Contig 012878:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022K19Sequence462012878 (4)ref|XP_009757573.1|3e-27PREDICTED: protein NRT1/ PTR FAMILY 4.5-like isoform X2 [Nicotiana sylvestris]603001236 (3)ref|XP_006359595.1|1e-18PREDICTED: probable peptide/nitrate transporter At1g27040-like [Solanum tuberos
JMFS118A12Sequence613012878 (4)ref|XP_009757573.1|2e-94PREDICTED: protein NRT1/ PTR FAMILY 4.5-like isoform X2 [Nicotiana sylvestris]
JMFS126F09Sequence613012878 (4)ref|XP_009757573.1|2e-76PREDICTED: protein NRT1/ PTR FAMILY 4.5-like isoform X2 [Nicotiana sylvestris]
JMFS135H06Sequence617012878 (4)ref|XP_009757573.1|4e-59PREDICTED: protein NRT1/ PTR FAMILY 4.5-like isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFS118A12+                              GTAATTTCAACTTTCGATTTTTATGGACACAACAATAACCT
                      ____________________________________________________________
consensus                                GTAATTTCAACTTTCGATTTTTATGGACACAACAATAACCT
 
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JMFS118A12+           GAATTATTCTTAAGATGGGGGTGTCGCCGGGCGATTGAAGGCGATAGAAAGGGCGGCCGG
                      ____________________________________________________________
consensus             GAATTATTCTTAAGATGGGGGTGTCGCCGGGCGATTGAAGGCGATAGAAAGGGCGGCCGG
 
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JMFS118A12+           CGGCGAGGAAGACGAAGCCAAAGATGGTTCCGATTGTAGAGATGAGAAAACCCAACCACC
                      ____________________________________________________________
consensus             CGGCGAGGAAGACGAAGCCAAAGATGGTTCCGATTGTAGAGATGAGAAAACCCAACCACC
 
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JMFS118A12+           AACCTTTATTAGTGCTGACCCAAACAACAAGGGTGACTCCAAAAGCTGCCCCAGTTGTGC
                      ____________________________________________________________
consensus             AACCTTTATTAGTGCTGACCCAAACAACAAGGGTGACTCCAAAAGCTGCCCCAGTTGTGC
 
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JMFS118A12+           TGGTTAGCAACATGTAGTTGAAGTAGCTCCCAAGGGCTTTGGATTCCCTGGGATCCTTTT
JMFS126F09+                                                                      T
                      ____________________________________________________________
consensus             TGGTTAGCAACATGTAGTTGAAGTAGCTCCCAAGGGCTTTGGATTCCCTGGGATCCTTTT
 
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JMFS118A12+           GATCAAACTGGTCAGCACCCAGAGCTGGTAGGGCACCCCTAACCCCACCGGTCCCCAGTG
JMFS126F09+           GATCAAACTGGTCAGCACCCAGAGCTGGTAGGGCACCCCTAACCCCACCGGTCCCCAGTG
                      ____________________________________________________________
consensus             GATCAAACTGGTCAGCACCCAGAGCTGGTAGGGCACCCCTAACCCCACCGGTCCCCAGTG
 
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JMFS118A12+           CCAGCACACAAAGTGATACATAAAATAGTAGGGCTATGCCCCCCTCTACACAGCTTGACT
JMFS126F09+           CCAGCACACAAAGTGATACATAAAATAGTAGGGCTATGCCCCCCTCTACACAGCTTGACT
JMFS135H06+                    AAAGTGATACATAAAATAGTAGGGCTATGCCCCCCTCTACACAGCTTGACT
                      ____________________________________________________________
consensus             CCAGCACACAAAGTGATACATAAAATAGTAGGGCTATGCCCCCCTCTACACAGCTTGACT
 
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JMFS118A12+           TCCCACATGCCTCCGCTTGAAAACTCTTGAACCTTGCTTGAATTGTCATCAATATCAATC
JMFS126F09+           TCCCACATGCCTCCGCTTGCAAACTCTTGAACCTTGCTTGAATTGTCATCAATATCAATC
JMFS135H06+           TCCCACATGCCTCCGCTTGCAAACTCTTGAACCTTGCTTGAATTGTCATCAATATCAATC
                      ____________________________________________________________
consensus             TCCCACATGCCTCCGCTTGCAAACTCTTGAACCTTGCTTGAATTGTCATCAATATCAATC
 
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JMFS118A12+           CCAGTATCTCAAGCATTCCAAAAATGAGACATGTGTGGAATCTGGTGAGCAAAGTGTCAG
JMFS126F09+           CCAGTATCTCAAGCATTCCAAAAATGAGACATGTGTGGAATCTGGTGAGCAAAGTGTCAG
JMFS135H06+           CCAGTATCTCAAGCATTCCAAAAATGAGACATGTGTGGAATCTGGTGAGCAAAGTGTCAG
                      ____________________________________________________________
consensus             CCAGTATCTCAAGCATTCCAAAAATGAGACATGTGTGGAATCTGGTGAGCAAAGTGTCAG
 
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JMFS118A12+           AAATGAGGCCACCAACAATAGAGAGCAAGAAACTTGAGCCCATGAAGTTTGTGAGTGTGT
JMFS126F09+           AAATGAGGCCACCAACAATAGAGAGCAAGAAACTTGAGCCCATGAAGTTTGTGAGTGTGT
JMFS135H06+           AAATGAGGCCACCAACAATAGAGAGCAAGAAACTTGAGCCCATGAAGTTTGTGAGTGTGT
JMFF022K19+                             TAGAGAGCAAGAAACTTGAGCCCATGAAGTTTGTGAGTGTGT
                      ____________________________________________________________
consensus             AAATGAGGCCACCAACAATAGAGAGCAAGAAACTTGAGCCCATGAAGTTTGTGAGTGTGT
 
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JMFS118A12+           TGGCTGAGCCAGAGATGTCAAAATGCATCTTC                            
JMFS126F09+           TGGCTGAGCCAGAGATGTCAAAATGCATCTTCAGCATGAAGTACAGCACCATGCTAACCA
JMFS135H06+           TGGCTGAGCCAGAGATGTCAAAATGCATCTTCAGCATGAAGTACAGCACCATGCTAACCA
JMFF022K19+           TGGCTGAGCCAGAGATGTCAAAATGCATCTTCAGCATGAAGTACAGCACCATGCTAACCA
                      ____________________________________________________________
consensus             TGGCTGAGCCAGAGATGTCAAAATGCATCTTCAGCATGAAGTACAGCACCATGCTAACCA
 
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JMFS126F09+           TGTTTGCTACAAACCCCATGTTGTCCATTGCCCCCAAAGCATATATGAAACAAGAAGCTC
JMFS135H06+           TGTTTGCTACAAACCCCATGTTGTCCATTGCCCCCAAAGCATATATGAAACAAGAAGCTC
JMFF022K19+           TGTTTGCTACAAACCCCATGTTGTCCATTGCCCCCAAAGCATATATGAAACAAGAAGCTC
                      ____________________________________________________________
consensus             TGTTTGCTACAAACCCCATGTTGTCCATTGCCCCCAAAGCATATATGAAACAAGAAGCTC
 
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JMFS126F09+           TAAAACCACCTTTCCCTTTTACTTTCCATCCACTGATGGAATTATAGTCTGGCTTAGTAT
JMFS135H06+           TAAAACCACCTTTCCCTTTTACTTTCCATCCACTGATGGAATTATAGTCTGGCTTAGTAT
JMFF022K19+           TAAAACCACCTTTCCCTTTTACTTTCCATCCACTGATGGAATTATAGTCTGACTTAGTAT
                      ____________________________________________________________
consensus             TAAAACCACCTTTCCCTTTTACTTTCCATCCACTGATGGAATTATAGTCTGGCTTAGTAT
 
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JMFS126F09+           TTTCCTCCATGGCAGCAGCTAAAGGGTGGCAGTTAGATCAAGAGAGAAACTAACTGCCAC
JMFS135H06+           TTTCCTCCATGGCAGCAGCTAAAGGGTGGCAGTTAGATCAAGAGAGAAACTAACTGCCAC
JMFF022K19+           TTTCCTCCATGGCAGCAGCTAAAGGGTGGCAGTTAGATCAAGAGAGAAACTAACTGCCAC
                      ____________________________________________________________
consensus             TTTCCTCCATGGCAGCAGCTAAAGGGTGGCAGTTAGATCAAGAGAGAAACTAACTGCCAC
 
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JMFS126F09+           TATATATATATGCTTTCTGGATCTGTGTATGAAGTCTGATGGGTAGCTAGGGAAATGGCA
JMFS135H06+           TATATATATATGCTTTCTGGATCTGTGTATGAAGTCTGATGGGTAGCTAGGGAAATGGCA
JMFF022K19+           TATATATATATGCTTTCTGGATCTGTGTATGAAGTCTGATGGGTAGCTAGGGAAATGGCA
                      ____________________________________________________________
consensus             TATATATATATGCTTTCTGGATCTGTGTATGAAGTCTGATGGGTAGCTAGGGAAATGGCA
 
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JMFS126F09+           GAACTGAAGAAA                                                
JMFS135H06+           GAACTGAAGAAATTTGGGTGGAATGAAGTGGAAAATGGAAGGACAAGAATTTAAT-AAGA
JMFF022K19+           GAACTGAAGAAATTTGGGTGGAATGAAGTGGAAAATGGAAGGACAAGAATTTAATGAAGA
                      ____________________________________________________________
consensus             GAACTGAAGAAATTTGGGTGGAATGAAGTGGAAAATGGAAGGACAAGAATTTAATGAAGA
 
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JMFS135H06+           GATGAGAATAATGAGTATAATTGTGTG                                 
JMFF022K19+           GATGAGAATAATGAGTATAATTGTGTGTAGTGATGGAATGACTTGGGTTGTTGGTTTAAT
                      ____________________________________________________________
consensus             GATGAGAATAATGAGTATAATTGTGTGTAGTGATGGAATGACTTGGGTTGTTGGTTTAAT