Contig 012903:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028J03Sequence548012903 (2)ref|XP_009784240.1|7e-18PREDICTED: FACT complex subunit SPT16-like [Nicotiana sylvestris] ref|XP_0097842702019114ref|XP_009629185.1|7e-20PREDICTED: FACT complex subunit SPT16-like [Nicotiana tomentosiformis]
JMFS164G08Sequence593012903 (2)ref|XP_009784240.1|4e-42PREDICTED: FACT complex subunit SPT16-like [Nicotiana sylvestris] ref|XP_0097842

Alignment

This contig is upended


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JMFS164G08+                      CCAAAAACCATAATCGTTTCTGGGAACTCATACCCAAGCAACCAAATGT
                      ____________________________________________________________
consensus                        CCAAAAACCATAATCGTTTCTGGGAACTCATACCCAAGCAACCAAATGT
 
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JMFS164G08+           TCATGGCTGAGGATTTCAAGTACCTCAAATCCTCAGAAGGCGGAGGTGTTGCTATGGCAA
JMFF028J03+                                                               TATGGCAA
                      ____________________________________________________________
consensus             TCATGGCTGAGGATTTCAAGTACCTCAAATCCTCAGAAGGCGGAGGTGTTGCTATGGCAA
 
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JMFS164G08+           GAACATCAGAAGAACCCCAAATATCATCTCTATGTTCCTTCCAATGTGCATATAGGGCCT
JMFF028J03+           GAACATCAGAAGAACCCCAAATATCATCTCTATGTTCCTTCCAATGTGCATATAGGGCCT
                      ____________________________________________________________
consensus             GAACATCAGAAGAACCCCAAATATCATCTCTATGTTCCTTCCAATGTGCATATAGGGCCT
 
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JMFS164G08+           GCAGTCTCCTGCTAAAGGTATTCAAATCAATTTTATAGGCACCTCCAGCAGATGCATGCC
JMFF028J03+           GCAGTCTCCTGCTAAAGGTATTCAAATCAATTTTATAGGCACCTCCAGCAGATGCATGCC
                      ____________________________________________________________
consensus             GCAGTCTCCTGCTAAAGGTATTCAAATCAATTTTATAGGCACCTCCAGCAGATGCATGCC
 
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JMFS164G08+           CATTAGCAGGACCATTTCCATTCCACTGTTCTGCCATGACTAATATTTAATTCAACTAAT
JMFF028J03+           CATTAGCAGGACCATTTCCATTCCACTGTTCTGCCATGANTAATATTTAATTCAACTAAT
                      ____________________________________________________________
consensus             CATTAGCAGGACCATTTCCATTCCACTGTTCTGCCATGACTAATATTTAATTCAACTAAT
 
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JMFS164G08+           CAGTTGCTCCCCGACTGAAACCCCGATATCAAGAAGCCAATTGAGGTCAAAGCTCGATAT
JMFF028J03+           CAGTTGCTCCCCGACTGAAACCCCGATATCAAGAAGCCAATTGAGGTCAAAGCTCGATAT
                      ____________________________________________________________
consensus             CAGTTGCTCCCCGACTGAAACCCCGATATCAAGAAGCCAATTGAGGTCAAAGCTCGATAT
 
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JMFS164G08+           GGGCTCCAGTCCTCACTTCCTCGCGGCGGTCTATGTCGGTTAGGGTTTCGAGAGAGTTCG
JMFF028J03+           GGGCTCCAGTCCTCACTTCCTCGCGGCGGTCTATGTCGGTTAGGGTTTCGAGAGAGTTCG
                      ____________________________________________________________
consensus             GGGCTCCAGTCCTCACTTCCTCGCGGCGGTCTATGTCGGTTAGGGTTTCGAGAGAGTTCG
 
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JMFS164G08+           GAAGAACAGAAAACGTTCCCAAGCAAGTCTTTGGTATCGATCAACCCACATATATCTCCA
JMFF028J03+           GAAGAACAGAAAACGTTCCCAAGCAAGTCTCTGGTATCGATCAACCCACATATATCTCCA
                      ____________________________________________________________
consensus             GAAGAACAGAAAACGTTCCCAAGCAAGTCTTTGGTATCGATCAACCCACATATATCTCCA
 
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JMFS164G08+           GTGAATTTACCAGCTTGGGAGGAAACACGGAAGTAGAGCTGCGCAGAACAATCGAAGAAG
JMFF028J03+           GTGAATTTACCAGCTTGGGAGGAAACACGGAAGTAGAGCTGCGCAGAACAATCGAAGAAG
                      ____________________________________________________________
consensus             GTGAATTTACCAGCTTGGGAGGAAACACGGAAGTAGAGCTGCGCAGAACAATCGAAGAAG
 
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JMFS164G08+           CTCTTCAACAATCGAAGAACAAAAAGGAGAAATATGCTAAGAAAGAGTAATCCAGAGAGA
JMFF028J03+           CTCTTCAACAATCGAAGAACAAAAAGGAGAAATATGCTAAGAAAGAGTAATCCAGAGAGA
                      ____________________________________________________________
consensus             CTCTTCAACAATCGAAGAACAAAAAGGAGAAATATGCTAAGAAAGAGTAATCCAGAGAGA
 
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JMFS164G08+           GAGA                                                        
JMFF028J03+           GAGAGAGAGAAGCAGAGAGCGCCTCTGCGGTGAGAGAATGGGAGCGAATAAATATAATTT
                      ____________________________________________________________
consensus             GAGAGAGAGAAGCAGAGAGCGCCTCTGCGGTGAGAGAATGGGAGCGAATAAATATAATTT