Contig 012899:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027J18Sequence520012899 (3)ref|XP_009630854.1|7e-29PREDICTED: ran-binding protein 10 isoform X2 [Nicotiana tomentosiformis]576010009 (3)ref|XP_009769202.1|4e-38PREDICTED: ran-binding protein 10 [Nicotiana sylvestris]
JMSF031B02Sequence621012899 (3)ref|XP_009630854.1|7e-68PREDICTED: ran-binding protein 10 isoform X2 [Nicotiana tomentosiformis]676010009 (3)ref|XP_009769202.1|1e-51PREDICTED: ran-binding protein 10 [Nicotiana sylvestris]
JMSF032F01Sequence696012899 (3)ref|XP_009630854.1|4e-69PREDICTED: ran-binding protein 10 isoform X2 [Nicotiana tomentosiformis]704010009 (3)ref|XP_009769202.1|3e-60PREDICTED: ran-binding protein 10 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF031B02+                    GNNGCATAATGATGCCTCCACCAACAGTATCACNTGTNGTATAAGTTGGAC
JMSF032F01+                             TGATGCCTCCACCAACAGTATCACCTGTTGTATAAGTTGGAC
                      ____________________________________________________________
consensus                      GNNGCATAATGATGCCTCCACCAACAGTATCACCTGTTGTATAAGTTGGAC
 
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JMSF031B02+           CAAATACCTCCCCCTTTCCATGTCCACGATAAAGCAAGCCATCATCACCATGATACCCAT
JMSF032F01+           CAAATACCTCCCCCTTTCCATGTCCACGATAAAGCAAGCCATCATCACCATGATACCCAT
                      ____________________________________________________________
consensus             CAAATACCTCCCCCTTTCCATGTCCACGATAAAGCAAGCCATCATCACCATGATACCCAT
 
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JMSF031B02+           AACTGTTTGCTTCCCAGCCCGGTTGGCGGCACATTTTGAAGCCGGAAGTGGTGAAACCGA
JMSF032F01+           AACTGTTTGCTTCCCAGCCCGGTTGGCGGCACATTTTGAAGCCGGAAGTGGTGAAACCGA
                      ____________________________________________________________
consensus             AACTGTTTGCTTCCCAGCCCGGTTGGCGGCACATTTTGAAGCCGGAAGTGGTGAAACCGA
 
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JMSF031B02+           TGGCAATCTGACCCTTGGCTCCAGCATTCTTGACATAGATCTCGAAATAGTAAACGAGGC
JMSF032F01+           TGGCAATCTGACCCTTGGCTCCAGCATTCTTGACATAGATCTCGAAATAGTAAACGAGGC
JMFF027J18+                               CCAGCATTCTTGACATAGATCTCGAAATAGTAAACGAGGC
                      ____________________________________________________________
consensus             TGGCAATCTGACCCTTGGCTCCAGCATTCTTGACATAGATCTCGAAATAGTAAACGAGGC
 
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JMSF031B02+           GCTTGGAAGGGGCGGGCCGATTGGCCTGGACGACGCCGACATCGTGGCCGTGGAGGTTCA
JMSF032F01+           GCTTGGAAGGGGCGGGCCGATTGGCCTGGACGACGCCGACATCGTGGCCGTGGAGGTTCA
JMFF027J18+           GCTTGGAAGGGGCGGGCCGATTGGCCTGGACGACGCCGACATCGTGGCCGTGGAGGTTCA
                      ____________________________________________________________
consensus             GCTTGGAAGGGGCGGGCCGATTGGCCTGGACGACGCCGACATCGTGGCCGTGGAGGTTCA
 
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JMSF031B02+           CGTTCGGGTACTGAACCGAGAGCTTGTCGGGCCCGACGACGGAGAACCCGCCGGAGCTGT
JMSF032F01+           CGTTCGGGTACTGAACCGAGAGCTTGTCGGGCCCGACGACGGAGAACCCGCCGGAGCTGT
JMFF027J18+           CGTTCGGGTACTGAACCGAGAGCTTGTCGGGCCCGACGACGGAGAACCCGCCGGAGCTGT
                      ____________________________________________________________
consensus             CGTTCGGGTACTGAACCGAGAGCTTGTCGGGCCCGACGACGGAGAACCCGCCGGAGCTGT
 
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JMSF031B02+           TGAGCGTGTCGAGCTCCGTCGGCGGCTCCTCCCTTTCCTCCTCATCACCCTCCACTACAT
JMSF032F01+           TGAGCGTGTCGAGCTCCGTCGGCGGCTCCTCCCTTTCCTCCTCATCACCCTCCACTACAT
JMFF027J18+           TGAGCGTGTCGAGCTCCGTCGGCGGCTCCTCCCTTTCCTCCTCATCACCCTCCACTACAT
                      ____________________________________________________________
consensus             TGAGCGTGTCGAGCTCCGTCGGCGGCTCCTCCCTTTCCTCCTCATCACCCTCCACTACAT
 
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JMSF031B02+           CCGAGGACTGCACTGCTTCCATGGCTTCCCCGGCGGATTCGAATCTGGCGGCGGCGGCTT
JMSF032F01+           CCGAGGACTGCACTGCTTCCATGGCTTCCCCGGCGGATTCGAATCTGGCGGCGGCGGCTT
JMFF027J18+           CCGAGGACTGCACTGCTTCCATGGCTTCCCCGGCGGATTCGAATCTGGCGGCGGCGGCTT
                      ____________________________________________________________
consensus             CCGAGGACTGCACTGCTTCCATGGCTTCCCCGGCGGATTCGAATCTGGCGGCGGCGGCTT
 
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JMSF031B02+           TGGAGTTGAGCCGCCAGAGTTCTAGGAAGTAGGAGCCGATCAATTCTTGATTCTGGGAGC
JMSF032F01+           TGGAGTTGAGCCGCCAGAGTTCTAGGAAGTAGGAGCCGATCAATTCTTGATTCTGGGAGC
JMFF027J18+           TGGAGTTGAGCCGCCAGAGTTCTAGGAAGTAGGAGCCGATCAATTCTTGATTCTGGGAGC
                      ____________________________________________________________
consensus             TGGAGTTGAGCCGCCAGAGTTCTAGGAAGTAGGAGCCGATCAATTCTTGATTCTGGGAGC
 
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JMSF031B02+           AATTAATGTCCTGAGCCATTACAGAGAGCTATGAGAGCATAAAATCAGATTTGAACCCTA
JMSF032F01+           AATTAATGTCCTGAGCCATTACAGAGAGCTATGAGAGCATAAAATCAGATTTGAACCCTA
JMFF027J18+           AATTAATGTCCTGAGCCATTACAGAGAGCTATGAGAGCATAAAATCAGATTTGAACCCTA
                      ____________________________________________________________
consensus             AATTAATGTCCTGAGCCATTACAGAGAGCTATGAGAGCATAAAATCAGATTTGAACCCTA
 
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JMSF031B02+           GGAAACGAGGCGGAAGAGATGATGATAGC                               
JMSF032F01+           GGAAACGAGGCGGAAGAGATGATGATAGCAAGCTTGGGAGACGCAGTGAAGAGCGCTTAT
JMFF027J18+           GGAAACGAGGCGGAAGAGATGATGATAGCAAGCTTGGGAGACGCAGTGAAGAGCGCTTAT
                      ____________________________________________________________
consensus             GGAAACGAGGCGGAAGAGATGATGATAGCAAGCTTGGGAGACGCAGTGAAGAGCGCTTAT
 
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JMSF032F01+           CGGAAAAGCAATGGAGGCTTTCTTCGACGAAGGGCTAAAGGTCAGGCCGC          
JMFF027J18+           CGGAAAAGCAATGGAGGCTTTCTTCGACGAAGGGCTAAAGGTCAGGCCGCAGCCAATTCC
                      ____________________________________________________________
consensus             CGGAAAAGCAATGGAGGCTTTCTTCGACGAAGGGCTAAAGGTCAGGCCGCAGCCAATTCC