Contig 012890:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001H05Sequence458012890 (5)ref|XP_006348235.1|9e-09PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Solanum tuberosum]657007169 (5)ref|XP_010242958.1|1e-104PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Nelumbo nucifera] ref|XP_0102
JMFF025K24Sequence454012890 (5)ref|XP_004244215.1|1e-05PREDICTED: ultraviolet-B receptor UVR8 [Solanum lycopersicum]296007169 (5)ref|XP_010241980.1|2e-46PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform X4 [Nelumbo nucif
JMSF034G16Sequence457012890 (5)ref|XP_004244215.1|8e-04PREDICTED: ultraviolet-B receptor UVR8 [Solanum lycopersicum]749007169 (5)ref|XP_010242958.1|2e-103PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Nelumbo nucifera] ref|XP_0102
JMSF035C17Sequence405012890 (5)707007169 (5)ref|XP_009804874.1|3e-76PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform X2 [Nicotiana syl
JMSF045O24Sequence487012890 (5)ref|XP_004244215.1|3e-07PREDICTED: ultraviolet-B receptor UVR8 [Solanum lycopersicum]614007169 (5)ref|XP_009804874.1|2e-51PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform X2 [Nicotiana syl

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF045O24+ TAAACTCNCT
                      ____________________________________________________________
consensus TAAACTCNCT
 
. : . : . : . : . : . :
JMFF001H05+ CCCGACGTCAAGATTTCAAGAACCAAATGCCCTGGCAAG
JMSF034G16+ CGTCAAGATTTCNAGAACCAAATGCCCTGGCAAG
JMSF045O24+ AAATCAACAGNGCTCNATNGNCCCGNCGTCAAGATTTCAAGAACCAAATGCNCTGGCAAG
JMFF025K24+ CGTCAAGATTTCAAGAACCAAATGCNCTGGCAAG
                      ____________________________________________________________
consensus AAATCAACAGNGCTCNATNGNCCCGACGTCAAGATTTCAAGAACCAAATGCCCTGGCAAG
 
. : . : . : . : . : . :
JMFF001H05+ TCATCCATGGAAGCTGACCTCAATTTATCCCCCATTTTCATCCNCAAAATGTAAAACCCA
JMSF034G16+ TCATCCNTGGAAGCTGNCCTCAATTTNTCCCCCNTTTTCNTCCCCNAAATGTNAAACCCN
JMSF045O24+ TCATCCNTGGAAGCTGACCTCAATTTNTCCCCCNTTTTCATCCCCAAAATGTAAAACCCN
JMFF025K24+ TCATCCATGGAAGNTGNCCTCAATTTATCCCCCNTTTTCATCCCCAAAATGTAAAACCCN
                      ____________________________________________________________
consensus TCATCCATGGAAGCTGACCTCAATTTATCCCCCATTTTCATCCCCAAAATGTAAAACCCA
 
. : . : . : . : . : . :
JMFF001H05+ GAATNGGAAAAAGAAAAAAAAAAATCCCAGAAATACGAAAGCTATCAAATTTTTAGGCGA
JMSF035C17+ AAAAAAAAAAATCCCAGAAATACGAAAGCTATCAAATTTTTAGGCGA
JMSF034G16+ GNATNGGAAAAAGAAAAAAAAAAATCCCAGAAATACGAAAGCTATCAAATTTTTAGGCGA
JMSF045O24+ GAATNGGAAAAAGAAAAAAAAAAATCCCAGAAATACGAAAGCTATCAAATTTTTAGGCGA
JMFF025K24+ GAATNGGAAAAAGAAAAAAAAAAATCCCAGAAATACGAAAGCTATCAAATTTTTAGGCGA
                      ____________________________________________________________
consensus GAATNGGAAAAAGAAAAAAAAAAATCCCAGAAATACGAAAGCTATCAAATTTTTAGGCGA
 
. : . : . : . : . : . :
JMFF001H05+ AATCGGAGACAGTTGAGACAGTTTATGAAGAAAACATCAGATTTAACGAAATTCGACAAA
JMSF035C17+ AATCGGAGACAGTTGAGACAGTTTATGAAGAAAACATCAGATTTAACGAAATTCGACAAA
JMSF034G16+ AATCGGAGACAGTTGAGACAGTTTATGAAGAAAACATCAGATTTAACGAAATTCGACAAA
JMSF045O24+ AATCGGAGACAGTTGAGACAGTTTATGAAGAAAACATCAGATTTAACGAAATTCGACAAA
JMFF025K24+ AATCGGAGACAGTTGAGACAGTTTATGAAGAAAACATCAGATTTAACGAAATTCGACAAA
                      ____________________________________________________________
consensus AATCGGAGACAGTTGAGACAGTTTATGAAGAAAACATCAGATTTAACGAAATTCGACAAA
 
. : . : . : . : . : . :
JMFF001H05+ ATTGAATACGAAAATCGTGGATTCAGTGAAATTATCATCAGAAGACGGAACCTTCAAAGC
JMSF035C17+ ATTGAATACGAAAATCGTGGATTCAGTGAAATTATCATCAGAAGACGGAACCTTCAAAGC
JMSF034G16+ ATTGAATACGAAAATCGTGGATTCAGTGAAATTATCATCAGAAGACGGAACCTTCAAAGC
JMSF045O24+ ATTGAATACGAAAATCGTGGATTCAGTGAAATTATCATCAGAAGACGGAACCTTCAAAGC
JMFF025K24+ ATTGAATACGAAAATCGTGGATTCAGTGAAATTATCATCAGAAGACGGAACCTTCAAAGC
                      ____________________________________________________________
consensus ATTGAATACGAAAATCGTGGATTCAGTGAAATTATCATCAGAAGACGGAACCTTCAAAGC
 
. : . : . : . : . : . :
JMFF001H05+ TGAAAAGTGAAAACCCAATTCAAAACTTTTCCAAGTAAAGCTTCAAAAGAATTTTAAAAA
JMSF035C17+ TGAAAAGTGAAAACCCAATTCAAAACTTTTCCAAGTAAAGCTTCAAAAGAATTTTAAAAA
JMSF034G16+ TGAAAAGTGAAAACCCAATTCAAAACTTTTCCAAGTAAAGCTTCAAAAGAATTTTAAAAA
JMSF045O24+ TGAAAAGTGAAAACCCAATTCAAAACTTTTCCAAGTAAAGCTTCAAAAGAATTTTAAAAA
JMFF025K24+ TGAAAAGTGAAAACCCAATTCAAAACTTTTCCAAGTAAAGCTTCAAAAGAATTTTAAAAA
                      ____________________________________________________________
consensus TGAAAAGTGAAAACCCAATTCAAAACTTTTCCAAGTAAAGCTTCAAAAGAATTTTAAAAA
 
. : . : . : . : . : . :
JMFF001H05+ CCCAGATCTCAAAACCGTACAGGAAGCCAAAATTCAAAGAAAATCAGAACAGAAAGAGAG
JMSF035C17+ CCCAGATCTCAAAACCGTACAGGAAGCCAAAATTCAAAGAAAATCAGAACAGAAAGAGAG
JMSF034G16+ CCCAGATCTCAAAACCGTACAGGAAGCCAAAATTCAAAGAAAATCAGAACAGAAAGAGAG
JMSF045O24+ CCCAGATCTCAAAACCGTACAGGAAGCCAAAATTCAAAGAAAATCAGAACAGAAAGAGAG
JMFF025K24+ CCCAGATCTCAAAACCGTACAGGAAGCCAAAATTCAAAGAAAATCAGAACAGAAAGAGAG
                      ____________________________________________________________
consensus CCCAGATCTCAAAACCGTACAGGAAGCCAAAATTCAAAGAAAATCAGAACAGAAAGAGAG
 
. : . : . : . : . : . :
JMFF001H05+ AAACCCAGGGGTTTGCGAGATCTCAAGTATGTGAAGAACGGAGAATTCAG
JMSF035C17+ AAACCCAGGGGTTTGCGAGATCTCAAGTATGTGAAGAACGGAGAATTCAGTAGCG
JMSF034G16+ AAACCCAGGGGTTTGCGAGATCTCAAGTATGTGAAGAACGGAGAATTCAGTAGCG
JMSF045O24+ AAACCCAGGGGTTTGCGAGATCTCAAGTATGTGAAGAACGGAGAATTCAGTAGCG
JMFF025K24+ AAACCCAGGGGTTTGCGAGATCTCAAGTATGTGAAGAACGGAGAATTCAGTAGCGGAGTC
                      ____________________________________________________________
consensus AAACCCAGGGGTTTGCGAGATCTCAAGTATGTGAAGAACGGAGAATTCAGTAGCGGAGTC