| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015F24 | Sequence | 164 | 012948 (7) | 588 | 012948 (7) | sp|P31853.2|ATPX_SPIOL | 2e-65 | RecName: Full=ATP synthase subunit b', chloroplastic; AltName: Full=ATP synthas | |||
| JMFF038J10 | Sequence | 488 | 012948 (7) | emb|CDP13530.1| | 6e-48 | unnamed protein product [Coffea canephora] | 692 | 012948 (7) | ref|XP_006353681.1| | 2e-72 | PREDICTED: ATP synthase subunit b', chloroplastic-like [Solanum tuberosum] |
| JMFF040D17 | Sequence | 394 | 012948 (7) | emb|CDP13530.1| | 2e-04 | unnamed protein product [Coffea canephora] | 701 | 012948 (7) | ref|XP_006353681.1| | 5e-70 | PREDICTED: ATP synthase subunit b', chloroplastic-like [Solanum tuberosum] |
| JMFN044M14 | Sequence | 473 | 012948 (7) | ref|XP_006353681.1| | 3e-38 | PREDICTED: ATP synthase subunit b', chloroplastic-like [Solanum tuberosum] | |||||
This contig is upended
. : . : . : . : . : . :
rJMFF015F24- CTTTGATAATTTAGAAATTTACGTAAA
rJMFF038J10- CTTTGATAATTTAGAAATTTACGTAAA
rJMFF040D17- AAATTTACGTAAA
____________________________________________________________
consensus CTTTGATAATTTAGAAATTTACGTAAA
. : . : . : . : . : . :
rJMFF015F24- ACTGAAAATCTCTAAATAGAATTTATACAAATTAGATTTAAAGAGTGGGATTTAGATGCA
rJMFF038J10- ACTGAAAATCTCTAAATAGAATTTATACAAATTAGATTTAAAGAGTGGGATTTAGATGCA
rJMFF040D17- ACTGAAAATCTCTAAATAGAATTTATACAAATTAGATTTAAAGAGTGGGATTTAGATGCA
____________________________________________________________
consensus ACTGAAAATCTCTAAATAGAATTTATACAAATTAGATTTAAAGAGTGGGATTTAGATGCA
. : . : . : . : . : . :
rJMFF015F24- GCAGCATATTTGTAATATATAATTTTTTTTCTTCTTTTTTCATAGATTGATAGAAAAAAA
rJMFF038J10- GCAGCATATTTGTAATATATAATTTTTTTTCTTCTTTTTTCATAGATTGATAGAAAAAAA
rJMFF040D17- GCAGCATATTTGTAATATATAATTTTTTTTCTTCTTTTTTCATAGATTGATAGAAAAAAA
____________________________________________________________
consensus GCAGCATATTTGTAATATATAATTTTTTTTCTTCTTTTTTCATAGATTGATAGAAAAAAA
. : . : . : . : . : . :
rJMFF015F24- TTCCTAATTAACAGGGAGGACCTTCTTGACAATGTCATCACTGAGAGCTGAAATCTGGGA
rJMFF038J10- TTCCTAATTAACAGGGAGGACCTTCTTGACAATGTCATCACTGAGAGCTGAAATCTGGGA
rJMFF040D17- TTCCTAATTAACAGGGAGGACCTTCTTGACAATGTCATCACTGAGAGCTGAAATCTGGGA
____________________________________________________________
consensus TTCCTAATTAACAGGGAGGACCTTCTTGACAATGTCATCACTGAGAGCTGAAATCTGGGA
. : . : . : . : . : . :
rJMFF015F24- ATCGAGAGCCTTTATGGTCTCCACCTTCTGGGTCTCCAGCTTGGCCAGCGCCTCCGTGAG
rJMFF038J10- ATCGAGAGCCTTTATGGTCTCCACCTTCTGGGTCTCCAGCTTGGCCAGCGCCTCCGTGAG
rJMFF040D17- ATCGAGAGCCTTTATGGTCTCCACCTTCTGGGTCTCCAGCTTGGCCAGCGCCTCCGTGAG
____________________________________________________________
consensus ATCGAGAGCCTTTATGGTCTCCACCTTCTGGGTCTCCAGCTTGGCCAGCGCCTCCGTGAG
. : . : . : . : . : . :
rJMFF015F24- CTCCGCCTCCACCTTCTTACGCCCCTCCGCCAGCTTCTGCTCCACCTCCTCCTGCGTCTC
rJMFF038J10- CTCCGCCTCCACCTTCTTACGCCCCTCCGCCAGCTTCTGCTCCACCTCCTCCTGCGTCTC
rJMFF040D17- CTCCGCCTCCACCTTCTTACGCCCCTCCGCCAGCTTCTGCTCCACCTCCTCCTGCGTCTC
____________________________________________________________
consensus CTCCGCCTCCACCTTCTTACGCCCCTCCGCCAGCTTCTGCTCCACCTCCTCCTGCGTCTC
. : . : . : . : . : . :
rJMFF015F24- CTTCTTCATCTTGTTGAGCGCGGCGGATATCTCCGCACGCGCCGCCTTCATCACCGCCGC
rJMFF038J10- CTTCTTCATCTTGTTGAGCGCGGCGGATATCTCCGCACGCGCCGCCTTCATCACCGCCGC
rJMFF040D17- CTTCTTCATCTTGTTGAGCGCGGCGGATATCTCCGCACGCGCCGCCTTCATCACCGCCGC
JMFN044M14+ CATCACCGCCGC
JMFF038J10+ TCACCGCCGC
____________________________________________________________
consensus CTTCTTCATCTTGTTGAGCGCGGCGGATATCTCCGCACGCGCCGCCTTCATCACCGCCGC
. : . : . : . : . : . :
rJMFF015F24- GCCCTGCTCCTCCAGCTGCTTCACCTCCGCCGACGTGTCCTTCACGCTGCTCAGCTTCTC
rJMFF038J10- GCCCTGCTCCTCCAGCTGCTTCACCTCCGCCGACGTGTCCTTCACGCTGCTCAGCTTCTC
rJMFF040D17- GCCCTGCTCCTCCAGCTGCTTCACCTCCGCCGACGTGTCCTTCACGCTGCTCAGCTTCTC
JMFN044M14+ GCCATGCTCCTCCAGATGCTTCACCTCCGCCGACGTGTCCTTCACGTTGTTCAGCTTTTC
JMFF038J10+ GCCCTGCTCCTCCAGCTGCTTCACCTCCGCCGACGTGTCCTTCACGCTGCTCAGCTTCTC
____________________________________________________________
consensus GCCCTGCTCCTCCAGCTGCTTCACCTCCGCCGACGTGTCCTTCACGCTGCTCAGCTTCTC
. : . : . : . : . : . :
rJMFF015F24- CCTGATGGCCGCGTCCCTCTCGTCCATGAACTTCCCCAGCGGGCTGAAGTAGATCTTGTC
rJMFF038J10- CCTGATGGCCGCGTCCCTCTCGTCCATGAACTTCCCCAGCGGGCTGAAGTAGATCTTGTC
rJMFF040D17- CCTGATGGCCGCGTCCCTCTCGTCCATGAACTTCCCCAGCGGGCTGAAGTAGATCTTGTC
JMFN044M14+ CATGATGGCCGCGTCCCTGTTGTCCATGAACTTCCCCAGCGGGTTGAAGTAGATCTTGTC
JMFF038J10+ CCTGATGGCCGCGTCCCTCTCGTCCATGAACTTCCCCAGCGGGCTGAAGTAGATCTTGTC
____________________________________________________________
consensus CCTGATGGCCGCGTCCCTCTCGTCCATGAACTTCCCCAGCGGGCTGAAGTAGATCTTGTC
. : . : . : . : . : . :
rJMFF015F24- CAGCGCGAACATCAGGAATAGGATCTCCGCCATGATTATCGGCAGCGTCAGGTTGAAGTC
rJMFF038J10- CAGCGCGAACATCAGGAATAGGATCTCCGCCATGATTATCGGCAGCGTCAGGTTGAAGTC
rJMFF040D17- CAGCGCGAACATCAGGAATAGGATCCCCTCCATGATTATCGGCAGCGTCAGGTTGAAGTC
JMFN044M14+ CAGCGCGAACATCAGGAATAGGATCTCCGCCATGATTATCGGCAGCGTCAGGTTGAAGTT
JMFF038J10+ CAGCGCGAACATCAGGAATAGGATCTCCGCCATGATTATCGGCAGCGTCAGGTTGAAGTC
____________________________________________________________
consensus CAGCGCGAACATCAGGAATAGGATCTCCGCCATGATTATCGGCAGCGTCAGGTTGAAGTC
. : . : . : . : . : . :
rJMFF015F24- GAACAGCGACGCCTTCTCGAT
rJMFF038J10- GAACAGCGACGCCTTCTCGATCTCCTCCGCCATGGACGGCGGCGCCGCCGCGAGGGCGGT
rJMFF040D17- GAACAGCGACGCCTTCTCGATCTCCTCCGCCATGGACGGCGGCGCCGCCGCGAGGGCGGT
JMFN044M14+ GAACAGTGACGCTTTCTCGATCTCCTCCGCCATGGACGGCGGCGCCGCCGTGAGGGCGGT
JMFF038J10+ GAACAGCGACGCCTTCTCGATCTCCTCCGCCATGGACGGCGGCGCCGCCGCGAGGGCGGT
JMFF040D17+ CTCCGCCATGGACGGCGGCGCCGCCGCGAGGGCGGT
____________________________________________________________
consensus GAACAGCGACGCCTTCTCGATCTCCTCCGCCATGGACGGCGGCGCCGCCGCGAGGGCGGT
. : . : . : . : . : . :
rJMFF038J10- GCCCAGAATCACCGATAGGGATTTCAAACTGGAGGAGGAGAGGGAGTGGAATTGGTTGCG
rJMFF040D17- GCCCAGAATCACCGATAGGGATTTCAAACTGGAGGAGGAGAGGGAGTGGAATTGGTTGCG
JMFN044M14+ GCCCAGAATCACCGATAGGGATTTCAAACTGGAGGAGGAGAGGGAGTGGAATTGGTTGCG
JMFF038J10+ GCCCAGAATCACCGATAGGGATTTCAAACTGGAGGAGGAGAGGGAGTGGAATTGGTTGCG
JMFF040D17+ GCCCAGAATCACCGATAGGGATTTCAAACTGGAGGAGGAGAGGGAGTGGAATTGGTTGCG
____________________________________________________________
consensus GCCCAGAATCACCGATAGGGATTTCAAACTGGAGGAGGAGAGGGAGTGGAATTGGTTGCG
. : . : . : . : . : . :
rJMFF038J10- TTTTG
rJMFF040D17- TTTTGGGAGTTCGGGTANGGTTAATTTC
JMFN044M14+ TTTTGGGAGTTCGGGTAGGGTTAATTTCGGAAGGGAAGCTGAAATTTTGAGCCTTGGGGC
JMFF038J10+ TTTTGGGAGTTCGGGTAGGGTTAATTTCGGAAGGGAAGCCGAAATTTTGAGCCTTGGGGC
JMFF040D17+ TTTTGGGAGTTCGGGTAGGGTTAATTTCGGAAGGGAAGCCGAAATTTTGAGCCTTGGGGC
____________________________________________________________
consensus TTTTGGGAGTTCGGGTAGGGTTAATTTCGGAAGGGAAGCCGAAATTTTGAGCCTTGGGGC
. : . : . : . : . : . :
JMFN044M14+ AGGGAGAGCGGTGGGCATTAGGGCTTTGGAGGAAGCCATGATCATGTTAGCCATTGCTGC
JMFF038J10+ AGGGAGAGCGGTGGGCATTAGGGCTTTGGAGGAAGCCATGATCATGTTAGCCATTGCTGC
JMFF040D17+ AGGGAGAGCGGTGGGCATTAGGGCTTTGGAGGAAGCCATGATCATGTTAGCCATTGCTGC
____________________________________________________________
consensus AGGGAGAGCGGTGGGCATTAGGGCTTTGGAGGAAGCCATGATCATGTTAGCCATTGCTGC
. : . : . : . : . : . :
JMFN044M14+ TCTTCTTCTTATTCTTCTTCCTATACTTTGCTGCTTGCAGA
JMFF038J10+ TCTTCTTCTTCTTCTTCTTCCTCTACTTTGCTGCTTGCAGAAGTGGAAATGAGTGAAT
JMFF015F24+ CTTCCTNTACTTTGCTGCTTGCAGAAGTGGAAANGAGNGAATAA
JMFF040D17+ TCTTCTTCTTCTTCTTCTTCCTCTACTTTGCTGCTTGCAGAAGTGGAAATGAGTGAATAA
____________________________________________________________
consensus TCTTCTTCTTCTTCTTCTTCCTCTACTTTGCTGCTTGCAGAAGTGGAAATGAGTGAATAA
. : . : . : . : . : . :
JMFF015F24+ TTCTTTTTTTCTTTTTCTTTGTTTTTATTTTTTTTTTTGTGTTTTATATTTTGTGAGAAT
JMFF040D17+ TTCTTTTTTTCTTTTTCTTTGTTTTTAT--TTTTTTTTGTGTTTTATATTTTGTGAGAAT
____________________________________________________________
consensus TTCTTTTTTTCTTTTTCTTTGTTTTTATTTTTTTTTTTGTGTTTTATATTTTGTGAGAAT
. : . : . : . : . : . :
JMFF015F24+ TTTGATTGGTGAGGAGAGGAGCCTAAAGATGAAAATCTAACAAAGTC
JMFF040D17+ TTTGATTGGTGAGGAGAGGAGCCTAAAGATGAAAATCTAACAAAGTCTTATCTCTTTCTC
____________________________________________________________
consensus TTTGATTGGTGAGGAGAGGAGCCTAAAGATGAAAATCTAACAAAGTCTTATCTCTTTCTC