Contig 012868:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018D24Sequence561012868 (2)ref|XP_009615624.1|3e-45PREDICTED: arginyl-tRNA--protein transferase 1-like [Nicotiana tomentosiformis]682002568 (2)ref|XP_009791245.1|7e-25PREDICTED: arginyl-tRNA--protein transferase 1-like [Nicotiana sylvestris]
JMSF036J09Sequence680012868 (2)ref|XP_010486873.1|9e-24PREDICTED: arginyl-tRNA--protein transferase 1-like isoform X2 [Camelina sativa687002568 (2)ref|XP_009791245.1|5e-64PREDICTED: arginyl-tRNA--protein transferase 1-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF036J09+               ATTCGAGATATACCTCTCCATCCGTTTCAATACTCGGCGTTGTTCTTTGGATGGAA
                      ____________________________________________________________
consensus                 ATTCGAGATATACCTCTCCATCCGTTTCAATACTCGGCGTTGTTCTTTGGATGGAA
 
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JMSF036J09+           CGAAACCACCAGCTTTGAGGCGGATGGTATAAGATGGACAGCATGTGCTTTCCATCTCGG
                      ____________________________________________________________
consensus             CGAAACCACCAGCTTTGAGGCGGATGGTATAAGATGGACAGCATGTGCTTTCCATCTCGG
 
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JMSF036J09+           GCTTGTATAAAAAACATCCCGATCTTCTCCACCCTCTATCTAGAAGAGCTGTATAAAAGG
                      ____________________________________________________________
consensus             GCTTGTATAAAAAACATCCCGATCTTCTCCACCCTCTATCTAGAAGAGCTGTATAAAAGG
 
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JMSF036J09+           AAGTACTAAATCCAAACTCCAACATAGTAGGTGAACAGTTTGACTAGGCAAAACGAATCA
                      ____________________________________________________________
consensus             AAGTACTAAATCCAAACTCCAACATAGTAGGTGAACAGTTTGACTAGGCAAAACGAATCA
 
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JMSF036J09+           AATTGGAACAGTAGAAAACGAAAGGATTGGTCCATTAGCATTCCTCAACTATGTTCCATA
                      ____________________________________________________________
consensus             AATTGGAACAGTAGAAAACGAAAGGATTGGTCCATTAGCATTCCTCAACTATGTTCCATA
 
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JMSF036J09+           GAAAAGACAAAATGTAGAGTATGGTAACCAACCTTGATAGTCATCCACAGTCAGACTGTT
JMFF018D24+                                           CTTGATAGTCATCCACAGTCAGACTGTT
                      ____________________________________________________________
consensus             GAAAAGACAAAATGTAGAGTATGGTAACCAACCTTGATAGTCATCCACAGTCAGACTGTT
 
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JMSF036J09+           TGCCCATAGTCCGTGTGATATACTGGTCCGACTACCAGATTTACAGTAGCCACACGAGCT
JMFF018D24+           TGCCCATAGTCCGTGTGATATACTGGTCCGACTACCAGATTTACAGTAGCCACACGAGCT
                      ____________________________________________________________
consensus             TGCCCATAGTCCGTGTGATATACTGGTCCGACTACCAGATTTACAGTAGCCACACGAGCT
 
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JMSF036J09+           TTTGCGGCGGCCGCAATCCATAACGACGCTCTCGCCTCTATTGTTCCCGGAACCGGCGGC
JMFF018D24+           TTTGCGGCGGCCGCAATCCATAACGACGCTCTCGCCTCTATTGTTCCCGGAACCGGCGGC
                      ____________________________________________________________
consensus             TTTGCGGCGGCCGCAATCCATAACGACGCTCTCGCCTCTATTGTTCCCGGAACCGGCGGC
 
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JMSF036J09+           GACGCCGCTGTTGCTGCTGCTGGCAACACTTCTCGTCTCCTTCTTGTCCGCCATCGCGAA
JMFF018D24+           GACGCCGCTGTTGCTGCTGCTGGCAACACTTCTCGTCTCCTTCTTGTCCGCCATCGCGAA
                      ____________________________________________________________
consensus             GACGCCGCTGTTGCTGCTGCTGGCAACACTTCTCGTCTCCTTCTTGTCCGCCATCGCGAA
 
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JMSF036J09+           TCTCGGTTCGTACTAGGGTTTCGTTTCGTTCCTCTCTATATGTAGACTCTCTGTACGCAC
JMFF018D24+           TCTCGGTTCGTACTAGGGTTTCGTTTCGTTCCTCTCTATATGTAGACTCTCTGTACGCAC
                      ____________________________________________________________
consensus             TCTCGGTTCGTACTAGGGTTTCGTTTCGTTCCTCTCTATATGTAGACTCTCTGTACGCAC
 
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JMSF036J09+           GATGAATTTCTCAGTGCCGACCGATGAACACGGACAACGTAGTCGTTAAGTCGCGGTCGC
JMFF018D24+           GATGAATTTCTCAGTGCCGACCGATGAACACGGACAACGTAGTCGTTAAGTCGCGGTCGC
                      ____________________________________________________________
consensus             GATGAATTTCTCAGTGCCGACCGATGAACACGGACAACGTAGTCGTTAAGTCGCGGTCGC
 
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JMSF036J09+           ACGGCGACATTAATACGCACATC                                     
JMFF018D24+           ACGGCGACATTAATACGCACATCGTTTTGATTACTAGTTGAAAGTTTGGAAATTTCAAAT
                      ____________________________________________________________
consensus             ACGGCGACATTAATACGCACATCGTTTTGATTACTAGTTGAAAGTTTGGAAATTTCAAAT