Contig 012914:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031C14Sequence585012914 (3)ref|XP_006468291.1|2e-20PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Citrus sinensis] 538008545 (3)emb|CDP05614.1|1e-32unnamed protein product [Coffea canephora]
JMSF026H07Sequence648012914 (3)ref|XP_002281628.1|1e-33PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Vitis vinifera] ref|XP754008545 (3)ref|XP_004233176.1|1e-48PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Solanum lycopersicum]
JMSF036E01Sequence587012914 (3)ref|XP_006468291.1|1e-22PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Citrus sinensis] 707008545 (3)ref|XP_004233176.1|3e-38PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF026H07+ CTCTGTACATCCCAGCTAACTATAGTGCCATCCTNGGATGCGGAAAACC
                      ____________________________________________________________
consensus CTCTGTACATCCCAGCTAACTATAGTGCCATCCTNGGATGCGGAAAACC
 
. : . : . : . : . : . :
JMSF026H07+ CCTTTAAGTCATCTTCGGATAGAGCCACGGCAGTAACTGCTNGGCGATGTTTTAGTAAAA
JMSF036E01+ CGGATAGAGCCACGGCAGTAACTGCTTGGCGATGTTTTAGTAAAA
JMFF031C14+ CGGATAGAGCCACGGCAGTAACTGCTTGGCGATGTTTTAGTAAAA
                      ____________________________________________________________
consensus CCTTTAAGTCATCTTCGGATAGAGCCACGGCAGTAACTGCTTGGCGATGTTTTAGTAAAA
 
. : . : . : . : . : . :
JMSF026H07+ CTCGAAATCCTTCTCCAGGTTCTGGTGCCTGAATTCTAGAAGCAATGGCTCTTCGGGTGC
JMSF036E01+ CTCGAAATCCTTCTCCAGGTTCTGGTGCCTGAATTCTAGAAGCAATGGCTCTTCGGGTGC
JMFF031C14+ CTCGAAATCCTTCTCCAGGTTCTGGTGCCTGAATTCTAGAAGCAATGGCTCTTCGGGTGC
                      ____________________________________________________________
consensus CTCGAAATCCTTCTCCAGGTTCTGGTGCCTGAATTCTAGAAGCAATGGCTCTTCGGGTGC
 
. : . : . : . : . : . :
JMSF026H07+ GGCCGCTCTCTTCAAGCTGCTCCTGCTGCAAAATCTTGGCAACCAAAGAATCTCTCTTTC
JMSF036E01+ GGCCGCTCTCTTCAAGCTGCTCCTGCTGCAAAATCTTGGCAACCAAAGAATCTCTCTTTC
JMFF031C14+ GGCCGCTCTCTTCAAGCTGCTCCTGCTGCAAAATCTTGGCAACCAAAGAATCTCTCTTTC
                      ____________________________________________________________
consensus GGCCGCTCTCTTCAAGCTGCTCCTGCTGCAAAATCTTGGCAACCAAAGAATCTCTCTTTC
 
. : . : . : . : . : . :
JMSF026H07+ CTTCAATCTCCTCTCTATCTATCTCGTCCCCACTCTGTGTGTCTTCCTCATCCCTACTGG
JMSF036E01+ CTTCAATCTCCTCTCTATCTATCTCGTCCCCACTCTGTGTGTCTTCCTCATCCCTACTGG
JMFF031C14+ CTTCAATCTCCTCTCTATCTATCTCGTCCCCACTCTGTGTGTCTTCCTCATCCCTACTGG
                      ____________________________________________________________
consensus CTTCAATCTCCTCTCTATCTATCTCGTCCCCACTCTGTGTGTCTTCCTCATCCCTACTGG
 
. : . : . : . : . : . :
JMSF026H07+ CTATAGCCCTGATCTTTTCCAAGTACGCATCCGCCAGCCGCTTCTTCTTCTCGGCCGCGG
JMSF036E01+ CTATAGCCCTGATCTTTTCCAAGTACGCATCCGCCAGCCGCTTCTTCTTCTCGGCCGCGG
JMFF031C14+ CTATAGCCCTGATCTTTTCCAAGTACGCATCCGCCAGCCGCTTCTTCTTCTCGGCCGCGG
                      ____________________________________________________________
consensus CTATAGCCCTGATCTTTTCCAAGTACGCATCCGCCAGCCGCTTCTTCTTCTCGGCCGCGG
 
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JMSF026H07+ TTTCCTCAACTTCGTTATCCTCTTCATCTTCCTCCCCTCCTCCTACGCCTCCGGACAAGT
JMSF036E01+ TTTCCTCAACTTCGTTATCCTCTTCATCTTCCTCCCCTCCTCCTACGCCTCCGGACAAGT
JMFF031C14+ TTTCCTCAACTTCGTTATCCTCTTCATCTTCCTCCCCTCCTCCTTCGCCTCCGGACAAGT
                      ____________________________________________________________
consensus TTTCCTCAACTTCGTTATCCTCTTCATCTTCCTCCCCTCCTCCTACGCCTCCGGACAAGT
 
. : . : . : . : . : . :
JMSF026H07+ ATGCCTCGTCGTCATCGCTGCTCTCTATATCATCGTCGCCGGCAAACTTGCGGCGGCGCT
JMSF036E01+ ATGCCTCGTCGTCATCGCTGCTCTCTATATCATCGTCGCCGGCAAACTTGCGGCGGCGCT
JMFF031C14+ ATGCCTCGTCGTCATCGCTGCTCTCTATATCATCGTCGCCGGCAAACTTGCGGCGGCGCT
                      ____________________________________________________________
consensus ATGCCTCGTCGTCATCGCTGCTCTCTATATCATCGTCGCCGGCAAACTTGCGGCGGCGCT
 
. : . : . : . : . : . :
JMSF026H07+ TGTTGTCGCCTCCTTCCGACTCGAAAAACGGATCAGAAAATCTCTTCTTCTTTTGAGAAG
JMSF036E01+ TGTTGTCGCCTCCTTCCGACTCGAAAAACGGATCAGAAAATCTCTTCTTCTTTTGAGAAG
JMFF031C14+ TGTTGTCGCCTCCTTCCGACTCGAAAAACGGATCAGAAAATCTCTTCTTCTTTTGAGAAG
                      ____________________________________________________________
consensus TGTTGTCGCCTCCTTCCGACTCGAAAAACGGATCAGAAAATCTCTTCTTCTTTTGAGAAG
 
. : . : . : . : . : . :
JMSF026H07+ GAGCTGAAAAATTCTTCTTCTTCTTCATGCTTCTGCCCTTGGTTGAACTGAACTTCTATA
JMSF036E01+ GAGCTGAAAAATTCTTCTTCTTCTTCATGCTTCTGCCCTTGGTTGAACTGAACTTCTATA
JMFF031C14+ GAGCTGAAAAATTCTTCTTCTTCTTCATGCTTCTGCCCTTGGTTGAACTGAACTTCTATA
                      ____________________________________________________________
consensus GAGCTGAAAAATTCTTCTTCTTCTTCATGCTTCTGCCCTTGGTTGAACTGAACTTCTATA
 
. : . : . : . : . : . :
JMSF026H07+ AGTGTCGAAATATGTATGTGTTTATGCAACCCAGGGTTTACTGGGTTTAGGGTTTATT
JMSF036E01+ AGTGTCGAAATATGTATGTGTTTATGCAACCCAGGGTTTACTGGGTTTAGGGTTTATT
JMFF031C14+ AGTGTCGAAATATGTATGTGTTTATGCAACCCAGGGTTTACTGGGTTTAGGGTTTATTGT
                      ____________________________________________________________
consensus AGTGTCGAAATATGTATGTGTTTATGCAACCCAGGGTTTACTGGGTTTAGGGTTTATTGT