| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF032B18 | Sequence | 573 | 012916 (4) | gb|AHF22110.1| | 4e-67 | lumazine synthase 2 [Lycium chinense] | 738 | 012916 (4) | ref|XP_011074016.1| | 2e-108 | PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Sesamum indi |
| JMSF035L24 | Sequence | 665 | 012916 (4) | gb|AHF22110.1| | 2e-92 | lumazine synthase 2 [Lycium chinense] | 680 | 012916 (4) | ref|XP_011074016.1| | 1e-105 | PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Sesamum indi |
This contig is upended
. : . : . : . : . : . :
rJMSF035L24- GGATTTCCTCGGTTCATACTTTATT
rJMFF032B18- ATGGATTTCCTCGGTTCATACTTTATT
____________________________________________________________
consensus ATGGATTTCCTCGGTTCATACTTTATT
. : . : . : . : . : . :
rJMSF035L24- CTGGGACAAGAAATCAAAGAGAAGAATAGAAAGTTGTCATCGCATGAAGGGGATACATGC
rJMFF032B18- CTGGGACAAGAAATCAAAGAGAAGAATAGAAAGTTGTCATCGCATGAAGGGGATACATGC
____________________________________________________________
consensus CTGGGACAAGAAATCAAAGAGAAGAATAGAAAGTTGTCATCGCATGAAGGGGATACATGC
. : . : . : . : . : . :
rJMSF035L24- GCCTTTTCACTAACCTAACAGCCAC--ATATCCTTCCCTTAAACCGAGTGAGATGGAACG
rJMFF032B18- GCCTTTTCACTAACCTAACAGCCACATATATCCTTCCCTTAAACCGAGTGAGATGGAACG
____________________________________________________________
consensus GCCTTTTCACTAACCTAACAGCCACATATATCCTTCCCTTAAACCGAGTGAGATGGAACG
. : . : . : . : . : . :
rJMSF035L24- AGCCCGCCTATTGTAAAGTCTTTAGGTGGTGCTCAAAGAGAGATGCCATCTCAATAGCAG
rJMFF032B18- AGCCCGCCTATTGTAAAGTCTTTAGGTGGTGCTCAAAGAGAGATGCCATCTCAATAGCAG
____________________________________________________________
consensus AGCCCGCCTATTGTAAAGTCTTTAGGTGGTGCTCAAAGAGAGATGCCATCTCAATAGCAG
. : . : . : . : . : . :
rJMSF035L24- TCAAAGCCGCTTCAGCACCTTTATTGCCAGACTTGCCCCCAGCACGATTTATGGCCTGTT
rJMFF032B18- TCAAAGCCGCTTCAGCACCTTTATTGCCAGACTTGCCCCCAGCACGATTTATGGCCTGTT
JMSF035L24+ CAGACTTGCCCCCAGCACGATTTATGGCCTGTT
____________________________________________________________
consensus TCAAAGCCGCTTCAGCACCTTTATTGCCAGACTTGCCCCCAGCACGATTTATGGCCTGTT
. : . : . : . : . : . :
rJMSF035L24- CCATGTCGTCGCATGTCAAAACACCAAATATGCAAGGAACACCTGAATTGAGACCTGCCG
rJMFF032B18- CCATGTCGTCGCATGTCAAAACACCAAATATGCAAGGAACACCTGAATTGAGACCTGCCG
JMSF035L24+ CCATGTCGTCGCATGTCAAAACACCAAATATGCAAGGAACACCTGAATTGAGACCTGCCG
____________________________________________________________
consensus CCATGTCGTCGCATGTCAAAACACCAAATATGCAAGGAACACCTGAATTGAGACCTGCCG
. : . : . : . : . : . :
rJMSF035L24- AAAGCACTCCTGATGCTGCTGAATTAGCAACAGCATCATAATGAGTAGTATCGCCTCTAA
rJMFF032B18- AAAGCACTCCTGATGCTGCTGAATTAGCAACAGCATCATAATGAGTAGTATCGCCTCTAA
JMSF035L24+ AAAGCACTCCTGATGCTGCTGAATTAGCAACAGCATCATAATGAGTAGTATCGCCTCTAA
JMFF032B18+ CAACAGCATCATAATGAGTAGTATCGCCTCTAA
____________________________________________________________
consensus AAAGCACTCCTGATGCTGCTGAATTAGCAACAGCATCATAATGAGTAGTATCGCCTCTAA
. : . : . : . : . : . :
rJMSF035L24- CCACAGCACCAATACACAAGATTGCTTGATATTTTCTCGACTTTCCAAGCTTCTCTGCAA
rJMFF032B18- CCACAGCACCAATACACAAGATTGCTTGATATTTTCTCGACTTTCCAAGCTTCTCTGCAA
JMSF035L24+ CCACAGCACCAATACACAAGATTGCTTGATATTTTCTCGACTTTCCAAGCTTCTCTGCAA
JMFF032B18+ CCACAGCACCAATACACAAGATTGCTTGATATTTTCTCGACTTTCCAAGCTTCTCTGCAA
____________________________________________________________
consensus CCACAGCACCAATACACAAGATTGCTTGATATTTTCTCGACTTTCCAAGCTTCTCTGCAA
. : . : . : . : . : . :
rJMSF035L24- CCACACCTATTTCAAAACTACCAGGAACCCAGACAACATCAACATCTTCTTCTCTGACAG
rJMFF032B18- CCACACCTATTTCAAAACTACCAGGAACCCAGACAACATCAACATCTTCTTCTCTGACAG
JMSF035L24+ CCACACCTATTTCAAAACTACCAGGAACCCAGACAACATCAACATCTTCTTCTCTGACAG
JMFF032B18+ CCACACCTATTTCAAAACTACCAGGAACCCAGACAACATCAACATCTTCTTCTCTGACAG
____________________________________________________________
consensus CCACACCTATTTCAAAACTACCAGGAACCCAGACAACATCAACATCTTCTTCTCTGACAG
. : . : . : . : . : . :
rJMSF035L24- AGTATCTCTTGAAAGTGTCCAGTGCTCCCTCCAAAAGCGGCTTCGTGATAATTTCATTGA
rJMFF032B18- AGTATCTCTTGAAAGTGTCCAGTGCTCCCTCCAAAAGCGGCTTCGTGATAATTTCATTGA
JMSF035L24+ AGTATCTCTTGAAAGTGTCCAGTGCTCCCTCCAAAAGCGGCTTCGTGATAATTTCATTGA
JMFF032B18+ AGTATCTCTTGAAAGTGTCCAGTGCTCCCTCCAAAAGCGGCTTCGTGATAATTTCATTGA
____________________________________________________________
consensus AGTATCTCTTGAAAGTGTCCAGTGCTCCCTCCAAAAGCGGCTTCGTGATAATTTCATTGA
. : . : . : . : . : . :
rJMSF035L24- ATCGAGCCACCACAATAGCAAATCGGAGGCCCTCAGCAGAGGTTAAGGAACCAGTCAACT
rJMFF032B18- ATCGAGCCACCACAATAGCAAATCGGAGGCCCTCAGCAGAGGTTAAGGAACCAGTCAACT
JMSF035L24+ ATCGAGCCACCACAATAGCAAATCGGAGGCCCTCAGCAGAGGTTAAGGAACCAGTCAACT
JMFF032B18+ ATCGAGCCACCACAATAGCAAATCGGAGGCCCTCAGCAGAGGTTAAGGAACCAGTCAACT
____________________________________________________________
consensus ATCGAGCCACCACAATAGCAAATCGGAGGCCCTCAGCAGAGGTTAAGGAACCAGTCAACT
. : . : . : . : . : . :
rJMSF035L24- GACGAACGGCGGAAGTCTGTGCAAAACCTGAACGCTTCCGATCCCCCTCGACGAC
rJMFF032B18- GACGAACGGCGGAAGTCTGTGCAAAACCTGAACGCTTCCGATCCCCCTCGACGACGAAAC
JMSF035L24+ GACGAACGGCGGAAGTCTGTGCAAAACCTGAACGCTTCCGATCCCCCTCGACGACGAAAC
JMFF032B18+ GACGAACGGCGGAAGTCTGTGCAAAACCTGAACGCTTCCGATCCCCCTCGACGACGAAAC
____________________________________________________________
consensus GACGAACGGCGGAAGTCTGTGCAAAACCTGAACGCTTCCGATCCCCCTCGACGACGAAAC
. : . : . : . : . : . :
rJMFF032B18- CAAAGCCTCGAGGTTGGGTGAATGATAGAGAAGCAGATAGTTTAGTTGGCA
JMSF035L24+ CAAAGCCTCGAGGTTGGGTGAATGATAGAGAAGCAGATAGTTTAGTTGGCAGAGGAGGCG
JMFF032B18+ CAAAGCCTCGAGGTTGGGTGAATGATAGAGAAGCAGATAGTTTAGTTGGCAGAGGAGGCG
____________________________________________________________
consensus CAAAGCCTCGAGGTTGGGTGAATGATAGAGAAGCAGATAGTTTAGTTGGCAGAGGAGGCG
. : . : . : . : . : . :
JMSF035L24+ AATACGTGATTCTACCGCGCGAGAAAGAGAAAAGCTGAGGTTTCTCGGCGCAGGTACGAG
JMFF032B18+ AATACGTGATTCTACCGCGCGAGAAAGAGAAAAGCTGAGGTTTCTCGGCGCAGGTACGAG
____________________________________________________________
consensus AATACGTGATTCTACCGCGCGAGAAAGAGAAAAGCTGAGGTTTCTCGGCGCAGGTACGAG
. : . : . : . : . : . :
JMSF035L24+ GTAGAAGAAGACAGCAATCGGAAAAAGCAGCCGCCGCCATTATAGCTCTCAGTTTGTGTA
JMFF032B18+ GTAGAAGAAGACAGCAATCGGAAAAAGCAGCCGCCGCCATTATAGCTCTCAGTTTGTGTA
____________________________________________________________
consensus GTAGAAGAAGACAGCAATCGGAAAAAGCAGCCGCCGCCATTATAGCTCTCAGTTTGTGTA
. : . : . : . : . : . :
JMSF035L24+ GTTTGTCAACGATGGTGAGAGGCCAGAACTC
JMFF032B18+ GTTTGTCAACGATGGTGAGAGGCCAGAACTCTCTCAGTCTCGGTGTGGCAATCGGGAGAT
____________________________________________________________
consensus GTTTGTCAACGATGGTGAGAGGCCAGAACTCTCTCAGTCTCGGTGTGGCAATCGGGAGAT