Contig 012946:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039P16Sequence482012946 (8)ref|XP_009629004.1|1e-72PREDICTED: putative cytochrome c oxidase subunit 5b-like [Nicotiana tomentosifo733012946 (8)ref|XP_009629004.1|3e-73PREDICTED: putative cytochrome c oxidase subunit 5b-like [Nicotiana tomentosifo
JMFF040N05Sequence587012946 (8)ref|XP_009629004.1|3e-72PREDICTED: putative cytochrome c oxidase subunit 5b-like [Nicotiana tomentosifo732012946 (8)ref|XP_009629004.1|2e-71PREDICTED: putative cytochrome c oxidase subunit 5b-like [Nicotiana tomentosifo
JMFN020K19Sequence428012946 (8)ref|XP_009598185.1|1e-57PREDICTED: putative cytochrome c oxidase subunit 5b-like isoform X1 [Nicotiana
JMFN029M14Sequence623012946 (8)ref|XP_009629004.1|1e-73PREDICTED: putative cytochrome c oxidase subunit 5b-like [Nicotiana tomentosifo
JMFN030N06Sequence276012946 (8)ref|XP_009629004.1|9e-23PREDICTED: putative cytochrome c oxidase subunit 5b-like [Nicotiana tomentosifo
JMFS130F05Sequence623012946 (8)ref|XP_009629004.1|2e-73PREDICTED: putative cytochrome c oxidase subunit 5b-like [Nicotiana tomentosifo

Alignment

This contig is upended


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JMFS130F05+                                          AGCTTTTGAATCCTGATTTTGCAGAACAA
JMFN020K19+                                                              GCAGAACAA
JMFF040N05+                                                            TTGCAGAACAA
                      ____________________________________________________________
consensus                                            AGCTTTTGAATCCTGATTTTGCAGAACAA
 
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JMFS130F05+           CTAATCTGTCAAAATCTAAACCAGATTTATTCTGGTAGAAGAATTGCAGTTTCAGTGATG
JMFN029M14+                                                          AGTTTCAGTGATG
rJMFF039P16-                                                         AGTTTCAGTGATG
rJMFF040N05-                                                         AGTTTCAGTGATG
JMFN020K19+           CTAATCTGTCAAAATCTAAACCAGATTTATTCTGGTAGAAGAATTGCAGTTTCAGTGATG
JMFF040N05+           CTAATCTGTCAAAATCTAAACCAGATTTATTCTGGTAGAAGAATTGCAGTTTCAGTGATG
                      ____________________________________________________________
consensus             CTAATCTGTCAAAATCTAAACCAGATTTATTCTGGTAGAAGAATTGCAGTTTCAGTGATG
 
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JMFS130F05+           ATGATCGTCGTCATGGTCACCATGACCGTCGGGTGGTCCTCCAGGGCCAACCACAT-CCA
JMFN029M14+           ATGATCGTCGTCATGGTCACCATGACCGTCGGGTGGTCCTCCAGGGCCAACCACAT-CCA
rJMFF039P16-          ATGATCGTCGTCATGGTCACCATGACCGTCGGGTGGTCCTCCAGGGCCAACCACAT-CCA
rJMFF040N05-          ATGATCGTCGTCATGGTCACCATGACCGTCGGGTGGTCCTCCAGGGCCAACCACAT-CCA
JMFN020K19+           ATGATCGTCGTCATGGTCACCATGACCGTCGGGTGGTCCTCCAGGGCCAACCACAT-CCA
JMFF040N05+           ATGATCGTCGTCATGGTCACCATGACCGTCGGGTGGTCCTCCAGGGCCAACCACATCCCA
JMFF039P16+                                                                    CCA
                      ____________________________________________________________
consensus             ATGATCGTCGTCATGGTCACCATGACCGTCGGGTGGTCCTCCAGGGCCAACCACAT-CCA
 
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JMFS130F05+           AAGCAAAGTACTGCGTGCACACAGGGCATTCATGTGGCTTGCCTTTCTCCAACCAGAACC
JMFN029M14+           AAGCAAAGTACTGCGTGCACACAGGGCATTCATGTGGCTTGCCTTTCTCCAACCAGAACC
rJMFF039P16-          AAGCAAAGTACTGCGTGCACACAGGGCATTCATGTGGCTTGCCTTTCTCCAACCAGAACC
rJMFF040N05-          AAGCAAAGTACTGCGTGCACACAGGGCATTCATGTGGCTTGCCTTTCTCCAACCAGAACC
JMFN020K19+           AAGCAAAGTACTGCGTGCACACAGGGCATTCATGTGGCTTGCCTTTCTCCAACCAGAACC
JMFF040N05+           AAGCAAAGTACTGCGTGCACACAGGGCATTCATGTGGCTTGCCTTTCTCCAACCAGAACC
JMFF039P16+           AAGCAAAGTACTGCGTGCACACAGGGCATTCATGTGGCTTGCCTTTCTCCAACCAGAACC
                      ____________________________________________________________
consensus             AAGCAAAGTACTGCGTGCACACAGGGCATTCATGTGGCTTGCCTTTCTCCAACCAGAACC
 
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JMFS130F05+           AAACGACATCATGCTCATCCTCGCCTTCCCCTCCAGGGCACCCGACAATTCTTTTGTCAT
JMFN029M14+           AAACGACATCATGCTCATCCTCGCCTTCCCCTCCAGGGCACCCGACAATTCTTTTGTCAT
rJMFF039P16-          AAACGACATCATGCTCATCCTCGCCTTCCCCTCCAGGGCACCCGACAATTCTTTTGTCAT
rJMFF040N05-          AAACGACATCATGCTCATCCTCGCCTTCCCCTCCAGGGCACCCGACAATTCTTTTGTCAT
JMFN020K19+           AAACGACATCATGCTCATCCTCGCCTTCCCCTCCAGGGCACCCGACAATTCTTTTGTCAT
JMFF040N05+           AAACGACATCATGCTCATCCTCGCCTTCCCCTCCAGGGCACCCGACAATTCTTTTGTCAT
JMFF039P16+           AAACGACATCATGCTCATCCTCGCCTTCCCCTCCAGGGCACCCGACAATTCTTTTGTCAT
                      ____________________________________________________________
consensus             AAACGACATCATGCTCATCCTCGCCTTCCCCTCCAGGGCACCCGACAATTCTTTTGTCAT
 
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JMFS130F05+           AGTAGGATTTGACAATAGCAGGTGCTTCCTTAGTACCAAAAGGACCTTCAGGAAAGTCGA
JMFN029M14+           AGTAGGATTTGACAATAGCAGGTGCTTCCTTAGTACCAAAAGGACCTTCAGGAAAGTCGA
rJMFF039P16-          AGTAGGATTTGACAATAGCAGGTGCTTCCTTAGTACCAAAAGGACCTTCAGGAAAGTCGA
rJMFF040N05-          AGTAGGATTTGACAATAGCAGGTGCTTCCTTAGTACCAAAAGGACCTTCAGGAAAGTCGA
JMFN020K19+           AGTAGGATTTGACAATAGCAGGTGCTTCCTTAGTACCAAAAGGACCTTCAGGAAAGTCGA
JMFF040N05+           AGTAGGATTTGACAATAGCAGGTGCTTCCTTAGTACCAAAAGGACCTTCAGGAAAGTCGA
JMFF039P16+           AGTAGGATTTGACAATAGCAGGTGCTTCCTTAGTACCAAAAGGACCTTCAGGAAAGTCGA
                      ____________________________________________________________
consensus             AGTAGGATTTGACAATAGCAGGTGCTTCCTTAGTACCAAAAGGACCTTCAGGAAAGTCGA
 
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JMFS130F05+           TGTCTAGGATTTGTCTTCCTTCAAGCTCAGCTTGGAGCTCTTCCCGTTCGTGACCGGTCG
JMFN029M14+           TGTCTAGGATTTGTCTTCCTTCAAGCTCAGCTTGGAGCTCTTCCCGTTCGTGACCGGTCG
rJMFF039P16-          TGTCTAGGATTTGTCTTCCTTCAAGCTCAGCTTGGAGCTCTTCCCGTTCGTGACCGGTCG
rJMFF040N05-          TGTCTAGGATTTGTCTTCCTTCAAGCTCAGCTTGGAGCTCTTCCCGTTCGTGACCGGTCG
JMFN020K19+           TGTCTAGGATTTGTCTTCCTTCAAGCTCAGCTTGGAGCTCTTCCCGTTCGTGACCGGTCG
JMFF040N05+           TGTCTAGGATTTGTCTTCCTTCAAGCTCAGCTTGGAGCTCTTCCCGTTCGTGACCGGTCG
JMFN030N06+               TAGGATTTGTCTTCCTTCAAGCTCAGCTTGGAGCTCTTCCCGTTCGTGACCGGTCG
JMFF039P16+           TGTCTAGGATTTGTCTTCCTTCAAGCTCAGCTTGGAGCTCTTCCCGTTCGTGACCGGTCG
                      ____________________________________________________________
consensus             TGTCTAGGATTTGTCTTCCTTCAAGCTCAGCTTGGAGCTCTTCCCGTTCGTGACCGGTCG
 
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JMFS130F05+           CAATAGGCATTACATTTTCGACTCGCTTCTTCGAAACAACATTTTCAG            
JMFN029M14+           CAATAGGCATTACATTTTCGACTCGCTTCTTCGAAACAACATTTTCAGCGACGGCGTTGA
rJMFF039P16-          CAATAGGCATTACATTTTCGACTCGCTTCTTCGAAACAACATTTTCGGCGACGGCGTTGA
rJMFF040N05-          CAATAGGCATTACATTTTCGACTCGCTTCTTCGAAACAACATTTTCAGCGACGGCGTTGA
JMFN020K19+           CAATAGGCATTACATTTTCGACTCGCTTCTTCGAAACAACATTTTCAGCGACGGCGTT  
JMFF040N05+           CAATAGGCATTACATTTTCGACTCGCTTCTTCGAAACAACATTTTCAGCGACGGCGTTGA
JMFN030N06+           CAATAGGCATTACATTTTCGACTCGCTTCTTCGAAACAACATTTTCAGCGACGGCGTTGA
JMFF039P16+           CAATAGGCATTACATTTTCGACTCGCTTCTTCGAAACAACATTTTCGGCGACGGCGTTGA
                      ____________________________________________________________
consensus             CAATAGGCATTACATTTTCGACTCGCTTCTTCGAAACAACATTTTCAGCGACGGCGTTGA
 
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JMFN029M14+           AGTAACGAGACAGGAGAGCGACGGACGGTCGGAGGACCGCTGTGGACGGAGATGAAGAAG
rJMFF039P16-          AGTAACGAGACAGGAGAGCGACGGACGGTCGGAGGACCGCTGTGGACGGAGATGAAGAAG
rJMFF040N05-          AGTAACGAGACAGGAGAGCGACGGACGGACGGAGGACCGCTGTGGACGGAGATGAAGAAG
JMFF040N05+           AGTAACGAGACAGGAGAGCGACGGACGGACGGAGGACCGCTGTGGACGGAGATGAAGAAG
JMFN030N06+           AGTAACGAGACAGGAGAGCGACGGACGGTCGGAGGACCGCTGTGGACGGAGATGAAGAAG
JMFF039P16+           AGTAACGAGACAGGAGAGCGACGGACGGTCGGAGGACCGCTGTGGACGGAGATGAAGAAG
                      ____________________________________________________________
consensus             AGTAACGAGACAGGAGAGCGACGGACGGTCGGAGGACCGCTGTGGACGGAGATGAAGAAG
 
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JMFN029M14+           CGGCTGCGAATCTGGAGAGCGTAGGAGTGGATCGGAGCAGCTGGATAGAGAGTCTTCTCC
rJMFF039P16-          CGGCTGCGAATCTGGAGAGCGTAGGAGTGGATCGGAGCAGCTGGATAGAGAGTCTTCTCC
rJMFF040N05-          CGGCTGCGAATCTGGAGAGCGTANGAGTGGATCGGAGCAGCTGGATAGAGAGTCTTCTCC
JMFF040N05+           CGGCTGCGAATCTGGAGAGCGTAGGAGTGGATCGGAGCAGCTGGATAGAGAGTCTTCTCC
JMFN030N06+           CGGCTGCGAATCTGGAGAGCGTAGGAGTGGATCGGAGCAGCTGGATAGAGAGTCTTCTCC
JMFF039P16+           CGGCTGCGAATCTGGAGAGCGTAGGAGTGGATCGGAGCAGCTGGATAGAGAGTCTTCTCC
                      ____________________________________________________________
consensus             CGGCTGCGAATCTGGAGAGCGTAGGAGTGGATCGGAGCAGCTGGATAGAGAGTCTTCTCC
 
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JMFN029M14+           ACATGGTGGC                                                  
rJMFF039P16-          ACAT-GGTGGCGATGCTGGAAGCCTC                                  
rJMFF040N05-          ACATGGGTGGCGATGCTGGAAGCCTCTTA                               
JMFF040N05+           ACAT-GGTGGCGATGCTGGAAGCCTCTTAGGGTTAAC                       
JMFN030N06+           ACAT-GGTGGCGATGCTGGAAGCCTCTTAGGGTTAAC                       
JMFF039P16+           ACAT-GGTGGCGATGCTGGAAGCCTCTTAGGGTTAACAACTGTAATGTGATCTCAGGTCC
                      ____________________________________________________________
consensus             ACAT-GGTGGCGATGCTGGAAGCCTCTTAGGGTTAACAACTGTAATGTGATCTCAGGTCC