Contig 012905:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF013D02Sequence218012905 (9)
JMFF029D01Sequence397012905 (9)ref|XP_009610844.1|6e-05PREDICTED: psbP domain-containing protein 4, chloroplastic isoform X1 [Nicotian758012905 (9)ref|XP_006472910.1|2e-107PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Citrus sinensi
JMSF001E24Sequence374012905 (9)ref|XP_002265695.1|2e-14PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis vinifera] emb423005559 (4)
JMSF003J06Sequence314012905 (9)ref|XP_002265695.1|9e-15PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis vinifera] emb761012905 (9)ref|XP_006472910.1|5e-86PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Citrus sinensi
JMSF033L23Sequence720017879ref|XP_002265695.1|2e-13PREDICTED: psbP domain-containing protein 4, chloroplastic [Vitis vinifera] emb682012905 (9)ref|XP_006472910.1|5e-105PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Citrus sinensi
JMSF052B23Sequence663012905 (9)ref|XP_006472910.1|4e-45PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Citrus sinensi810012905 (9)ref|XP_006472910.1|4e-103PREDICTED: psbP domain-containing protein 4, chloroplastic-like [Citrus sinensi

Alignment

This contig is upended


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rJMFF029D01-                                                           TTCTGGTTGTG
rJMSF003J06-                                                        GCATTCTGGTTGTG
                      ____________________________________________________________
consensus                                                           GCATTCTGGTTGTG
 
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rJMSF033L23-                                                                 ATTCT
rJMFF029D01-          CATAACAGCTTAAACTGCATGAATATATAAATTGCAGTGTACTAAGATTTCTTCAATTCT
rJMSF003J06-          CATAACAGCTTAAACTGCATGAATATATAAATTGCAGTGTACTAAGATTTCTTCAATTCT
                      ____________________________________________________________
consensus             CATAACAGCTTAAACTGCATGAATATATAAATTGCAGTGTACTAAGATTTCTTCAATTCT
 
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rJMSF033L23-          TAGTATGTACCAAGTGAGATACCATGAATTGCCAAAACTAATTGTTACTCAAAACTGAAA
rJMFF029D01-          TAGTATGTACCAAGTGAGATACCATGAATTGCCAAAACTAATTGTTACTCAAAACTGAAA
rJMSF003J06-          TAGTATGTACCAAGTGAGATACCATGAATTGCCAAAACTAATTGTTACTCAAAACTGAAA
rJMSF052B23-                                   GAATTGCCANAACTAATTGTTACTCAAAACTGAAA
                      ____________________________________________________________
consensus             TAGTATGTACCAAGTGAGATACCATGAATTGCCAAAACTAATTGTTACTCAAAACTGAAA
 
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rJMSF033L23-          TCTAGAGCCCAAACTCTCTTCATATGCCAAGATTATAGGAATTCCTTCTTCCTTGACTGG
rJMFF029D01-          TCTAGAGCCCAAACTCTCTTCATATGCCAAGATTATAGGAATTCCTTCTTCCTTGACTGG
rJMSF003J06-          TCTAGAGCCCAAACTCTCTTCATATGCCAAGATTATAGGAATTCCTTCTTCCTTGACTGG
rJMSF052B23-          TCTAGAGCCCAAACTCTCTTCANATGCCAAGATTATAGGAATTCCTTCTTCCNTGACTGG
                      ____________________________________________________________
consensus             TCTAGAGCCCAAACTCTCTTCATATGCCAAGATTATAGGAATTCCTTCTTCCTTGACTGG
 
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rJMSF033L23-          CAATATACATTTCAGATAACCCTAAAAGATCGGGCGATCCTATTCAGATCACTGTAATGC
rJMFF029D01-          CAATATACATTTCAGATAACCCTAAAAGATCGGGCGATCCTATTCAGATCACTGTAATGC
rJMSF003J06-          CAATATACATTTCAGATAACCCTAAAAGATCGGGCGATCCTATTCAGATCACTGTAATGC
rJMSF052B23-          CAATATACATTTCAGATAACCCTAAAAGATCGGGCGATCCTATTCAGATCACTGTAATGC
                      ____________________________________________________________
consensus             CAATATACATTTCAGATAACCCTAAAAGATCGGGCGATCCTATTCAGATCACTGTAATGC
 
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rJMSF033L23-          CTCTTCCATTGAAGACCATTTCCGGTTACACTGAACAAGTAGAGGCGGTTGCCAGCTGCA
rJMFF029D01-          CTCTTCCATTGAAGACCATTTCCGGTTACACTGAACAAGTAGAGGCGGTTGCCAGCTGCA
rJMSF003J06-          CTCTTCCATTGAAGACCATTTCCGGTTACACTGAACAAGTAGAGGCGGTTGCCAGCTGCA
rJMSF052B23-          CTCTTCCATTGAAGACCATTTCCGGTTACACTGAACAAGTAGAGGCGGNTGCCAGCTGCA
                      ____________________________________________________________
consensus             CTCTTCCATTGAAGACCATTTCCGGTTACACTGAACAAGTAGAGGCGGTTGCCAGCTGCA
 
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rJMSF033L23-          GTTGCGGTTATCAGAACGTGAGGTGGCTCCAGTTCGAAATGGTAATATTTTCTCCCCGAA
rJMFF029D01-          GTTGCGGTTATCAGAACGTGAGGTGGCTCCAGTTCGAAATGGTAATATTTTCTCCCCGAA
rJMSF003J06-          GTTGCGGTTATCAGAACGTGAGGTGGCTCCAGTTCGAAATGGTAATATTTTCTCCCCGAA
rJMSF052B23-          GTTGCGGTTATCAGAACGTGAGGTGGCTCCAGTTCGAAATGGTAATATTTTCTCCCCGAA
                      ____________________________________________________________
consensus             GTTGCGGTTATCAGAACGTGAGGTGGCTCCAGTTCGAAATGGTAATATTTTCTCCCCGAA
 
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rJMSF033L23-          TCTTCTGTTACTTCGGAGCTCAACACCTTCCCCTCGACGTTCTCTCCAATCACTTCTGGC
rJMFF029D01-          TCTTCTGTTACTTCGGAGCTCAACACCTTCCCCTCGACGTTCTCTCCAATCACTTCTGGC
rJMSF003J06-          TCTTCTGTTACTTCGGAGCTCAACACCTTCCCCTCGACGTTCTCTCCAATCACTTCTGGC
rJMSF052B23-          TCTTCTGTTACTTCGGAGCTCAACACCTTCCCCTCGACGTTCTCTCCAATCACTTCTGGC
                      ____________________________________________________________
consensus             TCTTCTGTTACTTCGGAGCTCAACACCTTCCCCTCGACGTTCTCTCCAATCACTTCTGGC
 
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rJMSF033L23-          CCGAACGCATTAATCACTTTTTCCGGGGGTCCAATTTCTTCTATGGTGATATCCTCTCCA
rJMFF029D01-          CCGAACGCATTAATCACTTTTTCCGGGGGTCCAATTTCTTCTATGGTGATATCCTCTCCA
rJMSF003J06-          CCGAACGCATTAATCACTTTTTCC-GGGGTCCAATTTCTTCTATGGTGATATCCTCTCCA
rJMSF052B23-          CCGAACGCATTAATCACTTTTTCCGGGGGTCCNATTTCTTCTATGGTGATATCCTCTCCA
JMSF052B23+                                              TTCTTCTATGGTGATATCCTCTCCA
                      ____________________________________________________________
consensus             CCGAACGCATTAATCACTTTTTCCGGGGGTCCAATTTCTTCTATGGTGATATCCTCTCCA
 
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rJMSF033L23-          AGAGTATCTGAAAATCTTTTCACAGGGGCGACGATTACAAATAGGCGTCCTTCTTTTGGG
rJMFF029D01-          AGAGTATCTGAAAATCTTTTCACAGGGGCGACGATTACAAATAGGCGTCCTTCTTTTGGG
rJMSF003J06-          AGAGTATCTGAAAATCTTTTCACAGGGGCGACGATTACAAATAGGCGTCCTTCTTTTGGG
rJMSF052B23-          AGAGTATCTGAAAATCTTTTCACAGGGGCGACGATTACAAATAGGCGTCCTTCTTTTGGG
JMSF052B23+           AGAGTATCTGAAAATCTTTTCACAGGGGCGACGATTACAAATAGGCGTCCTTCTTTTGGG
                      ____________________________________________________________
consensus             AGAGTATCTGAAAATCTTTTCACAGGGGCGACGATTACAAATAGGCGTCCTTCTTTTGGG
 
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rJMSF033L23-          CTGGCAAATCTCAAGTCAATCTCTGTGCCTCCAAGATCAGCAATTGAAACTGGGACCTCA
rJMFF029D01-          CTGGCAAATCTCAAGTCAATCTCTGTGCCTCCAAGATCAGCAATTGAAACTGGGACCTCA
rJMSF003J06-          CTGGCAAATCTCAAGTCAATCTCTGTGCCTCCAAGATCAGCAATTGAAACTGGGACCTCA
rJMSF052B23-          CTGGCAAATCTCAAGTCAATCTCTGTGCCTCCAAGATCAGCAATTGAAACTGGGACCTCA
JMSF052B23+           CTGGCAAATCTCAAGTCAATCTCTGTGCCTCCAAGATCAGCAATTGAAACTGGGACCTCA
                      ____________________________________________________________
consensus             CTGGCAAATCTCAAGTCAATCTCTGTGCCTCCAAGATCAGCAATTGAAACTGGGACCTCA
 
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rJMSF033L23-          TCCCATTCTTGAGGCACCGAGAAAGAGTAAGGGATAATAGGACTCCATCCAACCCCGTGC
rJMFF029D01-          TCCCATTCTTGAGGCACCGAGAAAGAGTAAGGGATAATAGGACTCCATCCAACCCCGTGC
rJMSF003J06-          TCCCATTCTTGAGGCACCGAGAAAGAGTAAGGGATAATAGGACTCCATCCAACCCCGTGC
rJMSF052B23-          TCCCATTCTTGAGGCACCGAGAAAGAGTAAGGGATAATAGGACTCCATCCAACCCCGTGC
JMSF052B23+           TCCCATTCTTGAGGCACCGAGAAAGAGTAAGGGATAATAGGACTCCATCCAACCCCGTGC
                      ____________________________________________________________
consensus             TCCCATTCTTGAGGCACCGAGAAAGAGTAAGGGATAATAGGACTCCATCCAACCCCGTGC
 
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rJMSF033L23-          CCTCCAGACTTATCATCCGGTCTACGGTATGTCCTCCAACCT                  
rJMFF029D01-          CCTCCAGACTTATCATCCGGTCTACGGTATGTCCTCCAACCT                  
rJMSF003J06-          CCTCCAGACTTATCATCCGGTCTACGGTATGTCCTCCAA----CCTTGTTCATCTGGNTC
rJMSF052B23-          CCTCCAGACTTATCATCCGGTCTACGGTATGTCCTCCAACCTGCCTTGTTCATCTGGTTC
JMSF001E24+                                                       CTTGTTCATCTGGTTC
JMSF003J06+                                                        TTGTTCATCTGGTTC
JMSF052B23+           CCTCCAGACTTATCATCCGGTCTACGGTATGTCCTCCAACCTGCCTTGTTCATCTGGTTC
                      ____________________________________________________________
consensus             CCTCCAGACTTATCATCCGGTCTACGGTATGTCCTCCAACCTGCCTTGTTCATCTGGTTC
 
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rJMSF003J06-          AGAGAGGCCAGGAACCCTCCCTGCTAAAAG                              
rJMSF052B23-          AGAGAGGCCAGGAACCCTCCCTGCTAAAAGCCCCTGTTTCACAACAGCTAATCCCTCTCC
JMSF001E24+           AGAGAGGCCAGGAACCCTCCCTGCTAAAAGCCCCTGTTTCACAACAGCTAATCCCTCTCC
JMSF003J06+           AGAGAGGCCAGGAACCCTCCCTGCTAAAAGCCCCTGTTTCACAACAGCTAATCCCTCTCC
JMSF052B23+           AGAGAGGCCAGGAACCCTCCCTGCTAAAAGCCCCTGTTTCACAACAGCTAATCCCTCTCC
JMFF029D01+                                  CTAAAAGCCCCTGTTTCACAACAGCTAATCCCTCTCC
                      ____________________________________________________________
consensus             AGAGAGGCCAGGAACCCTCCCTGCTAAAAGCCCCTGTTTCACAACAGCTAATCCCTCTCC
 
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rJMSF052B23-          TGAAAACCCCAACACCATTGAAGCTCCAGAAATCATAGCAAACCTTCTATTAACCATGCC
JMSF001E24+           TGAAAACCCCAACACCATTGAAGCTCCAGAAATCATAGCAAACCTTCTATTAACCATGCC
JMSF003J06+           TGAAAACCCCAACACCATTGAAGCTCCAGAAATCATAGCAAACCTTCTATTAACCATGCC
JMFF013D02+                                                                CCATGCC
JMSF052B23+           TGAAAACCCCAACACCATTGAAGCTCCAGAAATCATAGCAAACCTTCTATTAACCATGCC
JMFF029D01+           TGAAAACCCCAACACCATTGAAGCTCCAGAAATCATAGCAAACCTTCTATTAACCATGCC
                      ____________________________________________________________
consensus             TGAAAACCCCAACACCATTGAAGCTCCAGAAATCATAGCAAACCTTCTATTAACCATGCC
 
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rJMSF052B23-          ACACTTCNTCTCGGATTCTTCGTCACTCTTAGTGCCCTCACT                  
JMSF001E24+           ACACTTCTTCTCGGATTCTTCGTCACTCTTAGTGCCCTCACTGGAGCATGCAGAGGCTCT
JMSF003J06+           ACACTTCTTCTCGGATTCTTCGTCACTCTTAGTGCCCTCACTGGAGCATGCAGAGGCTCT
JMFF013D02+           NCACTTCTTCTCGGATTNTTCGTCACTCTTAGTGCCCTCACTGGAGCATGCAGAGGCTCT
JMSF052B23+           ACACTTCTTCTCGGATTCTTCGTCACTCTTAGTGCCCTCACTGGAGCATGCAGAGGCTCT
JMFF029D01+           ACACTTCTTCTCGGATTCTTCGTCACTCTTAGTGCCCTCACTGGAGCATGCAGAGGCTCT
                      ____________________________________________________________
consensus             ACACTTCTTCTCGGATTCTTCGTCACTCTTAGTGCCCTCACTGGAGCATGCAGAGGCTCT
 
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JMSF001E24+           TGCCCTGAAACGCCGTCGTTCTGATGCGCACATCTTCCAACAAAGGCAAGGGCTTGTGTA
JMSF003J06+           TGCCCTGAAACGCCGTCGTTCTGATGCGCACATCTTCCAACAAAGGCAAGGGCTTGTGTA
JMFF013D02+           TGCCNTGAAACGCCGTCGTTNTGATGCGCACATCTTCCAACAAAGGCAAGGGCTTGNGTA
JMSF052B23+           TGCCCTGAAACGCCGTCGTTCTGATGCGCACATCTTCCAACAAAGGCAAGGGCTTGTGTA
JMFF029D01+           TGCCCTGAAACGCCGTCGTTCTGATGCGCACATCTTCCAACAAAGGCAAGGGCTTGTGTA
                      ____________________________________________________________
consensus             TGCCCTGAAACGCCGTCGTTCTGATGCGCACATCTTCCAACAAAGGCAAGGGCTTGTGTA
 
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JMSF001E24+           TACAATTGTGCCCATTTTAATCCTCCCAACAATTTTGCAGAGAGGAGAGTGAGTGTTCAA
JMSF003J06+           TACAATTGTGCCCATTTTAATCCTCCCAACAATTTTGCAGAGAGGAGAGTGAGTGTTC  
JMFF013D02+           TACAATTGTGCCCATTTTAATCCTCCCAACAATTTTGCAGAGAGGAGAGTGAGTGTTCAA
JMSF052B23+           TACAATTGTGCCCATTTTAATCCTCCCAACAATTTTGCAGAGAGGAGAGTGAGTGTTCAA
JMFF029D01+           TACAATTGTGCCCATTTTAATCCTCCCAACAATTTTGCAGAGAGGAGAGTGAGTGTTCAA
                      ____________________________________________________________
consensus             TACAATTGTGCCCATTTTAATCCTCCCAACAATTTTGCAGAGAGGAGAGTGAGTGTTCAA
 
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JMSF001E24+           TTAGGTTTGGTTTTTGAGCCCTTCTTCTTCTGGAATGGGCAAGAGGATCTAGAAGCT   
JMFF013D02+           TTAGGTTTGGTTTTTGAGCCCTTCTTCTT                               
JMSF052B23+           TTAGGTTTGGTTTTTGAGCCCTTCTTCTTCTGGAATGGGCAAGAGGATCTAGAAGCTAAG
JMFF029D01+           TTAGGTTTGGTTTTTGAGCCCTTCTTCTTCTGGAATGGGCAAGAGGATCTAGAAGCTAAG
                      ____________________________________________________________
consensus             TTAGGTTTGGTTTTTGAGCCCTTCTTCTTCTGGAATGGGCAAGAGGATCTAGAAGCTAAG
 
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JMSF052B23+           CTGCGAAATCTGTGTGGTGGATATTTAATAGGTTTT                        
JMFF029D01+           CTGCGAAATCTGTGTGGTGGATATTTAATAGGTTTTGTTTATTTTGGGAATTTTCTTCAT
                      ____________________________________________________________
consensus             CTGCGAAATCTGTGTGGTGGATATTTAATAGGTTTTGTTTATTTTGGGAATTTTCTTCAT