| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011D06 | Sequence | 552 | 012885 (11) | gb|ADP37417.1| | 1e-54 | ethylene-responsive-element-binding factor 2 [Petunia x hybrida] | 721 | 006943 (12) | ref|XP_009794756.1| | 9e-45 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Nicotiana syl |
| JMFF012I03 | Sequence | 539 | 012885 (11) | gb|AAP40022.1| | 2e-43 | callus-expressing factor [Nicotiana tabacum] | 714 | 006943 (12) | ref|XP_009794756.1| | 6e-43 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Nicotiana syl |
| JMFF019B13 | Sequence | 403 | 012885 (11) | gb|AAP40022.1| | 1e-22 | callus-expressing factor [Nicotiana tabacum] | 259 | 006943 (12) | |||
| JMFF024F09 | Sequence | 470 | 012885 (11) | gb|AAP40022.1| | 9e-33 | callus-expressing factor [Nicotiana tabacum] | 717 | 006943 (12) | ref|XP_009605490.1| | 5e-54 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Nicotiana tom |
| JMFF025A04 | Sequence | 537 | 012885 (11) | gb|AAP40022.1| | 3e-33 | callus-expressing factor [Nicotiana tabacum] | 753 | 006943 (12) | ref|XP_009794756.1| | 9e-40 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Nicotiana syl |
| JMFF026F08 | Sequence | 567 | 012885 (11) | gb|AAP40022.1| | 9e-55 | callus-expressing factor [Nicotiana tabacum] | 757 | 006943 (12) | ref|XP_009605490.1| | 7e-58 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Nicotiana tom |
| JMFF028M08 | Sequence | 404 | 012885 (11) | gb|AAP40022.1| | 5e-23 | callus-expressing factor [Nicotiana tabacum] | 169 | 008183 (5) | |||
| JMFF037F17 | Sequence | 548 | 012885 (11) | gb|AAP40022.1| | 4e-52 | callus-expressing factor [Nicotiana tabacum] | 666 | 006943 (12) | ref|XP_009794756.1| | 4e-36 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Nicotiana syl |
| JMFF039M08 | Sequence | 541 | 012885 (11) | gb|AAP40022.1| | 4e-52 | callus-expressing factor [Nicotiana tabacum] | 726 | 006943 (12) | ref|XP_009794756.1| | 1e-35 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Nicotiana syl |
| JMFF039N08 | Sequence | 547 | 012885 (11) | gb|ADP37417.1| | 2e-53 | ethylene-responsive-element-binding factor 2 [Petunia x hybrida] | 724 | 006943 (12) | ref|XP_009794756.1| | 2e-45 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Nicotiana syl |
| JMFF044E01 | Sequence | 612 | 012885 (11) | gb|AAP40022.1| | 2e-64 | callus-expressing factor [Nicotiana tabacum] | 501 | 006943 (12) | ref|XP_009605490.1| | 3e-20 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like [Nicotiana tom |
This contig is upended
. : . : . : . : . : . :
JMFF044E01+ CGTGAGTGGAGCATCAT
____________________________________________________________
consensus CGTGAGTGGAGCATCAT
. : . : . : . : . : . :
JMFF044E01+ CAGGGAAATTCACCTTTGCTTTCTTGCCCCTGATCCTCCGAGCCTCAATATCATAAGCCC
JMFF039M08+ CTCAATATCATAAGCCC
JMFF037F17+ CTCAATATCATAAGCCC
JMFF039N08+ CCGAGCCTCAATATCATAAGCCC
JMFF011D06+ CAATATCATAAGCCC
JMFF026F08+ TGATCCTCCGAGCCTCAATATCATAAGCCC
____________________________________________________________
consensus CAGGGAAATTCACCTTTGCTTTCTTGCCCCTGATCCTCCGAGCCTCAATATCATAAGCCC
. : . : . : . : . : . :
JMFF044E01+ TCGCTGCTTCTTCAGCAGTGTCAAACGTTCCAAGCCAGACACGAACACCTTTACTTGGAT
JMFF039M08+ TCGCTGCTTCTTCAGCAGTGTCAAACGTTCCAAGCCAGACACGAACACCTTTACTTGGAT
JMFF037F17+ TCGCTGCTTCTTCAGCAGTGTCAAACGTTCCAAGCCAGACACGAACACCTTTACTTGGAT
JMFF039N08+ TCGCTGCTTCTTCAGCAGTGTCAAACGTTCCAAGCCAGACACGAACACCTTTACTTGGAT
JMFF011D06+ TCGCTGCTTCTTCAGCAGTGTCAAACGTTCCAAGCCAGACACGAACACCTTTACTTGGAT
JMFF026F08+ TCGCTGCTTCTTCAGCAGTGTCAAACGTTCCAAGCCAGACACGAACACCTTTACTTGGAT
JMFF012I03+ CAAGCCAGACACGAACACCTTTACTTGGAT
____________________________________________________________
consensus TCGCTGCTTCTTCAGCAGTGTCAAACGTTCCAAGCCAGACACGAACACCTTTACTTGGAT
. : . : . : . : . : . :
JMFF044E01+ CACGGATCTCAGCAGCCCATTTCCCCCAAGGACGCTGCCGGATCCCCCTGTACTGGTTCT
JMFF039M08+ CACGGATCTCAGCAGCCCATTTCCCCCAAGGACGCTGCCGGATCCCCCTGTACTGGTTCT
JMFF037F17+ CACGGATCTCAGCAGCCCATTTCCCCCAAGGACGCTGCCGGATCCCCCTGTACTGGTTCT
JMFF039N08+ CACGGATCTCAGCAGCCCATTTCCCCCAAGGACGCTGCCGGATCCCCCTGTACTGGTTCT
JMFF011D06+ CACGGATCTCAGCAGCCCATTTCCCCCAAGGACGCTGCCGGATCCCCCTGTACTGGTTCT
JMFF024F09+ CTCAGCAGCCCATTTCCCCCAAGGACGCTGCCGGATCCCCCTGTACTGGTTCT
JMFF026F08+ CACGGATCTCAGCAGCCCATTTCCCCCAAGGACGCTGCCGGATCCCCCTGTACTGGTTCT
JMFF012I03+ CACGGATCTCAGCAGCCCATTTCCCCCAAGGACGCTGCCGGATCCCCCTGTACTGGTTCT
JMFF025A04+ GGATCTCAGCAGCCCATTTCCCCCAAGGACGCTGCCGGATCCCCCTGTACTGGTTCT
____________________________________________________________
consensus CACGGATCTCAGCAGCCCATTTCCCCCAAGGACGCTGCCGGATCCCCCTGTACTGGTTCT
. : . : . : . : . : . :
JMFF044E01+ TCCTCTTCCTCTTGGAGGAATTGTCAGCATCCTTGCTTGAATCAGAGTCGGGGCCAGAAG
JMFF039M08+ TCCTCTTCCTCTTGGAGGAATTGTCAGCATCCTTGCTTGAATCAGAGTCGGGGCCAGAAG
JMFF028M08+ TCCTCTTCCTCTTGGAGGAATTGTCAGCATCCTTGCTTGAATCAGAGTCGGGGCCAGAAG
JMFF037F17+ TCCTCTTCCTCTTGGAGGAATTGTCAGCATCCTTGCTTGAATCAGAGTCGGGGCCAGAAG
JMFF039N08+ TCCTCTTCCTCTTGGAGGAATTGTCAGCATCCTTGCTTGAATCAGAGTCGGGGCCAGAAG
JMFF011D06+ TCCTCTTCCTNTTGGAGGAATTGTCAGCATCCTTGCTTGAATCAGAGTCGGGGCCAGAAG
JMFF024F09+ TCCTCTTCCTCTTGGAGGAATTGTCAGCATCCTTGCTTGAATCAGAGTCGGGGCCAGAAG
JMFF019B13+ GAGGAATTGTCAGCATCCTTGCTTGAATCAGAGTCGGGGCCAGAAG
JMFF026F08+ TCCTCTTCCTCTTGGAGGAATTGTCAGCATCCTTGCTTGAATCAGAGTCGGGGCCAGAAG
JMFF012I03+ TCCTCTTCCTCTTGGAGGAATTGTCAGCATCCTTGCTTGAATCAGAGTCGGGGCCAGAAG
JMFF025A04+ TCCTCTTCCTCTTGGAGGAATTGTCAGCATCCTTGCTTGAATCAGAGTCGGGGCCAGAAG
____________________________________________________________
consensus TCCTCTTCCTCTTGGAGGAATTGTCAGCATCCTTGCTTGAATCAGAGTCGGGGCCAGAAG
. : . : . : . : . : . :
JMFF044E01+ AAAACCCTGGGCGATGCGAAGCGGAGAAGGCAAAGGGCTTAGCATCGACCTGGCTATAGG
JMFF039M08+ AAAACCCAGGGCGATGCGAAGCGGAGAAGGCAAAGGGCTTAGCATCGACCTGGCTATAGG
JMFF028M08+ AAAACCCAGGGCGATGCGAAGCGGAGAAGGCAAAGGGCTTAGCATCGACCTGGCTATAGG
JMFF037F17+ AAAACCCAGGGCGATGCGAAGCGGAGAAGGCAAAGGGCTTAGCATCGACCTGGCTATAGG
JMFF039N08+ AAAACCCAGGGCGATGCGAAGCGGAGAAGGCAAAGGGCTTAGCATCGACCTGGCTATAGG
JMFF011D06+ AAAACCCAGGGCGATGCGAAGCGGAGAAGGCAAAGGGCTTAGCATCGACCTGGCTATAGG
JMFF024F09+ AAAACCCAGGGCGATGCGAAGCGGAGAAGGCAAAGGGCTTAGCATCGACCTGGCTATAGG
JMFF019B13+ AAAACCCAGGGCGATGCGAAGCGGAGAAGGCAAAGGGCTTAGCATCGACCTGGCTATAGG
JMFF026F08+ AAAACCCAGGGCGATGCGAAGCGGAGAAGGCAAAGGGCTTAGCATCGACCTGGCTATAGG
JMFF012I03+ AAAACCCAGGGCGATGCGAAGCGGAGAAGGCAAAGGGCTTAGCATCGACCTGGCTATAGG
JMFF025A04+ AAAACCCAGGGCGATGCGAAGCGGAGAAGGCAAAGGGCTTAGCATCGACCTGGCTATAGG
____________________________________________________________
consensus AAAACCCAGGGCGATGCGAAGCGGAGAAGGCAAAGGGCTTAGCATCGACCTGGCTATAGG
. : . : . : . : . : . :
JMFF044E01+ AGTGGTCCTTGAAGTCCTGAAAATCAGCTTCGAAGTCATCATCGAGGACAACGACCTCAG
JMFF039M08+ AGTGGTCCTTGAAGTCCTGAAAATCAGCTTCGAAGTCATCATCGAGGACAACGACCTCAG
JMFF028M08+ AGTGGTCCTTGAAGTCCTGAAAATCAGCTTCGAAGTCATCATCGAGGACAACGACCTCAG
JMFF037F17+ AGTGGTCCTTGAAGTCCTGAAAATCAGCTTCGAAGTCATCATCGAGGACAACGACCTCAG
JMFF039N08+ AGTGGTCCTTGAAGTCCTGAAAATCAGCTTCGAAGTCATCATCGAGGACAACGACCTCAG
JMFF011D06+ AGTGGTCCTTGAAGTCCTGAAAATCAGCTTCGAAGTCATCATCGAGGACAACGACCTCAG
JMFF024F09+ AGTGGTCCTTGAAGTCCTGAAAATCAGCTTCGAAGTCATCATCGAGGACAACGACCTCAG
JMFF019B13+ AGTGGTCCTTGAAGTCCTGAAAATCAGCTTCGAAGTCATCATCGAGGACAACGACCTCAG
JMFF026F08+ AGTGGTCCTTGAAGTCCTGAAAATCAGCTTCGAAGTCATCATCGAGGACAACGACCTCAG
JMFF012I03+ AGTGGTCCTTGAAGTCCTGAAAATCAGCTTCGAAGTCATCATCGAGGACAACGACCTCAG
JMFF025A04+ AGTGGTCCTTGAAGTCCTGAAAATCAGCTTCGAAGTCATCATCGAGGACAACGACCTCAG
____________________________________________________________
consensus AGTGGTCCTTGAAGTCCTGAAAATCAGCTTCGAAGTCATCATCGAGGACAACGACCTCAG
. : . : . : . : . : . :
JMFF044E01+ ATCGCAAGGGCTTGGAGTAGTGGCTGCCGGAAGAGTTGCTCTTCTTCTTGCCGCCGCTCA
JMFF039M08+ ATCGCAAGGGCTTGGAGTAGTGGCTGCCGGAAGAGTTGCTCTTCTTCTTGCCGCCGCTCA
JMFF028M08+ ATCGCAAGGGCTTGGAGTAGTGGCTGCCGGAAGAGTTGCTCTTCTTCTTGCCGCCGCTCA
JMFF037F17+ ATCGCAAGGGCTTGGAGTAGTGGCTGCCGGAAGAGTTGCTCTTCTTCTTGCCGCCGCTCA
JMFF039N08+ ATCGCAAGGGCTTGGAGTAGTGGCTGCCGGAAGAGTTGCTCTTCTTCTTGCCGCCGCTCA
JMFF011D06+ ATCGCAAGGGCTTGGAGTAGTGGCTGCCGGAAGAGTTGCTCTTCTTCTTGCCGCCGCTCA
JMFF024F09+ ATCGCAAGGGCTTGGAGTAGTGGCTGCCGGAAGAGTTGCTCTTCTTCTTGCCGCCGCTCA
JMFF019B13+ ATCGCACGGGCTTGGAGTAGTGGCTGCCGGAAGAGTTGCTCTTCTTCTTGCCGCCGCTCA
JMFF026F08+ ATCGCAAGGGCTTGGAGTAGTGGCTGCCGGAAGAGTTGCTCTTCTTCTTGCCGCCGCTCA
JMFF012I03+ ATCGCAAGGGCTTGGAGTAGTGGCTGCCGGCAGAGTTGCTCTTCTTCTTGCCGCCGCTCA
JMFF025A04+ ATCGCAAGGGCTTGGAGTAGTGGCTGCCGGAAGAGTTGCTCTTCTTCTTGCCGCCGCTCA
____________________________________________________________
consensus ATCGCAAGGGCTTGGAGTAGTGGCTGCCGGAAGAGTTGCTCTTCTTCTTGCCGCCGCTCA
. : . : . : . : . : . :
JMFF044E01+ GATCAGCGCGCCCCCACAGCAGGTCGGCGGTGAGGCGCCGCGACGATCGGCTCGGCGGCT
JMFF039M08+ GATCAGCGCGCCCCCACAGCAGGTCGGCGGTGAGGCGCCGCGACGATCGGCTCGGCGGCT
JMFF028M08+ GATCAGCGCGCCCCCACAGCAGGTCGGCGGTGAGGCGCCGCGACGATCGGCTCGGCGGCT
JMFF037F17+ GATCAGCGCGCCCCCACAGCAGGTCGGCGGTGAGGCGCCGCGACGATCGGCTCGGCGGCT
JMFF039N08+ GATCAGCGCGCCCCCACAGCAGGTCGGCGGTGAGGCGCCGCGACGATCGGCTCGGCGGCT
JMFF011D06+ GATCAGCGCGCCCCCACAGCAGGTCGGCGGTGAGGCGCCGCGACGATCGGCTCGGCGGCT
JMFF024F09+ GATCAGCGCGCCCCCACAGCAGGTCGGCGGTGAGGCGCCGCGACGATCGGCTCGGCGGCT
JMFF019B13+ GATCAGCGCGCCCCCACAGCAGGTCGGCGGTGAGGCGCCGCGACGATCGGCTCGGCGGCT
JMFF026F08+ GATCAGCGCGCCCCCACAGCAGGTCGGCGGTGAGGCGCCGCGACGATCGGCTCGGCGGCT
JMFF012I03+ GATCAGCGCGCCCCCACAGCAGGTCGGCGGTGAGGCGCCGCGACGATCGGCTCGGCGGCT
JMFF025A04+ GATCAGCGCGCCCCCACAGCAGGTCGGCGGTGAGGCGCCGCGACGATCGGCTCGGCGGCT
____________________________________________________________
consensus GATCAGCGCGCCCCCACAGCAGGTCGGCGGTGAGGCGCCGCGACGATCGGCTCGGCGGCT
. : . : . : . : . : . :
JMFF044E01+ TAAAATCGGAGATGATTGCTCCGCCGCACATGGCTAGCTTTCTTGTTCGGAATCAATGAG
JMFF039M08+ TAAAATCGGAGATGATTGCTCCGCCGCACATGGCTAGCTTTCTTGTTCGGAATCAATGAG
JMFF028M08+ TAAAATCGGAGATGATTGCTCCGCCGCACATGGCTAGCTTTCTTGTTCGGAATCAATGAG
JMFF037F17+ TAAAATCGGAGATGATTGCTCCGCCGCACATGGCTAGCTTTCTTGTTCGGAATCAATGAG
JMFF039N08+ TAAAATCGGAGATGATTGCTCCGCCGCACATGGCTAGCTTTCTTGTTCGGAATCAATGAG
JMFF011D06+ TAAAATCGGAGATGATTGCTCCGCCGCACATGGCTAGCTTTCTTGTTCGGAATCAATGAG
JMFF024F09+ TAAAATCGGAGATGATTGCTCCGCCGCACATGGCTAGCTTTCTTGTTCGGAATCAATGAG
JMFF019B13+ TAAAATCGGAGATGATTGCTCCGCCGCACATGGCTAGCTTTCTTGTTCGGAATCAATGAG
JMFF026F08+ TAAAATCGGAGATGATTGCTCCGCCGCACATGGCTAGCTTTCTTGTTCGGAATCAATGAG
JMFF012I03+ TAAAATCGGAGATGATTGCTCCGCCGCACATGGCTAGCTTTCTTGTTCGGAATCAATGAG
JMFF025A04+ TAAAATCGGAGATGATTGCTCCGCCGCACATGGCTAGCTTTCTTGTTCGGAATCAATGAG
____________________________________________________________
consensus TAAAATCGGAGATGATTGCTCCGCCGCACATGGCTAGCTTTCTTGTTCGGAATCAATGAG
. : . : . : . : . : . :
JMFF044E01+ GATTTTGCAGAGATTTTTGTTGGAAATCATCAAAGAGAATTTTCACTTTTTTTTC
JMFF039M08+ GATTTTGCAGAGATTTTTGTTGGAAATCATCAAAGAGAATTTTC
JMFF028M08+ GATTTTGCAGAGATTTTTGTTGGAAATCATCAAAGAGAATTTTC
JMFF037F17+ GATTTTGCAGAGATTTTTGTTGGAAATCATCAAAGAGAATTTTCACTTTTT
JMFF039N08+ GATTTTGCAGAGATTTTTGTTGGAAATCATCAAAGAGAATTTTC
JMFF011D06+ GATTTTGCAGAGATTTTTGTTGGAAATCATCAAAGAGAATTTTCACTTTTTTT
JMFF024F09+ GATTTTGCAGAGATTTTTGTTGGAAATCATCAAAGAGAATTTTCACTTTTTTTTC
JMFF019B13+ GATTTTGCAGAGATTTTTGTTGGAAATCATCAAAGAGAATTTTCACTTTTTTTTCTT
JMFF026F08+ GATTTTGCAGAGATTTTTGTTGGAAATCATCAAAGAGAATTTTCACTTTTTTTTCTT
JMFF012I03+ GATTTTGCAGAGATTTTTGTTGGAAATCATCAAAGAGAATTTTCACTTTTTTTTCTTGTG
JMFF025A04+ GATTTTGCAGAGATTTTTGTTGGAAATCATCAAAGAGAATTTTCACTTTTTTTTCTTGTG
____________________________________________________________
consensus GATTTTGCAGAGATTTTTGTTGGAAATCATCAAAGAGAATTTTCACTTTTTTTTCTTGTG
. : . : . : . : . : . :
JMFF012I03+ AAAAAAGTTTTTGGGGGGTTTTATAAAGC
JMFF025A04+ AAAAAAGTTTTTGGGGGGTTTTATAAAGCGAGGTTGCTAAAGGTGATACGCCGAGAAAAT
____________________________________________________________
consensus AAAAAAGTTTTTGGGGGGTTTTATAAAGCGAGGTTGCTAAAGGTGATACGCCGAGAAAAT