| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF014G20 | Sequence | 518 | 012939 (6) | ref|XP_009795380.1| | 5e-38 | PREDICTED: uncharacterized protein LOC104242088 isoform X2 [Nicotiana sylvestri | 748 | 012939 (6) | emb|CDP11506.1| | 3e-30 | unnamed protein product [Coffea canephora] |
| JMFF038L02 | Sequence | 556 | 012939 (6) | ref|XP_009795380.1| | 2e-24 | PREDICTED: uncharacterized protein LOC104242088 isoform X2 [Nicotiana sylvestri | 735 | 012939 (6) | ref|XP_006338057.1| | 176 | PREDICTED: uncharacterized protein LOC102606343 [Solanum tuberosum] |
| JMSF045N19 | Sequence | 770 | 012939 (6) | ref|XP_004252717.1| | 183 | PREDICTED: uncharacterized protein LOC101249158 [Solanum lycopersicum] ref|XP_01 | 781 | 012939 (6) | ref|XP_006338057.1| | 171 | PREDICTED: uncharacterized protein LOC102606343 [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMFF014G20- TTATAATGGGATGATACATTATCCAGTTATTTACAGT
____________________________________________________________
consensus TTATAATGGGATGATACATTATCCAGTTATTTACAGT
. : . : . : . : . : . :
rJMFF014G20- AGAACATCTTCATTCACAATCAAACTGATCTATATGCAACAAGGTAGAATAAAGAACCAA
____________________________________________________________
consensus AGAACATCTTCATTCACAATCAAACTGATCTATATGCAACAAGGTAGAATAAAGAACCAA
. : . : . : . : . : . :
rJMFF014G20- GCAATAGATGTCACATAATTATATACTCCAAATTCCAAAGAATGTTTGTAAGGCACACGA
rJMFF038L02- AATGTTTGTAAGGCACACGA
rJMSF045N19- AGGCACACGA
____________________________________________________________
consensus GCAATAGATGTCACATAATTATATACTCCAAATTCCAAAGAATGTTTGTAAGGCACACGA
. : . : . : . : . : . :
rJMFF014G20- CATAACCCCGCCTTCTCCCTTCCTCGTTCTGGTTTAGCGTTTTCTAAGCCTAAGCTAGAG
rJMFF038L02- CATAACCCCGCCTTCTCCCTTCCTCGTTCTGGTTTAGCGTTTTCTAAGCCTAAGCTAGAG
rJMSF045N19- CATAACCCCGCCTTCTCCCTTCCTCGTTCTGGTTTAGCGTTTTCTAAGCCTAAGCTAGAG
____________________________________________________________
consensus CATAACCCCGCCTTCTCCCTTCCTCGTTCTGGTTTAGCGTTTTCTAAGCCTAAGCTAGAG
. : . : . : . : . : . :
rJMFF014G20- AGCCAAGAGACAAGACACCATATAATCAACCTAGTACTAAAATTGCATATTTACATTCTT
rJMFF038L02- AGCCAAGAGACAAGACACCATATAATCAACCTAGTACTAAAATTGCATATTTACATTCTT
rJMSF045N19- AGCCAAGAGACAAGACACCATATAATCAACCTAGTACTAAAATTGCATATTTACATTCTT
____________________________________________________________
consensus AGCCAAGAGACAAGACACCATATAATCAACCTAGTACTAAAATTGCATATTTACATTCTT
. : . : . : . : . : . :
rJMFF014G20- CATCGTCTTTTACTTTAGACACACGATCATATAGGAAGCACAATATTTCAATCCTCTGCT
rJMFF038L02- CATCGTCTTTTACTTTAGACACACGATCATATAGGAAGCACAATATTTCAATCCTCTGCT
rJMSF045N19- CATCGTCTTTTACTTTAGACACACGATCATATAGGAAGCACAATATTTCAATCCTCTGCT
____________________________________________________________
consensus CATCGTCTTTTACTTTAGACACACGATCATATAGGAAGCACAATATTTCAATCCTCTGCT
. : . : . : . : . : . :
rJMFF014G20- GTTTATTCTCGTATCTTAGTGTTCTTGATTCCCCGCCTTTCTTGTTTGTGAGACTTTAAC
rJMFF038L02- GTTTATTCTCGTATCTTAGTGTTCTTGATTCCCCGCCTTTCTTGTTTGTGAGACTTTAAC
rJMSF045N19- GTTTATTCTCGTATCTTAGTGTTCTTGATTCCCCGCCTTTCTTGTTTGTGAGACTTTAAC
____________________________________________________________
consensus GTTTATTCTCGTATCTTAGTGTTCTTGATTCCCCGCCTTTCTTGTTTGTGAGACTTTAAC
. : . : . : . : . : . :
rJMFF014G20- GATTCTGAAGTGAGGAAAGCCATTGTTCCATGTATGTCTTGCTGTCTGCATTGTCTGTGG
rJMFF038L02- GATTCTGAAGTGAGGAAAGCCATTGTTCCATGTATGTCTTGCTGTCTGCATTGTCTGTGG
rJMSF045N19- GATTCTGAAGTGAGGAAAGCCATTGTTCCATGTATGTCTTGCTGTCTGCATTGTCTGTGG
____________________________________________________________
consensus GATTCTGAAGTGAGGAAAGCCATTGTTCCATGTATGTCTTGCTGTCTGCATTGTCTGTGG
. : . : . : . : . : . :
rJMFF014G20- CATATATATCTGGGATGTTTCGAATGGTGCACAGAAACTGTTCTTGCAAATTGTTTGCTA
rJMFF038L02- CATATATATCTGGGATGTTTCGAATGGTGCACAGAAACTGTTCTTGCAAATTGTTTGCTA
rJMSF045N19- CATATATATCTGGGATGTTTCGAATGGTGCACAGAAACTGTTCTTGCAAATTGTTTGCTA
JMSF045N19+ TGGGATGTTTCGAATGGTGCACAGAAACTGTTCTTGCAAATTGTTTGCTA
____________________________________________________________
consensus CATATATATCTGGGATGTTTCGAATGGTGCACAGAAACTGTTCTTGCAAATTGTTTGCTA
. : . : . : . : . : . :
rJMFF014G20- AATTGATTCCACCACCACCACCACCGCGCCCATAGCAAGGAACCAGCACAGCGAAACTAT
rJMFF038L02- AATTGATTCCACCACCACCACCACCGCGCCCATAGCAAGGAACCAGCACAGCGAAACTAT
rJMSF045N19- AATTGATTCCACCACCACCACCACCGCGCCCATAGCAAGGAACCAGCACAGCGAAACTAT
JMSF045N19+ AATTGATTCCACCACCACCACCACCGCGCCCATAGCAAGGAACCAGCACAGCGAAACTAT
____________________________________________________________
consensus AATTGATTCCACCACCACCACCACCGCGCCCATAGCAAGGAACCAGCACAGCGAAACTAT
. : . : . : . : . : . :
rJMFF014G20- CATCTGATTCATCGTCACTTTGGAAGCCCGAGCCATGAGGCTCCATCCATCCAATTGACC
rJMFF038L02- CATCTGATTCATCGTCACTTTGGAAGCCCGAGCCATGAGGCTCCATCCATCCAATTGACC
rJMSF045N19- CATCTGATTCATCGTCACTTTGGAAGCCCGAGCCATGAGGCTCCATCCATCCAATTGACC
JMSF045N19+ CATCTGATTCATCGTCACTTTGGAAGCCCGAGCCATGAGGCTCCATCCATCCAATTGACC
____________________________________________________________
consensus CATCTGATTCATCGTCACTTTGGAAGCCCGAGCCATGAGGCTCCATCCATCCAATTGACC
. : . : . : . : . : . :
rJMFF014G20- AATCGGAATCATCAGAATCAGACCCCGACACACATCCACCGTCCGATGGCACGAGAACAA
rJMFF038L02- AATCGGAATCATCAGAATCAGACCCCGACACACATCCACCGTCCGATGGCACGAGAACAA
rJMSF045N19- AATCGGAATCATCAGAATCAGACCCCGACACACATCCACCGTCCGATGGCACGAGAACAA
JMFF014G20+ CGTCCGATGGCACGAGAACAA
JMSF045N19+ AATCGGAATCATCAGAATCAGACCCCGACACACATCCACCGTCCGATGGCACGAGAACAA
____________________________________________________________
consensus AATCGGAATCATCAGAATCAGACCCCGACACACATCCACCGTCCGATGGCACGAGAACAA
. : . : . : . : . : . :
rJMFF014G20- TGTCATACTCTTTATCAACCTTCCTCTCCTCCCTGCTGTGCCATTTCCGCT
rJMFF038L02- TGTCATACTCTTTATCAACCTTCCTCTCCTCCCTGCTGTGCCATTTCCGCTTAACCCTTC
rJMSF045N19- TGTCATACTCTTTATCAACCTTCCTCTCCTCCCTGCTGTGCCATTTCCGCTTAACCCTTC
JMFF014G20+ TGTCATACTCTTTATCAACCTTCCTCTCCTCCCTGCTGTGCCATTTCCGCTTAACCCTTC
JMSF045N19+ TGTCATACTCTTTATCAACCTTCCTCTCCTCCCTGCTGTGCCATTTCCGCTTAACCCTTC
JMFF038L02+ CCATTTCCGCTTAACCCTTC
____________________________________________________________
consensus TGTCATACTCTTTATCAACCTTCCTCTCCTCCCTGCTGTGCCATTTCCGCTTAACCCTTC
. : . : . : . : . : . :
rJMFF038L02- TGGAAGTGGAAGCCATATTTTGCCTGCGATCGAGGGGAAACTTCACGGTATCCAATTCCC
rJMSF045N19- TGGAAGTGGAAGCCATATTTTGCCTGCGATCGAGGGGAAACTTCACGGTATCCAATTCCC
JMFF014G20+ TGGAAGTGGAAGCCATATTTTGCCTGCGATCGAGGGGAAACTTCACGGTATCCAATTCCC
JMSF045N19+ TGGAAGTGGAAGCCATATTTTGCCTGCGATCGAGGGGAAACTTCACGGTATCCAATTCCC
JMFF038L02+ TGGAAGTGGAAGCCATATTTTGCCTGCGATCGAGGGGAAACTTCACGGTATCCAATTCCC
____________________________________________________________
consensus TGGAAGTGGAAGCCATATTTTGCCTGCGATCGAGGGGAAACTTCACGGTATCCAATTCCC
. : . : . : . : . : . :
rJMFF038L02- ACAACCCAGATTCAGGCAATGGG--TTTAAGGTACT-CCCTTTCGAGATTTTGGGTTC
rJMSF045N19- ACAACCCAGATTCAGGCAATGGGGTTTAANGGTACTCCCCTTTCGAGATTTNGGGTTCTT
JMFF014G20+ ACAACCCAGATTCAGGCAATGGG--TTTAAGGTACT-CCCTTTCGAGATTTTGGGTTCTT
JMSF045N19+ ACAACCCAGATTCAGGCAATGGG--TTTAAGGTACT-CCCTTTCGAGATTTTGGGTTCTT
JMFF038L02+ ACAACCCAGATTCAGGCAATGGG--TTTAAGGTACT-CCCTTTCGAGATTTTGGGTTCTT
____________________________________________________________
consensus ACAACCCAGATTCAGGCAATGGG--TTTAAGGTACT-CCCTTTCGAGATTTTGGGTTCTT
. : . : . : . : . : . :
rJMSF045N19- GGTGTTTCCCCACTCCACAGCCACCATGACAGGGAGGTTAATGCTATAG
JMFF014G20+ GGTGTTT-CCCACTCCACAGCCACCATGACAGGGAGGTTAATGCTATAGCCATTCTGCAA
JMSF045N19+ GGTGTTT-CCCACTCCACAGCCACCATGACAGGGAGGTTAATGCTATAGCCATTCTGCAA
JMFF038L02+ GGTGTTT-CCCACTCCACAGCCACCATGACAGGGAGGTTAATGCTATAGCCATTCTGCAA
____________________________________________________________
consensus GGTGTTT-CCCACTCCACAGCCACCATGACAGGGAGGTTAATGCTATAGCCATTCTGCAA
. : . : . : . : . : . :
JMFF014G20+ AAAGCCCAAGAATTGCTTGGATCTTCAAGCGAAAACCGAAATCCAATACTCTGGGTATTC
JMSF045N19+ AAAGCCCAAGAATTGCTTGGATCTTCAAGCGAAAACCGAAATCCAATACTCTGGGTATTC
JMFF038L02+ AAAGCCCAAGAATTGCTTGGATCTTCAAGCGAAAACCGAAATCCAATACTCTGGGTATTC
____________________________________________________________
consensus AAAGCCCAAGAATTGCTTGGATCTTCAAGCGAAAACCGAAATCCAATACTCTGGGTATTC
. : . : . : . : . : . :
JMFF014G20+ AAACAGATATTTCACCAGATAGAATTCAAAACTCAATATGCTGACCAAATCAACCAGATT
JMSF045N19+ AAACAGATATTTCACCAGATAGAATTCAAAACTCAATATGCTGACCAAATCAACCAGATT
JMFF038L02+ AAACAGATATTTCACCAGATAGAATTCAAAACTCAATATGCTGACCAAATCAACCAGATT
____________________________________________________________
consensus AAACAGATATTTCACCAGATAGAATTCAAAACTCAATATGCTGACCAAATCAACCAGATT
. : . : . : . : . : . :
JMFF014G20+ GGTTATCCTTAAGGAACAAAAAATAGATAATGATCAGAGGCCTCTGCTAAACGCTATAAT
JMSF045N19+ GGTTATCCTTAAGGAACAAAAAATAGATAATGATCAGAGGCCTCTGCTAAACGCTATAAT
JMFF038L02+ GGTTATCCTTAAGGAACAAAAAATAGATAATGATCAGAGGCCTCTGCTAAACGCTATAAT
____________________________________________________________
consensus GGTTATCCTTAAGGAACAAAAAATAGATAATGATCAGAGGCCTCTGCTAAACGCTATAAT
. : . : . : . : . : . :
JMFF014G20+ AATATTTACATAAAAAGCTTTCCGAACTGTGAATTTGATGTTTGTAAGAAAGAAGAAGAT
JMSF045N19+ AATATTTACATAAAAAGCTTTCCGAACTGTGAATTTGATGTTTGTAAGAAAGAAGAAGAT
JMFF038L02+ AATATTTACATAAAAAGCTTTCCGAACTGTGAATTTGATGTTTGTAAGAAAGAAGAAGAT
____________________________________________________________
consensus AATATTTACATAAAAAGCTTTCCGAACTGTGAATTTGATGTTTGTAAGAAAGAAGAAGAT
. : . : . : . : . : . :
JMFF014G20+ AAAGATTTAGAGAGAGCGAAG
JMSF045N19+ AAAGATTTAGAGAGAGCGAAGGAGTGAAGAGAAAGGCTTTAGGGTGTTCTCTATCTTTAG
JMFF038L02+ AAAGATTTAGAGAGAGCGAAGGAGTGAAGAGAAAGGCTTTAGGGTGTTCTCTATCTTTAG
____________________________________________________________
consensus AAAGATTTAGAGAGAGCGAAGGAGTGAAGAGAAAGGCTTTAGGGTGTTCTCTATCTTTAG
. : . : . : . : . : . :
JMSF045N19+ GAC
JMFF038L02+ GACTCAGTAGTTTGAAGCCGTGTGATTGTTTTCTTCTTCACAGGAATCACAGCTTCTCAT
____________________________________________________________
consensus GACTCAGTAGTTTGAAGCCGTGTGATTGTTTTCTTCTTCACAGGAATCACAGCTTCTCAT