Contig 012914:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031C14Sequence585012914 (3)ref|XP_006468291.1|2e-20PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Citrus sinensis] 538008545 (3)emb|CDP05614.1|1e-32unnamed protein product [Coffea canephora]
JMSF026H07Sequence648012914 (3)ref|XP_002281628.1|1e-33PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Vitis vinifera] ref|XP754008545 (3)ref|XP_004233176.1|1e-48PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Solanum lycopersicum]
JMSF036E01Sequence587012914 (3)ref|XP_006468291.1|1e-22PREDICTED: U3 small nucleolar RNA-interacting protein 2-like [Citrus sinensis] 707008545 (3)ref|XP_004233176.1|3e-38PREDICTED: U3 small nucleolar RNA-interacting protein 2 [Solanum lycopersicum]

Alignment

This contig is upended


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JMSF026H07+                      CTCTGTACATCCCAGCTAACTATAGTGCCATCCTNGGATGCGGAAAACC
                      ____________________________________________________________
consensus                        CTCTGTACATCCCAGCTAACTATAGTGCCATCCTNGGATGCGGAAAACC
 
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JMSF026H07+           CCTTTAAGTCATCTTCGGATAGAGCCACGGCAGTAACTGCTNGGCGATGTTTTAGTAAAA
JMSF036E01+                          CGGATAGAGCCACGGCAGTAACTGCTTGGCGATGTTTTAGTAAAA
JMFF031C14+                          CGGATAGAGCCACGGCAGTAACTGCTTGGCGATGTTTTAGTAAAA
                      ____________________________________________________________
consensus             CCTTTAAGTCATCTTCGGATAGAGCCACGGCAGTAACTGCTTGGCGATGTTTTAGTAAAA
 
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JMSF026H07+           CTCGAAATCCTTCTCCAGGTTCTGGTGCCTGAATTCTAGAAGCAATGGCTCTTCGGGTGC
JMSF036E01+           CTCGAAATCCTTCTCCAGGTTCTGGTGCCTGAATTCTAGAAGCAATGGCTCTTCGGGTGC
JMFF031C14+           CTCGAAATCCTTCTCCAGGTTCTGGTGCCTGAATTCTAGAAGCAATGGCTCTTCGGGTGC
                      ____________________________________________________________
consensus             CTCGAAATCCTTCTCCAGGTTCTGGTGCCTGAATTCTAGAAGCAATGGCTCTTCGGGTGC
 
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JMSF026H07+           GGCCGCTCTCTTCAAGCTGCTCCTGCTGCAAAATCTTGGCAACCAAAGAATCTCTCTTTC
JMSF036E01+           GGCCGCTCTCTTCAAGCTGCTCCTGCTGCAAAATCTTGGCAACCAAAGAATCTCTCTTTC
JMFF031C14+           GGCCGCTCTCTTCAAGCTGCTCCTGCTGCAAAATCTTGGCAACCAAAGAATCTCTCTTTC
                      ____________________________________________________________
consensus             GGCCGCTCTCTTCAAGCTGCTCCTGCTGCAAAATCTTGGCAACCAAAGAATCTCTCTTTC
 
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JMSF026H07+           CTTCAATCTCCTCTCTATCTATCTCGTCCCCACTCTGTGTGTCTTCCTCATCCCTACTGG
JMSF036E01+           CTTCAATCTCCTCTCTATCTATCTCGTCCCCACTCTGTGTGTCTTCCTCATCCCTACTGG
JMFF031C14+           CTTCAATCTCCTCTCTATCTATCTCGTCCCCACTCTGTGTGTCTTCCTCATCCCTACTGG
                      ____________________________________________________________
consensus             CTTCAATCTCCTCTCTATCTATCTCGTCCCCACTCTGTGTGTCTTCCTCATCCCTACTGG
 
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JMSF026H07+           CTATAGCCCTGATCTTTTCCAAGTACGCATCCGCCAGCCGCTTCTTCTTCTCGGCCGCGG
JMSF036E01+           CTATAGCCCTGATCTTTTCCAAGTACGCATCCGCCAGCCGCTTCTTCTTCTCGGCCGCGG
JMFF031C14+           CTATAGCCCTGATCTTTTCCAAGTACGCATCCGCCAGCCGCTTCTTCTTCTCGGCCGCGG
                      ____________________________________________________________
consensus             CTATAGCCCTGATCTTTTCCAAGTACGCATCCGCCAGCCGCTTCTTCTTCTCGGCCGCGG
 
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JMSF026H07+           TTTCCTCAACTTCGTTATCCTCTTCATCTTCCTCCCCTCCTCCTACGCCTCCGGACAAGT
JMSF036E01+           TTTCCTCAACTTCGTTATCCTCTTCATCTTCCTCCCCTCCTCCTACGCCTCCGGACAAGT
JMFF031C14+           TTTCCTCAACTTCGTTATCCTCTTCATCTTCCTCCCCTCCTCCTTCGCCTCCGGACAAGT
                      ____________________________________________________________
consensus             TTTCCTCAACTTCGTTATCCTCTTCATCTTCCTCCCCTCCTCCTACGCCTCCGGACAAGT
 
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JMSF026H07+           ATGCCTCGTCGTCATCGCTGCTCTCTATATCATCGTCGCCGGCAAACTTGCGGCGGCGCT
JMSF036E01+           ATGCCTCGTCGTCATCGCTGCTCTCTATATCATCGTCGCCGGCAAACTTGCGGCGGCGCT
JMFF031C14+           ATGCCTCGTCGTCATCGCTGCTCTCTATATCATCGTCGCCGGCAAACTTGCGGCGGCGCT
                      ____________________________________________________________
consensus             ATGCCTCGTCGTCATCGCTGCTCTCTATATCATCGTCGCCGGCAAACTTGCGGCGGCGCT
 
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JMSF026H07+           TGTTGTCGCCTCCTTCCGACTCGAAAAACGGATCAGAAAATCTCTTCTTCTTTTGAGAAG
JMSF036E01+           TGTTGTCGCCTCCTTCCGACTCGAAAAACGGATCAGAAAATCTCTTCTTCTTTTGAGAAG
JMFF031C14+           TGTTGTCGCCTCCTTCCGACTCGAAAAACGGATCAGAAAATCTCTTCTTCTTTTGAGAAG
                      ____________________________________________________________
consensus             TGTTGTCGCCTCCTTCCGACTCGAAAAACGGATCAGAAAATCTCTTCTTCTTTTGAGAAG
 
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JMSF026H07+           GAGCTGAAAAATTCTTCTTCTTCTTCATGCTTCTGCCCTTGGTTGAACTGAACTTCTATA
JMSF036E01+           GAGCTGAAAAATTCTTCTTCTTCTTCATGCTTCTGCCCTTGGTTGAACTGAACTTCTATA
JMFF031C14+           GAGCTGAAAAATTCTTCTTCTTCTTCATGCTTCTGCCCTTGGTTGAACTGAACTTCTATA
                      ____________________________________________________________
consensus             GAGCTGAAAAATTCTTCTTCTTCTTCATGCTTCTGCCCTTGGTTGAACTGAACTTCTATA
 
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JMSF026H07+           AGTGTCGAAATATGTATGTGTTTATGCAACCCAGGGTTTACTGGGTTTAGGGTTTATT  
JMSF036E01+           AGTGTCGAAATATGTATGTGTTTATGCAACCCAGGGTTTACTGGGTTTAGGGTTTATT  
JMFF031C14+           AGTGTCGAAATATGTATGTGTTTATGCAACCCAGGGTTTACTGGGTTTAGGGTTTATTGT
                      ____________________________________________________________
consensus             AGTGTCGAAATATGTATGTGTTTATGCAACCCAGGGTTTACTGGGTTTAGGGTTTATTGT