clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF021G22 | Sequence | 497 | 012877 (3) | ref|XP_004242591.1| | 5e-17 | PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Sol | 668 | 004232 (3) | gb|ACN26059.1| | 8e-79 | unknown [Zea mays] gb|AFW68477.1| hypothetical protein ZEAMMB73_483363 [Zea mays |
JMSF011K23 | Sequence | 356 | 012877 (3) | ref|XP_004242591.1| | 8e-08 | PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Sol | 723 | 004232 (3) | emb|CAN75999.1| | 2e-95 | hypothetical protein VITISV_019163 [Vitis vinifera] |
JMSF016C18 | Sequence | 471 | 012877 (3) | ref|XP_004242591.1| | 9e-18 | PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic [Sol | 778 | 004232 (3) | ref|XP_004982730.1| | 2e-102 | PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplastic-like |
This contig is upended
. : . : . : . : . : . :
JMSF016C18+ TTTTTGAGCCAAACTGCAGCT
JMFF021G22+ TGAGCCAAACTGCAGCT
____________________________________________________________
consensus TTTTTGAGCCAAACTGCAGCT
. : . : . : . : . : . :
JMSF011K23+ ATCTGACAGCAA
JMSF016C18+ CTGGCAGTGGATAGGCAGCACCTGCAGAGCCAGTACCAACAAGTTCAGATCTGACAGCAA
JMFF021G22+ CTGGCAGTGGATAGGCAGCACCTGCAGAGCCAGTACCAACAAGTTCAGATCTGACAGCAA
____________________________________________________________
consensus CTGGCAGTGGATAGGCAGCACCTGCAGAGCCAGTACCAACAAGTTCAGATCTGACAGCAA
. : . : . : . : . : . :
JMSF011K23+ TATACCGTGGCAATCTATTGTGTTTGAACATATTATAATCTCCAGGCATTCGACCAAACT
JMSF016C18+ TATACCGTGGCAATCTATTGTGTTTGAACATATTATAATCTCCAGGCATTCGACCAAACT
JMFF021G22+ TATACCGTGGCAATCTATTGTGTTTGAACATATTATAATCTCCAGGCATTCGACCAAACT
____________________________________________________________
consensus TATACCGTGGCAATCTATTGTGTTTGAACATATTATAATCTCCAGGCATTCGACCAAACT
. : . : . : . : . : . :
JMSF011K23+ TCATTTCTGGGTAGGAAGAAGGCCAGGATGCACATGAGTGTATTCTTGTACTCGATGCTA
JMSF016C18+ TCATTTCTGGGTAGGAAGAAGGCCAGGATGCACATGAGTGTATTCTTGTACTCGATGCTA
JMFF021G22+ TCATTTCTGGGTAGGAAGAAGGCCAGGATGCACATGAGTGTATTCTTGTACTCGATGCTA
____________________________________________________________
consensus TCATTTCTGGGTAGGAAGAAGGCCAGGATGCACATGAGTGTATTCTTGTACTCGATGCTA
. : . : . : . : . : . :
JMSF011K23+ TATTATTAGTTCTTGAAATTCTCCAGATTGGTTGCTTAAAATAAGAGCAACGACAATAGT
JMSF016C18+ TATTATTAGTTCTTGAAATTCTCCAGATTGGTTGCTTAAAATAAGAGCAACGACAATAGT
JMFF021G22+ TATTATTAGTTCTTGAAATTCTCCAGATTGGCTGCTTAAAATAAGAGCAACGACAATAGT
____________________________________________________________
consensus TATTATTAGTTCTTGAAATTCTCCAGATTGGTTGCTTAAAATAAGAGCAACGACAATAGT
. : . : . : . : . : . :
JMSF011K23+ TTGCATAATGCACATTCGATTGCTGAATTAGAAATGGCGAAACGAGAACTTTTGCATCCT
JMSF016C18+ TTGCATAATGCACATTCGATTGCTGAATTAGAAATGGCGAAACGAGAACTTTTGCATCCT
JMFF021G22+ TTGCATAATGCACATTCGATTGCTGAATTAGAAATGGCGAAACGAGAACTTTTGCATCCT
____________________________________________________________
consensus TTGCATAATGCACATTCGATTGCTGAATTAGAAATGGCGAAACGAGAACTTTTGCATCCT
. : . : . : . : . : . :
JMSF011K23+ TTTCCCAGTAGTGGTGCGGCGGAAGGGATGGCCGGAAGTGGAAATTGTTGAATTTAGATT
JMSF016C18+ TTTCCCAGTAGTGGTGCGGCGGAAGGGATGGCCGGAAGTGGAAATTGTTGAATTTAGATT
JMFF021G22+ TTTCCCAGTAGTGGTGCGGCGGAAGGGATGGCCGGAAGTGGAAATTGTTGAATTTAGATT
____________________________________________________________
consensus TTTCCCAGTAGTGGTGCGGCGGAAGGGATGGCCGGAAGTGGAAATTGTTGAATTTAGATT
. : . : . : . : . : . :
JMSF011K23+ GGAATTTTCCAAATGAGACATCCATTCGTTTTTTCTTCAACTC
JMSF016C18+ GGAATTTTCCAAATGAGACATCCATTCGTTTTTTCTTCAACTCGCAGATTTACTCAGTTG
JMFF021G22+ GGAATTTTCCAAATGAGACATCCATTCGTTTTTTCTTCAACTCGCAGATTTACTCAGTTG
____________________________________________________________
consensus GGAATTTTCCAAATGAGACATCCATTCGTTTTTTCTTCAACTCGCAGATTTACTCAGTTG
. : . : . : . : . : . :
JMSF016C18+ ATTGCATTCTTCAATGGCTTTGGAAATCG
JMFF021G22+ ATTGCATTCTTCAATGGCTTTGGAAATCGGAAGCCTCGAAATTAGCGAGCGATTCCAGAT
____________________________________________________________
consensus ATTGCATTCTTCAATGGCTTTGGAAATCGGAAGCCTCGAAATTAGCGAGCGATTCCAGAT