTATCCCCTGAAGCACTCTCAACCTTTCTCCCCTCCTTTCCTCGAAGCTTCTCAA
                      ____________________________________________________________
consensus             ATGTAGTATCCCCTGAAGCACTCTCAACCTTTCTCCCCTCCTTTCCTCGAAGCTTCTCAA
 
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JMFF041J09+           CCTCAGATTTCACTCTAGTTGCACTAACCCCAGCTTCTTTCAAAAGGTCCCCAATTTGGG
                      ____________________________________________________________
consensus             CCTCAGATTTCACTCTAGTTGCACTAACCCCAGCTTCTTTCAAAAGGTCCCCAATTTGGG
 
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JMFF041J09+           AATCCTCCAACAGTCCCAAAATCAACTGATCAACAGCCAAATGCGTGTCCTTCCGGGACT
                      ____________________________________________________________
consensus             AATCCTCCAACAGTCCCAAAATCAACTGATCAACAGCCAAATGCGTGTCCTTCCGGGACT
 
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JMFS055G11+             TGCAATCCCTGCGCCCGCCGGACTGCTTTGATCAGTGAAGTACCAGCCGGGACTTAGT
JMFS134H11+             TGCAATCCCTGCGCCCGCCGGATTGCATTGATCAGTCAAGTACCAGCCGGGAATTCGT
JMFF041J09+           TCTGCAATCCCTGCGCCCGCCGGATTGCCTTGATCAGTGAAGTACCAGCCGGGACTTCGT
                      ____________________________________________________________
consensus             TCTGCAATCCCTGCGCCCGCCGGATTGCTTTGATCAGTGAAGTACCAGCCGGGACTTCGT
 
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JMFS055G11+           CAGAA-GGCGGAGTCTGACAGGGCAAGTTCTTCAACGCATGA-TTGAATACCCTCTCAAC
JMFS134H11+           CAGGATGGCGGAGTTTGAGAGGGCAACTTCTTCAACGCTTGATTTGAATACCCTCTCATC
JMFF041J09+           CAGGA-GGCGGAGTCTGAGAGGGCAACTTCTTCAACGCCTGA-TTGAATACCCTCTCAAC
                      ____________________________________________________________
consensus             CAGGA-GGCGGAGTCTGAGAGGGCAACTTCTTCAACGCTTGA-TTGAATACCCTCTCAAC
 
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JMFS055G11+           CGATTTCGCCCCTTCCTCACCACCGTTGGCATTGACAATCGCCTGCCAAAAAACCCCATT
JMFS134H11+           CGATTTCGCCCCTTCCTCACCACCTTTGGCATTCACAATCGCTAGCCAAACAACACCATT
JMFF041J09+           CGATTTCGCCCCTTCCTCACCACCACTGGCATTCACAATCGCTTGCCAAAAAACACCATT
                      ____________________________________________________________
consensus             CGATTTCGCCCCTTCCTCACCACCTTTGGCATTCACAATCGCTTGCCAAAAAACACCATT
 
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JMFS055G11+           ATGGTGGGAAAGCAAGAACGCAGCCACATGCAAGGGTATAATTTGAGCATGCCGTGCGTT
JMFS134H11+           ATGGTCGCAAAGCAAGAACCCATCCACATGCAAGGGTATACTTTGAGCATG         
JMFF041J09+           ATGGTCGGAAAGCAAGAACACAGCCACATGCAAGGGTATAATTTGAGCATGCCCTGCGTT
                      ____________________________________________________________
consensus             ATGGTCGGAAAGCAAGAACGCAGCCACATGCAAGGGTATAATTTGAGCATGCCGTGCGTT
 
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JMFS055G11+           CATGGCCAGCTCATGAGCCCCCACAAGGGCTTCATTAGTCTTGTGAGTGAATTTCTCCGG
JMFF041J09+           CATGGCCAGCTCATGAGCCCCGACAAGGGCTTCATTAGTCTTGTGAGTGAATTTCTCCGG
                      ____________________________________________________________
consensus             CATGGCCAGCTCATGAGCCCCGACAAGGGCTTCATTAGTCTTGTGAGTGAATTTCTCCGG
 
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JMFS055G11+           ATTCCTCACAGTAGATTTAATAAAATATCACTGTGATCAACGAGAAAGTATAGATGGCTT
JMFF041J09+           ATTCATCACACTAGATTTAATAAAATATCACTGTGAACAACGAAAAAGTATAGATGGCTT
                      ____________________________________________________________
consensus             ATTCCTCACAGTAGATTTAATAAAATATCACTGTGATCAACGAGAAAGTATAGATGGCTT
 
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JMFS055G11+           TTGGTGTAAGTGTATGATGTATTTTGTGCAGAG                           
JMFF041J09+           TTGGTGTAAGTGTTTGATGTATTTTGTGCAGAGAATCTGGAAGTGTATGCGCTTTGAGGT
                      ____________________________________________________________
consensus             TTGGTGTAAGTGTTTGATGTATTTTGTGCAGAGAATCTGGAAGTGTATGCGCTTTGAGGT