Contig 012907:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF029N10+                                                     CACACCCAGCTCCTTGCA
                      ____________________________________________________________
consensus                                                       CACACCCAGCTCCTTGCA
 
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JMSF029N10+           CAGATCTATACATGCATCTGAATATTGTTTGCATAAATCATTGTTTCTAACTAGCTCGCT
                      ____________________________________________________________
consensus             CAGATCTATACATGCATCTGAATATTGTTTGCATAAATCATTGTTTCTAACTAGCTCGCT
 
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JMSF029N10+           GAAATATGAACTTGTGTTCTCTTTCACTTTGGCTTCATTGACAGGGGGGGAACTGAGAAA
                      ____________________________________________________________
consensus             GAAATATGAACTTGTGTTCTCTTTCACTTTGGCTTCATTGACAGGGGGGGAACTGAGAAA
 
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JMSF029N10+           GATGATTCGAATTGTGTCTGAAAGGCTCTTAAGATGAAGTGCTACTTTCCTCATGTTTTC
JMFF029J20+                                                          TCCTCATGTTTTC
                      ____________________________________________________________
consensus             GATGATTCGAATTGTGTCTGAAAGGCTCTTAAGATGAAGTGCTACTTTCCTCATGTTTTC
 
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JMSF029N10+           AATGTATTCAGGGAGTGGTACATGAGGACCAAGCCCAGAAGAGTGTGGTCCCATCGAGTC
JMFF029J20+           AATGTATTCAGGGAGTGGTACATGAGGACCAAGCCCAGAAGAGTGTGGTCCCATCGAGTC
                      ____________________________________________________________
consensus             AATGTATTCAGGGAGTGGTACATGAGGACCAAGCCCAGAAGAGTGTGGTCCCATCGAGTC
 
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JMSF029N10+           ATTACCACCGAAATAAACTATCACCAATTGAGGCTGAACTGCAGCATCCTTAGGAAAAAC
JMFF029J20+           ATTACCACCGAAATAAACTATCACCAATTGAGGCTGAACTGCAGCATCCTTAGGAAAAAC
                      ____________________________________________________________
consensus             ATTACCACCGAAATAAACTATCACCAATTGAGGCTGAACTGCAGCATCCTTAGGAAAAAC
 
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JMSF029N10+           TTTATCTAGAACTTGGACAGCACGTCGTGAGTTCCAACCATAATAACCTCGTAATAATAT
JMFF029J20+           TTTATCTAGAACTTGGACAGCACGTCGTGAGTTCCAACCATAATAACCTCGTAATAATAT
                      ____________________________________________________________
consensus             TTTATCTAGAACTTGGACAGCACGTCGTGAGTTCCAACCATAATAACCTCGTAATAATAT
 
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JMSF029N10+           ATCCGCTTTACGAGCGTAGACATCGGCGAGAATGGCACCCCAACCGCCGTTGCTGAAGCT
JMFF029J20+           ATCCGCTTTACGAGCGTAGACATCGGCGAGAATGGCACCCCAACCGCCGTTGCTGAAGCT
                      ____________________________________________________________
consensus             ATCCGCTTTACGAGCGTAGACATCGGCGAGAATGGCACCCCAACCGCCGTTGCTGAAGCT
 
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JMSF029N10+           GAGCTGAACTATCGACGATCCGAACAGCACAAACTGCGGTCTCTGTGGCCCCACCATTTC
JMFF029J20+           GAGCTGAACTATCGACGATCCGAACAGCACAAACTGCGGTCTCTGTGGCCCCACCATTTC
                      ____________________________________________________________
consensus             GAGCTGAACTATCGACGATCCGAACAGCACAAACTGCGGTCTCTGTGGCCCCACCATTTC
 
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JMSF029N10+           TGTGACTCGCAGTACAGTGCGCTAGATAGGCAAGCTTTACGGATCGCGGTAGCCGACGCC
JMFF029J20+           TGTGACTCGCAGTACAGTGCGCTAGATAGGCAAGCTTTACGGATCGCGGTAGCCGACGCC
                      ____________________________________________________________
consensus             TGTGACTCGCAGTACAGTGCGCTAGATAGGCAAGCTTTACGGATCGCGGTAGCCGACGCC
 
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JMSF029N10+           GGCGCCGGAACGTTTAGTTTTCCGGTGAGTAGCAGCGCGAGTGTTTGTTACAAAGTCGGT
JMFF029J20+           GGCGCCGGAACGTTTAGTTTTCCGGTGAGTAGCAGCGCGAGTGTTTGTTACAAAGTCGGT
                      ____________________________________________________________
consensus             GGCGCCGGAACGTTTAGTTTTCCGGTGAGTAGCAGCGCGAGTGTTTGTTACAAAGTCGGT
 
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JMSF029N10+           GTAAAGTAGCTGGCTACCGTTTTCTTTGAGCTGCCAATTTGAGAAGGTC           
JMFF029J20+           GTAAAGTAGCTGGCTACCGTTTTCTTTGAGCTGCCAATTTGAGAAGGTCAGACTCACAGT
                      ____________________________________________________________
consensus             GTAAAGTAGCTGGCTACCGTTTTCTTTGAGCTGCCAATTTGAGAAGGTCAGACTCACAGT