| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001H05 | Sequence | 458 | 012890 (5) | ref|XP_006348235.1| | 9e-09 | PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Solanum tuberosum] | 657 | 007169 (5) | ref|XP_010242958.1| | 1e-104 | PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Nelumbo nucifera] ref|XP_0102 |
| JMFF025K24 | Sequence | 454 | 012890 (5) | ref|XP_004244215.1| | 1e-05 | PREDICTED: ultraviolet-B receptor UVR8 [Solanum lycopersicum] | 296 | 007169 (5) | ref|XP_010241980.1| | 2e-46 | PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform X4 [Nelumbo nucif |
| JMSF034G16 | Sequence | 457 | 012890 (5) | ref|XP_004244215.1| | 8e-04 | PREDICTED: ultraviolet-B receptor UVR8 [Solanum lycopersicum] | 749 | 007169 (5) | ref|XP_010242958.1| | 2e-103 | PREDICTED: ultraviolet-B receptor UVR8 isoform X3 [Nelumbo nucifera] ref|XP_0102 |
| JMSF035C17 | Sequence | 405 | 012890 (5) | 707 | 007169 (5) | ref|XP_009804874.1| | 3e-76 | PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform X2 [Nicotiana syl | |||
| JMSF045O24 | Sequence | 487 | 012890 (5) | ref|XP_004244215.1| | 3e-07 | PREDICTED: ultraviolet-B receptor UVR8 [Solanum lycopersicum] | 614 | 007169 (5) | ref|XP_009804874.1| | 2e-51 | PREDICTED: probable E3 ubiquitin-protein ligase HERC3 isoform X2 [Nicotiana syl |
This contig is upended
. : . : . : . : . : . :
JMSF045O24+ TAAACTCNCT
____________________________________________________________
consensus TAAACTCNCT
. : . : . : . : . : . :
JMFF001H05+ CCCGACGTCAAGATTTCAAGAACCAAATGCCCTGGCAAG
JMSF034G16+ CGTCAAGATTTCNAGAACCAAATGCCCTGGCAAG
JMSF045O24+ AAATCAACAGNGCTCNATNGNCCCGNCGTCAAGATTTCAAGAACCAAATGCNCTGGCAAG
JMFF025K24+ CGTCAAGATTTCAAGAACCAAATGCNCTGGCAAG
____________________________________________________________
consensus AAATCAACAGNGCTCNATNGNCCCGACGTCAAGATTTCAAGAACCAAATGCCCTGGCAAG
. : . : . : . : . : . :
JMFF001H05+ TCATCCATGGAAGCTGACCTCAATTTATCCCCCATTTTCATCCNCAAAATGTAAAACCCA
JMSF034G16+ TCATCCNTGGAAGCTGNCCTCAATTTNTCCCCCNTTTTCNTCCCCNAAATGTNAAACCCN
JMSF045O24+ TCATCCNTGGAAGCTGACCTCAATTTNTCCCCCNTTTTCATCCCCAAAATGTAAAACCCN
JMFF025K24+ TCATCCATGGAAGNTGNCCTCAATTTATCCCCCNTTTTCATCCCCAAAATGTAAAACCCN
____________________________________________________________
consensus TCATCCATGGAAGCTGACCTCAATTTATCCCCCATTTTCATCCCCAAAATGTAAAACCCA
. : . : . : . : . : . :
JMFF001H05+ GAATNGGAAAAAGAAAAAAAAAAATCCCAGAAATACGAAAGCTATCAAATTTTTAGGCGA
JMSF035C17+ AAAAAAAAAAATCCCAGAAATACGAAAGCTATCAAATTTTTAGGCGA
JMSF034G16+ GNATNGGAAAAAGAAAAAAAAAAATCCCAGAAATACGAAAGCTATCAAATTTTTAGGCGA
JMSF045O24+ GAATNGGAAAAAGAAAAAAAAAAATCCCAGAAATACGAAAGCTATCAAATTTTTAGGCGA
JMFF025K24+ GAATNGGAAAAAGAAAAAAAAAAATCCCAGAAATACGAAAGCTATCAAATTTTTAGGCGA
____________________________________________________________
consensus GAATNGGAAAAAGAAAAAAAAAAATCCCAGAAATACGAAAGCTATCAAATTTTTAGGCGA
. : . : . : . : . : . :
JMFF001H05+ AATCGGAGACAGTTGAGACAGTTTATGAAGAAAACATCAGATTTAACGAAATTCGACAAA
JMSF035C17+ AATCGGAGACAGTTGAGACAGTTTATGAAGAAAACATCAGATTTAACGAAATTCGACAAA
JMSF034G16+ AATCGGAGACAGTTGAGACAGTTTATGAAGAAAACATCAGATTTAACGAAATTCGACAAA
JMSF045O24+ AATCGGAGACAGTTGAGACAGTTTATGAAGAAAACATCAGATTTAACGAAATTCGACAAA
JMFF025K24+ AATCGGAGACAGTTGAGACAGTTTATGAAGAAAACATCAGATTTAACGAAATTCGACAAA
____________________________________________________________
consensus AATCGGAGACAGTTGAGACAGTTTATGAAGAAAACATCAGATTTAACGAAATTCGACAAA
. : . : . : . : . : . :
JMFF001H05+ ATTGAATACGAAAATCGTGGATTCAGTGAAATTATCATCAGAAGACGGAACCTTCAAAGC
JMSF035C17+ ATTGAATACGAAAATCGTGGATTCAGTGAAATTATCATCAGAAGACGGAACCTTCAAAGC
JMSF034G16+ ATTGAATACGAAAATCGTGGATTCAGTGAAATTATCATCAGAAGACGGAACCTTCAAAGC
JMSF045O24+ ATTGAATACGAAAATCGTGGATTCAGTGAAATTATCATCAGAAGACGGAACCTTCAAAGC
JMFF025K24+ ATTGAATACGAAAATCGTGGATTCAGTGAAATTATCATCAGAAGACGGAACCTTCAAAGC
____________________________________________________________
consensus ATTGAATACGAAAATCGTGGATTCAGTGAAATTATCATCAGAAGACGGAACCTTCAAAGC
. : . : . : . : . : . :
JMFF001H05+ TGAAAAGTGAAAACCCAATTCAAAACTTTTCCAAGTAAAGCTTCAAAAGAATTTTAAAAA
JMSF035C17+ TGAAAAGTGAAAACCCAATTCAAAACTTTTCCAAGTAAAGCTTCAAAAGAATTTTAAAAA
JMSF034G16+ TGAAAAGTGAAAACCCAATTCAAAACTTTTCCAAGTAAAGCTTCAAAAGAATTTTAAAAA
JMSF045O24+ TGAAAAGTGAAAACCCAATTCAAAACTTTTCCAAGTAAAGCTTCAAAAGAATTTTAAAAA
JMFF025K24+ TGAAAAGTGAAAACCCAATTCAAAACTTTTCCAAGTAAAGCTTCAAAAGAATTTTAAAAA
____________________________________________________________
consensus TGAAAAGTGAAAACCCAATTCAAAACTTTTCCAAGTAAAGCTTCAAAAGAATTTTAAAAA
. : . : . : . : . : . :
JMFF001H05+ CCCAGATCTCAAAACCGTACAGGAAGCCAAAATTCAAAGAAAATCAGAACAGAAAGAGAG
JMSF035C17+ CCCAGATCTCAAAACCGTACAGGAAGCCAAAATTCAAAGAAAATCAGAACAGAAAGAGAG
JMSF034G16+ CCCAGATCTCAAAACCGTACAGGAAGCCAAAATTCAAAGAAAATCAGAACAGAAAGAGAG
JMSF045O24+ CCCAGATCTCAAAACCGTACAGGAAGCCAAAATTCAAAGAAAATCAGAACAGAAAGAGAG
JMFF025K24+ CCCAGATCTCAAAACCGTACAGGAAGCCAAAATTCAAAGAAAATCAGAACAGAAAGAGAG
____________________________________________________________
consensus CCCAGATCTCAAAACCGTACAGGAAGCCAAAATTCAAAGAAAATCAGAACAGAAAGAGAG
. : . : . : . : . : . :
JMFF001H05+ AAACCCAGGGGTTTGCGAGATCTCAAGTATGTGAAGAACGGAGAATTCAG
JMSF035C17+ AAACCCAGGGGTTTGCGAGATCTCAAGTATGTGAAGAACGGAGAATTCAGTAGCG
JMSF034G16+ AAACCCAGGGGTTTGCGAGATCTCAAGTATGTGAAGAACGGAGAATTCAGTAGCG
JMSF045O24+ AAACCCAGGGGTTTGCGAGATCTCAAGTATGTGAAGAACGGAGAATTCAGTAGCG
JMFF025K24+ AAACCCAGGGGTTTGCGAGATCTCAAGTATGTGAAGAACGGAGAATTCAGTAGCGGAGTC
____________________________________________________________
consensus AAACCCAGGGGTTTGCGAGATCTCAAGTATGTGAAGAACGGAGAATTCAGTAGCGGAGTC