Contig 012930:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036E07Sequence579012930 (6)gb|AGK06902.1|1e-80chloroplast ferredoxin-thioredoxin reductase catalytic chain [Nicotiana bentham635012930 (6)gb|AGK06902.1|2e-80chloroplast ferredoxin-thioredoxin reductase catalytic chain [Nicotiana bentham
JMSF001G06Sequence410012930 (6)gb|AGK06902.1|1e-66chloroplast ferredoxin-thioredoxin reductase catalytic chain [Nicotiana bentham596012930 (6)gb|AGK06902.1|4e-80chloroplast ferredoxin-thioredoxin reductase catalytic chain [Nicotiana bentham
JMSF035L04Sequence616012930 (6)gb|AGK06902.1|2e-80chloroplast ferredoxin-thioredoxin reductase catalytic chain [Nicotiana bentham564012930 (6)gb|AGK06902.1|8e-81chloroplast ferredoxin-thioredoxin reductase catalytic chain [Nicotiana bentham

Alignment

This contig is upended


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rJMSF001G06+                                        GTGTTAATCAGTGCCGCCATGAGCGCTCTT
JMSF001G06-                                         GTGTTAATCAGTGCCGCCATGAGCGCTCTT
rJMFF036E07+                               CTTTGATTTGTGTTAATCAGTGCCGCCATGAGCGCTCTT
JMFF036E07-                                    GATTTGTGTTAATCAGTGCCGCCATGAGCGCTCTT
                      ____________________________________________________________
consensus                                  CTTTGATTTGTGTTAATCAGTGCCGCCATGAGCGCTCTT
 
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rJMSF001G06+          CGTGCCTCCACTTCCTACAGCATCGGATTCGGCATCTCCACCTTCTCTGCTCCTCCGACT
JMSF001G06-           CGTGCCTCCACTTCCTACAGCATCGGATTCGGCATCTCCACCTTCTCTGCTCCTCCGACT
rJMFF036E07+          CGTGCCTCCACTTCCTACAGCATCGGATTCGGCATCTCCACCTTCTCTGCTCCTCCGACT
JMFF036E07-           CGTGCCTCCACTTCCTACAGCATCGGATTCGGCATCTCCACCTTCTCTGCTCCTCCGACT
                      ____________________________________________________________
consensus             CGTGCCTCCACTTCCTACAGCATCGGATTCGGCATCTCCACCTTCTCTGCTCCTCCGACT
 
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rJMSF001G06+          AGGTCGTCTTCTTCCACTCACCGCCGCCATGTTACCTTTGCCAGTGCTGAGCCATCTGAG
JMSF001G06-           AGGTCGTCTTCTTCCACTCACCGCCGCCATGTTACCTTTGCCAGTGCTGAGCCATCTGAG
rJMFF036E07+          AGGTCGTCTTCTTCCACTCACCGCCGCCATGTTACCTTTGCCAGTGCTGAGCCATCTGAG
rJMSF035L04+                                                             CCATCTGAG
JMSF035L04-                                                              CCATCTGAG
JMFF036E07-           AGGTCGTCTTCTTCCACTCACCGCCGCCATGTTACCTTTGCCAGTGCTGAGCCATCTGAG
                      ____________________________________________________________
consensus             AGGTCGTCTTCTTCCACTCACCGCCGCCATGTTACCTTTGCCAGTGCTGAGCCATCTGAG
 
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rJMSF001G06+          AAATCTGTTGAAATTATGAGGAAGTTCTCGGAGCAGTATGCTCGGAAGTCGGGAACATAT
JMSF001G06-           AAATCTGTTGAAATTATGAGGAAGTTCTCGGAGCAGTATGCTCGGAAGTCGGGAACATAT
rJMFF036E07+          AAATCTGTTGAAATTATGAGGAAGTTCTCGGAGCAGTATGCTCGGAAGTCGGGAACATAT
rJMSF035L04+          AAATCTGTTGAAATTATGAGGAAGTTCTCGGAGCAGTATGCTCGGAAGTCGGGAACATAT
JMSF035L04-           AAATCTGTTGAAATTATGAGGAAGTTCTCGGAGCAGTATGCTCGGAAGTCGGGAACATAT
JMFF036E07-           AAATCTGTTGAAATTATGAGGAAGTTCTCGGAGCAGTATGCTCGGAAGTCGGGAACATAT
                      ____________________________________________________________
consensus             AAATCTGTTGAAATTATGAGGAAGTTCTCGGAGCAGTATGCTCGGAAGTCGGGAACATAT
 
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rJMSF001G06+          TTCTGTATGGATAAAGGGGTTACTGCAGTTGTTATCAAGGGATNGGCAGAACACAGGGAT
JMSF001G06-           TTCTGTATGGATAAAGGGGTTACTGCAGTTGTTATCAAGGGATTGGCAGAACACAGGGAT
rJMFF036E07+          TTCTGTATGGATAAAGGGGTTACTGCAGTTGTTATCAAGGGATTGGCAGAACACAGGGAT
rJMSF035L04+          TTCTGTATGGATAAAGGGGTTACTGCAGTTGTTATCAAGGGATTGGCAGAACACAGGGAT
JMSF035L04-           TTCTGTATGGATAAAGGGGTTACTGCAGTTGTTATCAAGGGATTGGCAGAACACAGGGAT
JMFF036E07-           TTCTGTATGGATAAAGGGGTTACTGCAGTTGTTATCAAGGGATTGGCAGAACACAGGGAT
                      ____________________________________________________________
consensus             TTCTGTATGGATAAAGGGGTTACTGCAGTTGTTATCAAGGGATTGGCAGAACACAGGGAT
 
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rJMSF001G06+          ACATTGGGTGCACCTCTCTGCCCCTGCAGGCACTATGATGATAAAAATGCAGAAGCTGAG
JMSF001G06-           ACATTGGGTGCACCTCTCTGCCCCTGCAGGCACTATGATGATAAAAATGCAGAAGCTGAG
rJMFF036E07+          ACATTGGGTGCACCTCTCTGCCCCTGCAGGCACTATGATGATAAAAATGCAGAAGCTGAG
rJMSF035L04+          ACATTGGGTGCACCTCTCTGCCCCTGCAGGCACTATGATGATAAAAATGCAGAAGCTGAG
JMSF035L04-           ACATTGGGTGCACCTCTCTGCCCCTGCAGGCACTATGATGATAAAAATGCAGAAGCTGAG
JMFF036E07-           ACATTGGGTGCACCTCTCTGCCCCTGCAGGCACTATGATGATAAAAATGCAGAAGCTGAG
                      ____________________________________________________________
consensus             ACATTGGGTGCACCTCTCTGCCCCTGCAGGCACTATGATGATAAAAATGCAGAAGCTGAG
 
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rJMSF001G06+          CAGGGCTTCTGGAATTGTCCTTGTGTACCAATGAGAGAGAGGAAGGAGTGCCACTGCATG
JMSF001G06-           CAGGGCTTCTGGAATTGTCCTTGTGTACCAATGAGAGAGAGGAAGGAGTGCCACTGCATG
rJMFF036E07+          CAGGGCTTCTGGAATTGTCCTTGTGTACCAATGAGAGAGAGGAAGGAGTGCCACTGCATG
rJMSF035L04+          CAGGGCTTCTGGAATTGTCCTTGTGTACCAATGAGAGAGAGGAAGGAGTGCCACTGCATG
JMSF035L04-           CAGGGCTTCTGGAATTGTCCTTGTGTACCAATGAGAGAGAGGAAGGAGTGCCACTGCATG
JMFF036E07-           CAGGGCTTCTGGAATTGTCCTTGTGTACCAATGAGAGAGAGGAAGGAGTGCCACTGCATG
                      ____________________________________________________________
consensus             CAGGGCTTCTGGAATTGTCCTTGTGTACCAATGAGAGAGAGGAAGGAGTGCCACTGCATG
 
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rJMSF001G06+          CTTTTTCTCACCTCTGATAATGATTTTGCTGGAGAAGAACAGACTATTTCTTTGGAGGAG
JMSF001G06-           CTTTTTCTCACCTCTGATA                                         
rJMFF036E07+          CTTTTTCTCACCTCTGATAATGATTTTGCTGGAGAAGAACAGACTATTTCTTTGGAGGAG
rJMSF035L04+          CTTTTTCTCACCTCTGATAATGATTTTGCTGGAGAAGAACAGACTATTTCTTTGGAGGAG
JMSF035L04-           CTTTTTCTCACCTCTGATAATGATTTTGCTGGAGAAGAACAGACTATTTCTTTGGAGGAG
JMFF036E07-           CTTTTTCTCACCTCTGATAATGATTTTGCTGGAGAAGAACAGACTATTTCTTTGGAGGAG
                      ____________________________________________________________
consensus             CTTTTTCTCACCTCTGATAATGATTTTGCTGGAGAAGAACAGACTATTTCTTTGGAGGAG
 
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rJMSF001G06+          ATCAGAGAAACAACCTCTAATATGTGAT                                
rJMFF036E07+          ATCAGAGAAACAACCTCTAATATGTGAT                                
rJMSF035L04+          ATCAGAGAAACAACCTCTAATATGTGATTCATCACACCTTGGATTTGTCCGCTACATTGC
JMSF035L04-           ATCAGAGAAACAACCTCTAATATGTGATTCATCACACCTTGGATTTGTCCGCTACATTGC
JMFF036E07-           ATCAGAGAAACAACCTCTAATATGTGATTCATCACACCTTGGATTTGTCCGCTACATTGC
                      ____________________________________________________________
consensus             ATCAGAGAAACAACCTCTAATATGTGATTCATCACACCTTGGATTTGTCCGCTACATTGC
 
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rJMSF035L04+          ATATG                                                       
JMSF035L04-           ATATGTAGATATGTGTGCTCACCAATAATATGCTAGTATTTCATGTTA            
JMFF036E07-           ATATGTAGATATGTGTGCTCACCAATAATATGCTAGTATTTCATGTTATTATATTCGGAA
                      ____________________________________________________________
consensus             ATATGTAGATATGTGTGCTCACCAATAATATGCTAGTATTTCATGTTATTATATTCGGAA