Contig 012912:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030J14Sequence425012912 (2)ref|XP_010322440.1|97.1PREDICTED: uncharacterized protein LOC101253793 [Solanum lycopersicum]
JMFF042F20Sequence647012912 (2)ref|XP_010322440.1|112PREDICTED: uncharacterized protein LOC101253793 [Solanum lycopersicum]624005552 (13)ref|XP_011093116.1|1e-45PREDICTED: protein BPS1, chloroplastic-like [Sesamum indicum] ref|XP_011093118.1

Alignment

This contig is upended


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JMFF042F20+                        CAGGTGTGAGCCCTTAGGTAATATCATCGAAAAGGGATTCTTAAATG
                      ____________________________________________________________
consensus                          CAGGTGTGAGCCCTTAGGTAATATCATCGAAAAGGGATTCTTAAATG
 
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JMFF042F20+           GTAAATAGGGACGTTGAGGATCTTGTGGACGACTCATTTTATAATATAACGAAACGGATA
                      ____________________________________________________________
consensus             GTAAATAGGGACGTTGAGGATCTTGTGGACGACTCATTTTATAATATAACGAAACGGATA
 
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JMFF042F20+           GTTAGATCTTGAAACGGGAACTGATTGATAGAGTCAACGCCGCCGATTCTTAGCGATCGC
                      ____________________________________________________________
consensus             GTTAGATCTTGAAACGGGAACTGATTGATAGAGTCAACGCCGCCGATTCTTAGCGATCGC
 
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JMFF042F20+           AAGGAGATCCACATTTTTTGTTGGGGCATTTGGTGTAAAACCTTAAAGCCTCCGAGGTTG
JMFF030J14+                                                                  GGTTG
                      ____________________________________________________________
consensus             AAGGAGATCCACATTTTTTGTTGGGGCATTTGGTGTAAAACCTTAAAGCCTCCGAGGTTG
 
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JMFF042F20+           TGTAGTGTCCATGTGCTTCCACGATCTTAGATTCCTCGGTTTTTGGAACGTAGAGCTGTT
JMFF030J14+           TGTAGTGTCCATGTGCTTCCACGATCTTAGATTCCTCGGTTTTTGGAACGTAGAGCTGTT
                      ____________________________________________________________
consensus             TGTAGTGTCCATGTGCTTCCACGATCTTAGATTCCTCGGTTTTTGGAACGTAGAGCTGTT
 
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JMFF042F20+           GGGTGGCTCCGAGGATCTTGGCACTGCAGCCGCCGGGAGGCGGTGGGTTTGAGGCCACAC
JMFF030J14+           GGGTGGCTCCGAGGATCTTGGCACTGCAGCCGCCGGGAGGCGGTGGGTTTGAGGCCACAC
                      ____________________________________________________________
consensus             GGGTGGCTCCGAGGATCTTGGCACTGCAGCCGCCGGGAGGCGGTGGGTTTGAGGCCACAC
 
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JMFF042F20+           TTGTGTCAAAGCTGCCGTCTTCTTCCGTAATCGCCATGCCCAGTTTCTTCTCGTGGCTAC
JMFF030J14+           TTGTGTCAAAGCTGCCGTCTTCTTCCGTAATCGCCATGCCCAGTTTCTTCTCGTGGCTAC
                      ____________________________________________________________
consensus             TTGTGTCAAAGCTGCCGTCTTCTTCCGTAATCGCCATGCCCAGTTTCTTCTCGTGGCTAC
 
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JMFF042F20+           ACTTCACCGAGACCCTGATTCCTGAGAGATCATGGTGGGCATTGCAGTCCATGCAGGAGA
JMFF030J14+           ACTTCACCGAGACCCTGATTCCTGAGAGATCATGGTGGGCATTGCAGTCCATGCAGGAGA
                      ____________________________________________________________
consensus             ACTTCACCGAGACCCTGATTCCTGAGAGATCATGGTGGGCATTGCAGTCCATGCAGGAGA
 
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JMFF042F20+           CAGAGCCCTTGAGGACATAGGAAGCGGAGATGTTGACGGTGGCGGCGAGAGCCAGCGTAA
JMFF030J14+           CAGAGCCCTTGAGGACATAGGAAGCGGAGATGTTGACGGTGGCGGCGAGAGCCAGCGTAA
                      ____________________________________________________________
consensus             CAGAGCCCTTGAGGACATAGGAAGCGGAGATGTTGACGGTGGCGGCGAGAGCCAGCGTAA
 
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JMFF042F20+           TGAGAAGTGAGGTGATAAGAAGTTGAGGATGCGCCATTAAAGTAAAACTAAGCTGCTATT
JMFF030J14+           TGAGAAGTGAGGTGATAAGAAGTTGAGGATGCGCCATTAAAGTAAAACTAAGCTGCTATT
                      ____________________________________________________________
consensus             TGAGAAGTGAGGTGATAAGAAGTTGAGGATGCGCCATTAAAGTAAAACTAAGCTGCTATT
 
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JMFF042F20+           AGCATGCACAGTACAGCTAGTAGTATAGAGATGGAAATGGGAGCTGAGTGTGAGAATAGT
JMFF030J14+           AGCATGCACAGTACAGCTAGTAGTATAGAGATGGAAATGGGAGCTGAGTGTGAGAATAGT
                      ____________________________________________________________
consensus             AGCATGCACAGTACAGCTAGTAGTATAGAGATGGAAATGGGAGCTGAGTGTGAGAATAGT