| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034C06 | Sequence | 493 | 012925 (6) | ref|XP_006357605.1| | 5e-20 | PREDICTED: uncharacterized protein LOC102582673 isoform X2 [Solanum tuberosum] | 781 | 012925 (6) | ref|XP_007044791.1| | 7e-112 | Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gb|EOY00623 |
| JMFF035H24 | Sequence | 450 | 012925 (6) | ref|XP_009591642.1| | 105 | PREDICTED: uncharacterized protein LOC104088638 [Nicotiana tomentosiformis] | 768 | 012925 (6) | ref|XP_007044791.1| | 9e-112 | Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gb|EOY00623 |
| JMFF044K17 | Sequence | 633 | 012925 (6) | ref|XP_006357605.1| | 6e-20 | PREDICTED: uncharacterized protein LOC102582673 isoform X2 [Solanum tuberosum] | 616 | 012925 (6) | ref|XP_007044791.1| | 2e-99 | Tetratricopeptide repeat-like superfamily protein [Theobroma cacao] gb|EOY00623 |
This contig is upended
. : . : . : . : . : . :
rJMFF044K17- ACCCTGGAGAGTTTTTTTTTTTTTTTCAGTGCAAGTGGAATGTTTATAA
rJMFF035H24- TCAGTGCAAGTGGAATGTTTATAA
____________________________________________________________
consensus ACCCTGGAGAGTTTTTTTTTTTTTTTCAGTGCAAGTGGAATGTTTATAA
. : . : . : . : . : . :
rJMFF044K17- GCTATCAAACAACCAACAAATACTTTACAAGTATCATGGAAGAAATTTACACATATACAA
rJMFF035H24- GCTATCAAACAA-CAACAAATACTTTACAAGTATCATGGAAGAAATTTACACATATACAA
rJMFF034C06- CAACAAATACTTTACAAGTATCATGGAAGAAATTTACACATATACAA
____________________________________________________________
consensus GCTATCAAACAACCAACAAATACTTTACAAGTATCATGGAAGAAATTTACACATATACAA
. : . : . : . : . : . :
rJMFF044K17- CACCATTCATCTTTGCAAAAAGATAGCAGCACCAACCAAACCTATCCATAGTGTTAGAGC
rJMFF035H24- CACCATTCATCTTTGCAAAAAGATAGCAGCACCAACCAAACCTATCCATAGTGTTAGAGC
rJMFF034C06- CACCATTCATCTTTGCAAAAAGATAGCAGCACCAACCAAACCTATCCATAGTGTTAGAGC
____________________________________________________________
consensus CACCATTCATCTTTGCAAAAAGATAGCAGCACCAACCAAACCTATCCATAGTGTTAGAGC
. : . : . : . : . : . :
rJMFF044K17- CACCCAAAACGTCTGGCTTTTCTCCAAACCAACGGGCGGTTTCCACACTAGAAAGTCCCC
rJMFF035H24- CACCCAAAACGTCTGGCTTTTCTCCAAACCAACGGGCGGTTTCCACACTAGAAAGTCCCC
rJMFF034C06- CACCCAAAACGTCTGGCTTTTCTCCAAACCAACGGGCGGTTTCCACACTAGAAAGTCCCC
____________________________________________________________
consensus CACCCAAAACGTCTGGCTTTTCTCCAAACCAACGGGCGGTTTCCACACTAGAAAGTCCCC
. : . : . : . : . : . :
rJMFF044K17- CACCCAGTCCCTGGATGATGGTACTTGATTGGTTGTTGTAACGCCACTCTGCATTTGCTC
rJMFF035H24- CACCCAGTCCCTGGATGATGGTACTTGATTGGTTGTTGTAACGCCACTCTGCATTTGCTC
rJMFF034C06- CACCCAGTCCCTGGATGATGGTACTTGATTGGTTGTTGTAACGCCACTCTGCATTTGCTC
____________________________________________________________
consensus CACCCAGTCCCTGGATGATGGTACTTGATTGGTTGTTGTAACGCCACTCTGCATTTGCTC
. : . : . : . : . : . :
rJMFF044K17- TTTGTCCTTGTTCTTATCGGTCCATGTTGCTGCATAGCTATCATAGCTAGAACCAATTAA
rJMFF035H24- TTTGTCCTTGTTCTTATCGGTCCATGTTGCTGCATAGCTATCATAGCTAGAACCAATTAA
rJMFF034C06- TTTGTCCTTGTTCTTATCGGTCCATGTTGCTGCATAGCTATCATAGCTAGAACCAATTAA
____________________________________________________________
consensus TTTGTCCTTGTTCTTATCGGTCCATGTTGCTGCATAGCTATCATAGCTAGAACCAATTAA
. : . : . : . : . : . :
rJMFF044K17- CGGTATGGTGACCATCTCCTCTTGGGATATCTTGAGCTTAGGTGCCTGCAATATGTAACG
rJMFF035H24- CGGTATGGTGACCATCTCCTCTTGGGATATCTTGAGCTTAGGTGCCTGCAATATGTAACG
rJMFF034C06- CGGTATGGTGACCATCTCCTCTTGGGATATCTTGAGCTTAGGTGCCTGCAATATGTAACG
____________________________________________________________
consensus CGGTATGGTGACCATCTCCTCTTGGGATATCTTGAGCTTAGGTGCCTGCAATATGTAACG
. : . : . : . : . : . :
rJMFF044K17- AAGCTCTTTAGCTTGGCGCCGAATGCTAACACTAGGATGGGTCTTTTCCAAATCCTTGTA
rJMFF035H24- AAGCTCTTTAGCTTGGCGCCGAATGCTAACACTAGGATGGGTCTTTTCCAAATCCTTGTA
rJMFF034C06- AAGCTCTTTAGCTTGGCGCCGAATGCTAACACTAGGATGGGTCTTTTCCAAATCCTTGTA
____________________________________________________________
consensus AAGCTCTTTAGCTTGGCGCCGAATGCTAACACTAGGATGGGTCTTTTCCAAATCCTTGTA
. : . : . : . : . : . :
rJMFF044K17- CAAAGTAATGCAGTCTGTGTGTCGGTTATTTGCTTCATAAGCCATAGCGAGCCAAATTTG
rJMFF035H24- CAAAGTAATGCAGTCTGTGTGTCGGTTATTTGCTTCATAAGCCATAGCGAGCCAAATTTG
rJMFF034C06- CAAAGTAATGCAGTCTGTGTGTCGGTTATTTGCTTCATAAGCCATAGCGAGCCAAATTTG
____________________________________________________________
consensus CAAAGTAATGCAGTCTGTGTGTCGGTTATTTGCTTCATAAGCCATAGCGAGCCAAATTTG
. : . : . : . : . : . :
rJMFF044K17- AATCTCCCCGCCAAATAAGGTAGGCCTCGGAATTATTGTCAGGGCTCCTTCTAGAAACTC
rJMFF035H24- AATCTCCCCGCCAAATAAGGTAGGCCTCGGAATTATTGTCAGGGCTCCTTCTAGAAACTC
rJMFF034C06- AATCTCCCCGCCAAATAAGGTAGGCCTCGGAATTATTGTCAGGGCTCCTTCTAGAAACTC
JMFF044K17+ AGAAACTC
____________________________________________________________
consensus AATCTCCCCGCCAAATAAGGTAGGCCTCGGAATTATTGTCAGGGCTCCTTCTAGAAACTC
. : . : . : . : . : . :
rJMFF044K17- AATTGCACGCCCATAACTACCCTTCCC
rJMFF035H24- AATTGCACGCCCATAACTACCCTTCCCGTAAGCCTTCTGGCCCAGATCAAACATTAACTG
rJMFF034C06- AATTGCACGCCCATAACTACCCTTCCCGTAAGCCTTCTGGCCCAGATCAAACATTAACTG
JMFF044K17+ AATTGCACGCCCATAACTACCCTTCCCGTAAGCCTTCTGGCCCAGATCAAACATTAACTG
____________________________________________________________
consensus AATTGCACGCCCATAACTACCCTTCCCGTAAGCCTTCTGGCCCAGATCAAACATTAACTG
. : . : . : . : . : . :
rJMFF035H24- AGCCGTTCTTCTCCTCTCTGCTTGCTCCTTCGCCACCTTTTCGAGCTCTTTCCTCACTTT
rJMFF034C06- AGCCGTTCTTCTCCTCTCTGCTTGCTCCTTCGCCACCTTTTCGAGCTCTTTCCTCACTTT
JMFF044K17+ AGCCGTTCTTCTCCTCTCTGCTTGCTCCTTCGCCACCTTTTCGAGCTCTTTCCTCACTTT
____________________________________________________________
consensus AGCCGTTCTTCTCCTCTCTGCTTGCTCCTTCGCCACCTTTTCGAGCTCTTTCCTCACTTT
. : . : . : . : . : . :
rJMFF035H24- CTCGCGCTTCTCCTCCTCGGGTTCTTGATTCTTCTCACTCCCTTCATCGNACTCTTCATC
rJMFF034C06- CTCGCGCTTCTCCTCCTCGGTTTCTTGATTCTTCTCACTCCCTTCATCGTACTCTTCATC
JMFF044K17+ CTCGCGCTTCTCCTCCTCGGTTTCTTGATTCTTCTCACTCCCTTCATCGTACTCTTCATC
JMFF034C06+ TCGGTTTCTTGATTCTTCTCACTCCCTTCATCGTACTCTTCATC
____________________________________________________________
consensus CTCGCGCTTCTCCTCCTCGGTTTCTTGATTCTTCTCACTCCCTTCATCGTACTCTTCATC
. : . : . : . : . : . :
rJMFF035H24- AA
rJMFF034C06- AACGCGGNTCTGCAACTCCTCAGCCTTCCTCTCCAGCTCCCTTCATCTCTTCAAGCTCCT
JMFF044K17+ AACGCGGTTCTGCAACTCCTCAGCCTTCCTCTCCAGCT-CCTTCATCTCTTCAAGCTCCT
JMFF034C06+ AACGCGGTTCTGCAACTCCTCAGCCTTCCTCTCCAGCT-CCTTCATCTCTTCAAGCTCCT
JMFF035H24+ TCTCCAGCT-CCTTCATCTCTTCAAGCTCCT
____________________________________________________________
consensus AACGCGGTTCTGCAACTCCTCAGCCTTCCTCTCCAGCT-CCTTCATCTCTTCAAGCTCCT
. : . : . : . : . : . :
rJMFF034C06- TC
JMFF044K17+ TCACTCTCCTCCTCATCATCTCCCTCTCCCAGCGGGCCTTGTCCTCTCTCTCTTCCTCCT
JMFF034C06+ TCACTCTCCTCCTCATCATCTCCCTCTCCCAGCGGGCCTTGTCCTCTCTCTCTTCCTCCT
JMFF035H24+ TCACTCTCCTCCTCATCATCTCCCTCTCCCAGCGGGCCTTGTCCTCTCTCTCTTCCTCCT
____________________________________________________________
consensus TCACTCTCCTCCTCATCATCTCCCTCTCCCAGCGGGCCTTGTCCTCTCTCTCTTCCTCCT
. : . : . : . : . : . :
JMFF044K17+ CCTCCTCCTCGAACCCATTTCCGTTGCCGCCGTTCTCGTCGTCGCTCGAGTTCTCGTAGT
JMFF034C06+ CCTCCTCCTCGAACCCATTTCCGTTGCCGCCGTTCTCGTCGTCGCTCGAGTTCTCGTAGT
JMFF035H24+ CCTCCTCCTCGAACCCATTTCCGTTGCCGCCGTTCTCGTCGTCGCTCGAGTTCTCGTAGT
____________________________________________________________
consensus CCTCCTCCTCGAACCCATTTCCGTTGCCGCCGTTCTCGTCGTCGCTCGAGTTCTCGTAGT
. : . : . : . : . : . :
JMFF044K17+ CCACCGCGCCCGCCTTGGACTTCGCCTTCCCGCGCAACCCCACCTTCGGATTCCGGCTGT
JMFF034C06+ CCACCGCGCCCGCCTTGGACTTCGCCTTCCCGCGCAACCCCACCTTCGGATTCCGGCTGT
JMFF035H24+ CCACCGCGCCCGCCTTGGACTTCGCCTTCCCGCGCAACCCCACCTTCGGATTCCGGCTGT
____________________________________________________________
consensus CCACCGCGCCCGCCTTGGACTTCGCCTTCCCGCGCAACCCCACCTTCGGATTCCGGCTGT
. : . : . : . : . : . :
JMFF044K17+ CCTTGTCGTACTCGAAGCCGGTCGCCGCCAGGGACGCGTGGCCGTGCGGGGTTTCTCTCT
JMFF034C06+ CCTTGTCGTACTCGAAGCCGGTCGCCGCCAGGGACGCGTGGCCGTGCGGGGTTTCTCTCT
JMFF035H24+ CCTTGTCGTACTCGAAGCCGGTCGCCGCCAGGGACGCGTGGCCGTGCGGGGTTTCTCTCT
____________________________________________________________
consensus CCTTGTCGTACTCGAAGCCGGTCGCCGCCAGGGACGCGTGGCCGTGCGGGGTTTCTCTCT
. : . : . : . : . : . :
JMFF044K17+ TGGCGAAGAGGTTGAACACGACGTCGTTGGGCGGCGCCCGGATCTTGCGGTCCTGAGGCG
JMFF034C06+ TGGCGAAGAGGTTGAACACGACGTCGTTGGGCGGCGCCCGGATCTTGCGGTCCTGAGGCG
JMFF035H24+ TGGCGAAGAGGTTGAACACGACGTCGTTGGGCGGCGCCCGGATCTTGCGGTCCTGAGGCG
____________________________________________________________
consensus TGGCGAAGAGGTTGAACACGACGTCGTTGGGCGGCGCCCGGATCTTGCGGTCCTGAGGCG
. : . : . : . : . : . :
JMFF044K17+ GCACAGCACGTGGGAGAGTCACGTGGGTTCCATCCAGCAGTACGGCTATGTTCCCCATCG
JMFF034C06+ GCACAGCACGTGGGAGAGTCACGTGGCTTCCATCCAGCAGTACGGCTATGTTCCCCATCG
JMFF035H24+ GCACAGCACGTGGGAGAGTCACGTGGCTTCCATCCAGCAGTACGGCTATGTTCCCCATCG
____________________________________________________________
consensus GCACAGCACGTGGGAGAGTCACGTGGCTTCCATCCAGCAGTACGGCTATGTTCCCCATCG
. : . : . : . : . : . :
JMFF044K17+ CCACCGCCATGTTTGTGTATCTGATT
JMFF034C06+ CCACCGCCATGTTTGTGTATCTGATT
JMFF035H24+ CCACCGCCATGTTTGTGTATCTGATTGAGTGAAGAAGGAAATGGAAAGAGAAGCCGACTC
____________________________________________________________
consensus CCACCGCCATGTTTGTGTATCTGATTGAGTGAAGAAGGAAATGGAAAGAGAAGCCGACTC