Contig 012906:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021B20Sequence505012906 (4)ref|XP_009122341.1|4e-28PREDICTED: pectinesterase PPME1 [Brassica rapa] gb|AGX13882.1| pectin methyleste733012464 (3)ref|XP_011076543.1|2e-24PREDICTED: pectinesterase 1-like [Sesamum indicum]
JMFF029H08Sequence448012906 (4)ref|XP_009122341.1|9e-28PREDICTED: pectinesterase PPME1 [Brassica rapa] gb|AGX13882.1| pectin methyleste746012464 (3)ref|XP_006365350.1|4e-66PREDICTED: pectinesterase 2-like [Solanum tuberosum]
JMFF048J17Sequence454012906 (4)ref|XP_009122341.1|2e-34PREDICTED: pectinesterase PPME1 [Brassica rapa] gb|AGX13882.1| pectin methyleste394012464 (3)
JMFS065B06Sequence615012906 (4)ref|XP_009122341.1|5e-48PREDICTED: pectinesterase PPME1 [Brassica rapa] gb|AGX13882.1| pectin methyleste

Alignment

This contig is upended


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JMFS065B06+                                    GATCCGGTTTACCAGAAGGCCTGGGAGCTGAATTC
                      ____________________________________________________________
consensus                                      GATCCGGTTTACCAGAAGGCCTGGGAGCTGAATTC
 
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JMFS065B06+           TTAACGTTAATATTAACGGCCATAAAGTAATCCGACAAAACATACAAAGTGGCACTGTAT
                      ____________________________________________________________
consensus             TTAACGTTAATATTAACGGCCATAAAGTAATCCGACAAAACATACAAAGTGGCACTGTAT
 
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JMFF048J17+                                                         TATCCTTAGGATCA
JMFF021B20+              GTACCAACTTGAGCAGCCGTAGCAGCAGCATCTATAGTTGGCCTATCCTTAGGATCA
JMFS065B06+           ATGGTACCAACTTGAGCAGCCGTAGCAGCAGCATCTATAGTGGGCCTATCCTTAGGATCA
                      ____________________________________________________________
consensus             ATGGTACCAACTTGAGCAGCCGTAGCAGCAGCATCTATAGTTGGCCTATCCTTAGGATCA
 
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JMFF048J17+           CCATACAAGGTGATGAAATGTTTA-CCGTAGTCGATCTTCACTCTCTCCTTATAAGTCCC
JMFF021B20+           CCATACAAGGTGATGAAATGTTTACCCGTAGTCGATCTTCACTCTCTCCTTATAAGTCCC
JMFS065B06+           CCATAGAAGGTGACGAAATGTTTA-TCGGGCTCAATCTTCACTCTCTCCTTATAAATCCC
JMFF029H08+                                             ATCTTCACTCTCTCCTTATAAGTCCC
                      ____________________________________________________________
consensus             CCATACAAGGTGATGAAATGTTTA-CCGTAGTCGATCTTCACTCTCTCCTTATAAGTCCC
 
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JMFF048J17+           ACCTGCTATGTTAATGATATAACGCTTTGTGTTTTTAGCAGGAATGGAGTTGATGGCTTC
JMFF021B20+           ACCTGCTATGTTAATGATATAACGCTTTGTGTTTTTAGCAGGAATGGAGTTGATGGCTTC
JMFS065B06+           ACCTGCTATGTTAATGATATGACGCTTTGTGTTCTTATGAGGAATGGAGTTGACGGCTTC
JMFF029H08+           ACCTGCTATGTTAATGATATAACGCTTTGTGTTTTTAGCAGGAATGGAGTTGATGGCTTC
                      ____________________________________________________________
consensus             ACCTGCTATGTTAATGATATAACGCTTTGTGTTTTTAGCAGGAATGGAGTTGATGGCTTC
 
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JMFF048J17+           TTGAATGGTTTTGAATTTGCCTCCTTTTCCGACCCCAATGTGCACTGGGGCGGCCTCCGC
JMFF021B20+           TTGAATGGTTTTGAATTTGCCTCCTTTTCCGACCCCAATGTGCACTGGGGCGGCCTCCGC
JMFS065B06+           TTGAATGGTTTTGAATTTGCCTCCTTTTCCGACCGCAATGTGCACCGGGGCGGCCTCCGC
JMFF029H08+           TTGAATGGTTTTGAATTTGCCTCCTTTTCCGACCCCAATGTGCACTGGGGCGGCCTCCGC
                      ____________________________________________________________
consensus             TTGAATGGTTTTGAATTTGCCTCCTTTTCCGACCCCAATGTGCACTGGGGCGGCCTCCGC
 
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JMFF048J17+           CGTTGTGAGGGCGGGGTCCAAACCCTTTCTGCCTGGAAGGGGTTGAACGTTGGCTTTGAA
JMFF021B20+           CGTTGTGAGGGCGGGGTCCAAACCCTTTCTGCCTGGAAGGGGTTGAACGTTGGCTTTGAA
JMFS065B06+           CGCTGTGAGGGCAGGGTCCAATCCCTTTCTGCCTGGAAGGGGTTGAACGTTGGCTTTGAA
JMFF029H08+           CGTTGTGAGGGCGGGGTCCAAACCCTTTCTGCCTGGAAGGGGTTGAACGTTGGCTTTGAA
                      ____________________________________________________________
consensus             CGTTGTGAGGGCGGGGTCCAAACCCTTTCTGCCTGGAAGGGGTTGAACGTTGGCTTTGAA
 
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JMFF048J17+           CCAACCCTCTACCGCAGACTTTTGTTGAGGAATAGGAGCCATGTCGTCTGAGGTAACACT
JMFF021B20+           CCAACCCTCTACCGCAGACTTTTGTTGAGGAATAGGAGCCATGTCGTCTGAGGTAACACT
JMFS065B06+           CCAACCCTCTACCTCAGACTTTTGTTGAGGAATAGGAACCATGTCGTTTGAGGTAACACT
JMFF029H08+           CCAACCCTCTACCGCAGACTTTTGTTGAGGAATAGGAGCCATGTCGTCTGAGGTAACACT
                      ____________________________________________________________
consensus             CCAACCCTCTACCGCAGACTTTTGTTGAGGAATAGGAGCCATGTCGTCTGAGGTAACACT
 
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JMFF048J17+           GCCCGGACAAAACGCTACAAATACACAGACAATAAGACTAACAACAACATTTATTGCTAC
JMFF021B20+           GCCCGGACAAAACGCTACAAATACACAGACAATAAGACTAACAACAACATTTATTGCTAC
JMFS065B06+           GCCTGGACAAAACACTACAACTACACAAACAATAACAATAACAACAACATTTATTACTAC
JMFF029H08+           GCCCGGACAAAACGCTACAAATACACAGACAATAAGACTAACAACAACATTTATTGCTAC
                      ____________________________________________________________
consensus             GCCCGGACAAAACGCTACAAATACACAGACAATAAGACTAACAACAACATTTATTGCTAC
 
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JMFF048J17+           TGTGTTTGTCGCCATGC                                           
JMFF021B20+           TGTGTTTGTCGCCATGC                                           
JMFS065B06+           TGTGTTTGTCGCCATGC                                           
JMFF029H08+           TGTGTTTGTCGCCATGCGAACGATGCAATGCTCACAAGTGCTGTTTTTTTTAAATGGGTT
                      ____________________________________________________________
consensus             TGTGTTTGTCGCCATGCGAACGATGCAATGCTCACAAGTGCTGTTTTTTTTAAATGGGTT
 
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JMFF029H08+           TTTGTTTTTATTGGATAATATGAAGATGTTTTTGCAAATGAATGCGTTATATATCTGCTT
                      ____________________________________________________________
consensus             TTTGTTTTTATTGGATAATATGAAGATGTTTTTGCAAATGAATGCGTTATATATCTGCTT