Contig 012905:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013D02Sequence218012905 (9)
JMFF029D01Sequence397012905 (9)ref|XP_009610844.1|6e-05PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Nicotian758012905 (9)ref|XP_006472910.1|2e-107PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Citrus sinensi
JMSF001E24Sequence374012905 (9)ref|XP_002265695.1|2e-14PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis vinifera] emb423005559 (4)
JMSF003J06Sequence314012905 (9)ref|XP_002265695.1|9e-15PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis vinifera] emb761012905 (9)ref|XP_006472910.1|5e-86PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Citrus sinensi
JMSF033L23Sequence720017879ref|XP_002265695.1|2e-13PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis vinifera] emb682012905 (9)ref|XP_006472910.1|5e-105PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Citrus sinensi
JMSF052B23Sequence663012905 (9)ref|XP_006472910.1|4e-45PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Citrus sinensi810012905 (9)ref|XP_006472910.1|4e-103PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Citrus sinensi

Alignment

This contig is upended


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rJMFF029D01- TTCTGGTTGTG
rJMSF003J06- GCATTCTGGTTGTG
                      ____________________________________________________________
consensus GCATTCTGGTTGTG
 
. : . : . : . : . : . :
rJMSF033L23- ATTCT
rJMFF029D01- CATAACAGCTTAAACTGCATGAATATATAAATTGCAGTGTACTAAGATTTCTTCAATTCT
rJMSF003J06- CATAACAGCTTAAACTGCATGAATATATAAATTGCAGTGTACTAAGATTTCTTCAATTCT
                      ____________________________________________________________
consensus CATAACAGCTTAAACTGCATGAATATATAAATTGCAGTGTACTAAGATTTCTTCAATTCT
 
. : . : . : . : . : . :
rJMSF033L23- TAGTATGTACCAAGTGAGATACCATGAATTGCCAAAACTAATTGTTACTCAAAACTGAAA
rJMFF029D01- TAGTATGTACCAAGTGAGATACCATGAATTGCCAAAACTAATTGTTACTCAAAACTGAAA
rJMSF003J06- TAGTATGTACCAAGTGAGATACCATGAATTGCCAAAACTAATTGTTACTCAAAACTGAAA
rJMSF052B23- GAATTGCCANAACTAATTGTTACTCAAAACTGAAA
                      ____________________________________________________________
consensus TAGTATGTACCAAGTGAGATACCATGAATTGCCAAAACTAATTGTTACTCAAAACTGAAA
 
. : . : . : . : . : . :
rJMSF033L23- TCTAGAGCCCAAACTCTCTTCATATGCCAAGATTATAGGAATTCCTTCTTCCTTGACTGG
rJMFF029D01- TCTAGAGCCCAAACTCTCTTCATATGCCAAGATTATAGGAATTCCTTCTTCCTTGACTGG
rJMSF003J06- TCTAGAGCCCAAACTCTCTTCATATGCCAAGATTATAGGAATTCCTTCTTCCTTGACTGG
rJMSF052B23- TCTAGAGCCCAAACTCTCTTCANATGCCAAGATTATAGGAATTCCTTCTTCCNTGACTGG
                      ____________________________________________________________
consensus TCTAGAGCCCAAACTCTCTTCATATGCCAAGATTATAGGAATTCCTTCTTCCTTGACTGG
 
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rJMSF033L23- CAATATACATTTCAGATAACCCTAAAAGATCGGGCGATCCTATTCAGATCACTGTAATGC
rJMFF029D01- CAATATACATTTCAGATAACCCTAAAAGATCGGGCGATCCTATTCAGATCACTGTAATGC
rJMSF003J06- CAATATACATTTCAGATAACCCTAAAAGATCGGGCGATCCTATTCAGATCACTGTAATGC
rJMSF052B23- CAATATACATTTCAGATAACCCTAAAAGATCGGGCGATCCTATTCAGATCACTGTAATGC
                      ____________________________________________________________
consensus CAATATACATTTCAGATAACCCTAAAAGATCGGGCGATCCTATTCAGATCACTGTAATGC
 
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rJMSF033L23- CTCTTCCATTGAAGACCATTTCCGGTTACACTGAACAAGTAGAGGCGGTTGCCAGCTGCA
rJMFF029D01- CTCTTCCATTGAAGACCATTTCCGGTTACACTGAACAAGTAGAGGCGGTTGCCAGCTGCA
rJMSF003J06- CTCTTCCATTGAAGACCATTTCCGGTTACACTGAACAAGTAGAGGCGGTTGCCAGCTGCA
rJMSF052B23- CTCTTCCATTGAAGACCATTTCCGGTTACACTGAACAAGTAGAGGCGGNTGCCAGCTGCA
                      ____________________________________________________________
consensus CTCTTCCATTGAAGACCATTTCCGGTTACACTGAACAAGTAGAGGCGGTTGCCAGCTGCA
 
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rJMSF033L23- GTTGCGGTTATCAGAACGTGAGGTGGCTCCAGTTCGAAATGGTAATATTTTCTCCCCGAA
rJMFF029D01- GTTGCGGTTATCAGAACGTGAGGTGGCTCCAGTTCGAAATGGTAATATTTTCTCCCCGAA
rJMSF003J06- GTTGCGGTTATCAGAACGTGAGGTGGCTCCAGTTCGAAATGGTAATATTTTCTCCCCGAA
rJMSF052B23- GTTGCGGTTATCAGAACGTGAGGTGGCTCCAGTTCGAAATGGTAATATTTTCTCCCCGAA
                      ____________________________________________________________
consensus GTTGCGGTTATCAGAACGTGAGGTGGCTCCAGTTCGAAATGGTAATATTTTCTCCCCGAA
 
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rJMSF033L23- TCTTCTGTTACTTCGGAGCTCAACACCTTCCCCTCGACGTTCTCTCCAATCACTTCTGGC
rJMFF029D01- TCTTCTGTTACTTCGGAGCTCAACACCTTCCCCTCGACGTTCTCTCCAATCACTTCTGGC
rJMSF003J06- TCTTCTGTTACTTCGGAGCTCAACACCTTCCCCTCGACGTTCTCTCCAATCACTTCTGGC
rJMSF052B23- TCTTCTGTTACTTCGGAGCTCAACACCTTCCCCTCGACGTTCTCTCCAATCACTTCTGGC
                      ____________________________________________________________
consensus TCTTCTGTTACTTCGGAGCTCAACACCTTCCCCTCGACGTTCTCTCCAATCACTTCTGGC
 
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rJMSF033L23- CCGAACGCATTAATCACTTTTTCCGGGGGTCCAATTTCTTCTATGGTGATATCCTCTCCA
rJMFF029D01- CCGAACGCATTAATCACTTTTTCCGGGGGTCCAATTTCTTCTATGGTGATATCCTCTCCA
rJMSF003J06- CCGAACGCATTAATCACTTTTTCC-GGGGTCCAATTTCTTCTATGGTGATATCCTCTCCA
rJMSF052B23- CCGAACGCATTAATCACTTTTTCCGGGGGTCCNATTTCTTCTATGGTGATATCCTCTCCA
JMSF052B23+ TTCTTCTATGGTGATATCCTCTCCA
                      ____________________________________________________________
consensus CCGAACGCATTAATCACTTTTTCCGGGGGTCCAATTTCTTCTATGGTGATATCCTCTCCA
 
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rJMSF033L23- AGAGTATCTGAAAATCTTTTCACAGGGGCGACGATTACAAATAGGCGTCCTTCTTTTGGG
rJMFF029D01- AGAGTATCTGAAAATCTTTTCACAGGGGCGACGATTACAAATAGGCGTCCTTCTTTTGGG
rJMSF003J06- AGAGTATCTGAAAATCTTTTCACAGGGGCGACGATTACAAATAGGCGTCCTTCTTTTGGG
rJMSF052B23- AGAGTATCTGAAAATCTTTTCACAGGGGCGACGATTACAAATAGGCGTCCTTCTTTTGGG
JMSF052B23+ AGAGTATCTGAAAATCTTTTCACAGGGGCGACGATTACAAATAGGCGTCCTTCTTTTGGG
                      ____________________________________________________________
consensus AGAGTATCTGAAAATCTTTTCACAGGGGCGACGATTACAAATAGGCGTCCTTCTTTTGGG
 
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rJMSF033L23- CTGGCAAATCTCAAGTCAATCTCTGTGCCTCCAAGATCAGCAATTGAAACTGGGACCTCA
rJMFF029D01- CTGGCAAATCTCAAGTCAATCTCTGTGCCTCCAAGATCAGCAATTGAAACTGGGACCTCA
rJMSF003J06- CTGGCAAATCTCAAGTCAATCTCTGTGCCTCCAAGATCAGCAATTGAAACTGGGACCTCA
rJMSF052B23- CTGGCAAATCTCAAGTCAATCTCTGTGCCTCCAAGATCAGCAATTGAAACTGGGACCTCA
JMSF052B23+ CTGGCAAATCTCAAGTCAATCTCTGTGCCTCCAAGATCAGCAATTGAAACTGGGACCTCA
                      ____________________________________________________________
consensus CTGGCAAATCTCAAGTCAATCTCTGTGCCTCCAAGATCAGCAATTGAAACTGGGACCTCA
 
. : . : . : . : . : . :
rJMSF033L23- TCCCATTCTTGAGGCACCGAGAAAGAGTAAGGGATAATAGGACTCCATCCAACCCCGTGC
rJMFF029D01- TCCCATTCTTGAGGCACCGAGAAAGAGTAAGGGATAATAGGACTCCATCCAACCCCGTGC
rJMSF003J06- TCCCATTCTTGAGGCACCGAGAAAGAGTAAGGGATAATAGGACTCCATCCAACCCCGTGC
rJMSF052B23- TCCCATTCTTGAGGCACCGAGAAAGAGTAAGGGATAATAGGACTCCATCCAACCCCGTGC
JMSF052B23+ TCCCATTCTTGAGGCACCGAGAAAGAGTAAGGGATAATAGGACTCCATCCAACCCCGTGC
                      ____________________________________________________________
consensus TCCCATTCTTGAGGCACCGAGAAAGAGTAAGGGATAATAGGACTCCATCCAACCCCGTGC
 
. : . : . : . : . : . :
rJMSF033L23- CCTCCAGACTTATCATCCGGTCTACGGTATGTCCTCCAACCT
rJMFF029D01- CCTCCAGACTTATCATCCGGTCTACGGTATGTCCTCCAACCT
rJMSF003J06- CCTCCAGACTTATCATCCGGTCTACGGTATGTCCTCCAA----CCTTGTTCATCTGGNTC
rJMSF052B23- CCTCCAGACTTATCATCCGGTCTACGGTATGTCCTCCAACCTGCCTTGTTCATCTGGTTC
JMSF001E24+ CTTGTTCATCTGGTTC
JMSF003J06+ TTGTTCATCTGGTTC
JMSF052B23+ CCTCCAGACTTATCATCCGGTCTACGGTATGTCCTCCAACCTGCCTTGTTCATCTGGTTC
                      ____________________________________________________________
consensus CCTCCAGACTTATCATCCGGTCTACGGTATGTCCTCCAACCTGCCTTGTTCATCTGGTTC
 
. : . : . : . : . : . :
rJMSF003J06- AGAGAGGCCAGGAACCCTCCCTGCTAAAAG
rJMSF052B23- AGAGAGGCCAGGAACCCTCCCTGCTAAAAGCCCCTGTTTCACAACAGCTAATCCCTCTCC
JMSF001E24+ AGAGAGGCCAGGAACCCTCCCTGCTAAAAGCCCCTGTTTCACAACAGCTAATCCCTCTCC
JMSF003J06+ AGAGAGGCCAGGAACCCTCCCTGCTAAAAGCCCCTGTTTCACAACAGCTAATCCCTCTCC
JMSF052B23+ AGAGAGGCCAGGAACCCTCCCTGCTAAAAGCCCCTGTTTCACAACAGCTAATCCCTCTCC
JMFF029D01+ CTAAAAGCCCCTGTTTCACAACAGCTAATCCCTCTCC
                      ____________________________________________________________
consensus AGAGAGGCCAGGAACCCTCCCTGCTAAAAGCCCCTGTTTCACAACAGCTAATCCCTCTCC
 
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rJMSF052B23- TGAAAACCCCAACACCATTGAAGCTCCAGAAATCATAGCAAACCTTCTATTAACCATGCC
JMSF001E24+ TGAAAACCCCAACACCATTGAAGCTCCAGAAATCATAGCAAACCTTCTATTAACCATGCC
JMSF003J06+ TGAAAACCCCAACACCATTGAAGCTCCAGAAATCATAGCAAACCTTCTATTAACCATGCC
JMFF013D02+ CCATGCC
JMSF052B23+ TGAAAACCCCAACACCATTGAAGCTCCAGAAATCATAGCAAACCTTCTATTAACCATGCC
JMFF029D01+ TGAAAACCCCAACACCATTGAAGCTCCAGAAATCATAGCAAACCTTCTATTAACCATGCC
                      ____________________________________________________________
consensus TGAAAACCCCAACACCATTGAAGCTCCAGAAATCATAGCAAACCTTCTATTAACCATGCC
 
. : . : . : . : . : . :
rJMSF052B23- ACACTTCNTCTCGGATTCTTCGTCACTCTTAGTGCCCTCACT
JMSF001E24+ ACACTTCTTCTCGGATTCTTCGTCACTCTTAGTGCCCTCACTGGAGCATGCAGAGGCTCT
JMSF003J06+ ACACTTCTTCTCGGATTCTTCGTCACTCTTAGTGCCCTCACTGGAGCATGCAGAGGCTCT
JMFF013D02+ NCACTTCTTCTCGGATTNTTCGTCACTCTTAGTGCCCTCACTGGAGCATGCAGAGGCTCT
JMSF052B23+ ACACTTCTTCTCGGATTCTTCGTCACTCTTAGTGCCCTCACTGGAGCATGCAGAGGCTCT
JMFF029D01+ ACACTTCTTCTCGGATTCTTCGTCACTCTTAGTGCCCTCACTGGAGCATGCAGAGGCTCT
                      ____________________________________________________________
consensus ACACTTCTTCTCGGATTCTTCGTCACTCTTAGTGCCCTCACTGGAGCATGCAGAGGCTCT
 
. : . : . : . : . : . :
JMSF001E24+ TGCCCTGAAACGCCGTCGTTCTGATGCGCACATCTTCCAACAAAGGCAAGGGCTTGTGTA
JMSF003J06+ TGCCCTGAAACGCCGTCGTTCTGATGCGCACATCTTCCAACAAAGGCAAGGGCTTGTGTA
JMFF013D02+ TGCCNTGAAACGCCGTCGTTNTGATGCGCACATCTTCCAACAAAGGCAAGGGCTTGNGTA
JMSF052B23+ TGCCCTGAAACGCCGTCGTTCTGATGCGCACATCTTCCAACAAAGGCAAGGGCTTGTGTA
JMFF029D01+ TGCCCTGAAACGCCGTCGTTCTGATGCGCACATCTTCCAACAAAGGCAAGGGCTTGTGTA
                      ____________________________________________________________
consensus TGCCCTGAAACGCCGTCGTTCTGATGCGCACATCTTCCAACAAAGGCAAGGGCTTGTGTA
 
. : . : . : . : . : . :
JMSF001E24+ TACAATTGTGCCCATTTTAATCCTCCCAACAATTTTGCAGAGAGGAGAGTGAGTGTTCAA
JMSF003J06+ TACAATTGTGCCCATTTTAATCCTCCCAACAATTTTGCAGAGAGGAGAGTGAGTGTTC
JMFF013D02+ TACAATTGTGCCCATTTTAATCCTCCCAACAATTTTGCAGAGAGGAGAGTGAGTGTTCAA
JMSF052B23+ TACAATTGTGCCCATTTTAATCCTCCCAACAATTTTGCAGAGAGGAGAGTGAGTGTTCAA
JMFF029D01+ TACAATTGTGCCCATTTTAATCCTCCCAACAATTTTGCAGAGAGGAGAGTGAGTGTTCAA
                      ____________________________________________________________
consensus TACAATTGTGCCCATTTTAATCCTCCCAACAATTTTGCAGAGAGGAGAGTGAGTGTTCAA
 
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JMSF001E24+ TTAGGTTTGGTTTTTGAGCCCTTCTTCTTCTGGAATGGGCAAGAGGATCTAGAAGCT
JMFF013D02+ TTAGGTTTGGTTTTTGAGCCCTTCTTCTT
JMSF052B23+ TTAGGTTTGGTTTTTGAGCCCTTCTTCTTCTGGAATGGGCAAGAGGATCTAGAAGCTAAG
JMFF029D01+ TTAGGTTTGGTTTTTGAGCCCTTCTTCTTCTGGAATGGGCAAGAGGATCTAGAAGCTAAG
                      ____________________________________________________________
consensus TTAGGTTTGGTTTTTGAGCCCTTCTTCTTCTGGAATGGGCAAGAGGATCTAGAAGCTAAG
 
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JMSF052B23+ CTGCGAAATCTGTGTGGTGGATATTTAATAGGTTTT
JMFF029D01+ CTGCGAAATCTGTGTGGTGGATATTTAATAGGTTTTGTTTATTTTGGGAATTTTCTTCAT
                      ____________________________________________________________
consensus CTGCGAAATCTGTGTGGTGGATATTTAATAGGTTTTGTTTATTTTGGGAATTTTCTTCAT