Contig 012893:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026I09Sequence604012893 (2)ref|XP_006346360.1|1e-60PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum tuberosum]713020203ref|XP_006346360.1|2e-104PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum tuberosum]
JMFF041O02Sequence632012893 (2)ref|XP_006346360.1|1e-63PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFF041O02+                                       TGAAGTTTATAAGCACCTGAACAGGCATCCCT
JMFF026I09+                                                                   CCCT
                      ____________________________________________________________
consensus                                         TGAAGTTTATAAGCACCTGAACAGGCATCCCT
 
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JMFF041O02+           GGGGGTTTATTGACAACAAGAATTGTAGGATCCTTGTATAATTCAATACTATGGAGAAAC
JMFF026I09+           GGGGGTTTATTGACAACAAGAATTGTAGGATCCTTGTATAATTCAATACTATGGAGAAAC
                      ____________________________________________________________
consensus             GGGGGTTTATTGACAACAAGAATTGTAGGATCCTTGTATAATTCAATACTATGGAGAAAC
 
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JMFF041O02+           TCTCTTTGTTCTTCGCTATAAAGGTGCTCAACTTCTTTTTCAGCAGGGAACTTTTCAACA
JMFF026I09+           TCTCTTTGTTCTTCGCTATAAAGGTGCTCAACTTCTTTTTCAGCAGGGAACTTTTCAACA
                      ____________________________________________________________
consensus             TCTCTTTGTTCTTCGCTATAAAGGTGCTCAACTTCTTTTTCAGCAGGGAACTTTTCAACA
 
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JMFF041O02+           GTTACAGGAAGTAATATTTGATCCCCAGTATTGATTAACTCTTTAGCATTGACCCTCCTG
JMFF026I09+           GTTACAGGAAGTAATATTTGATCCCCAGTATTGATTAACTCTTTAGCATTGACCCTCCTG
                      ____________________________________________________________
consensus             GTTACAGGAAGTAATATTTGATCCCCAGTATTGATTAACTCTTTAGCATTGACCCTCCTG
 
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JMFF041O02+           CGTTGCGGTTCTTGGTCAGGAGAGGATACCCTTCGAACCTGTCTTAATCGAAACAATTTC
JMFF026I09+           CGTTGCGGTTCTTGGTCAGGAGAGGATACCCTTCGAACCTGTCTTAATCGAAACAATTTC
                      ____________________________________________________________
consensus             CGTTGCGGTTCTTGGTCAGGAGAGGATACCCTTCGAACCTGTCTTAATCGAAACAATTTC
 
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JMFF041O02+           TGTACGAGAGACCTTGGCAACTCAGGGCAGCAATGCAGAACCCATTTCAGCGCCGTCATG
JMFF026I09+           TGTACGAGAGACCTTGGCAACTCAGGGCAGCAATGCAGAACCCATTTCAGCGCCGTCATG
                      ____________________________________________________________
consensus             TGTACGAGAGACCTTGGCAACTCAGGGCAGCAATGCAGAACCCATTTCAGCGCCGTCATG
 
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JMFF041O02+           GTGGTGACAGTTTTCCCCATAGTATCTGATCGCCTTCCTGCGAGCTCTTTCCCAAGAGCA
JMFF026I09+           GTGGTGACAGTTTTCCCCATAGTATCTGATCGCCTTCCTGCGAGCTCTTTCCCAAGAGCA
                      ____________________________________________________________
consensus             GTGGTGACAGTTTTCCCCATAGTATCTGATCGCCTTCCTGCGAGCTCTTTCCCAAGAGCA
 
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JMFF041O02+           GAACCATCTATAGAGGGAGTGTATGGAGGTAGAGTGAACCACTTGTCTTTCCTCTTCGCG
JMFF026I09+           GAACCATCTATAGAGGGAGTGTATGGAGGTAGAGTGAACCACTTGTCTTTCCTCTTCGCG
                      ____________________________________________________________
consensus             GAACCATCTATAGAGGGAGTGTATGGAGGTAGAGTGAACCACTTGTCTTTCCTCTTCGCG
 
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JMFF041O02+           CTCTCGCCTTCTCTCTCCGCCCCAGCCTGGGCCATGGTAGTGGCACAGTGACATCGCCGG
JMFF026I09+           CTCTCGCCTTCTCTCTCCGCCCCAGCCTGGGCCATGGTAGTGGCACAGTGACATCGCCGG
                      ____________________________________________________________
consensus             CTCTCGCCTTCTCTCTCCGCCCCAGCCTGGGCCATGGTAGTGGCACAGTGACATCGCCGG
 
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JMFF041O02+           AGGAAGAACCCTGAGCTTAACGAGTTCTCATCGCCGAGAACGGCGATAAACCGCCGGCAG
JMFF026I09+           AGGAAGAACCCTGAGCTTAACGAGTTCTCATCGCCGAGAACGGCGATAAACCGCCGGCAG
                      ____________________________________________________________
consensus             AGGAAGAACCCTGAGCTTAACGAGTTCTCATCGCCGAGAACGGCGATAAACCGCCGGCAG
 
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JMFF041O02+           TAAACGGAAGCTTGGCGGAGGACAGAACGCTCCGCCATAGTTAAGAGTTTTGGGCTTTTT
JMFF026I09+           TAAACGGAAGCTTGGCGGAGGACAGAACGCTCCGCCATAGTTAAGAGTTTTGGGCTTTTT
                      ____________________________________________________________
consensus             TAAACGGAAGCTTGGCGGAGGACAGAACGCTCCGCCATAGTTAAGAGTTTTGGGCTTTTT