Contig 012860:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015G03Sequence526012860 (10)ref|XP_009613230.1|107PREDICTED: uncharacterized protein LOC104106393 [Nicotiana tomentosiformis]693012860 (10)ref|XP_009613230.1|108PREDICTED: uncharacterized protein LOC104106393 [Nicotiana tomentosiformis]
JMFN005P18Sequence576012860 (10)emb|CAN82364.1|4e-20hypothetical protein VITISV_027615 [Vitis vinifera]
JMFN015M19Sequence558012860 (10)emb|CAN82364.1|5e-20hypothetical protein VITISV_027615 [Vitis vinifera]
JMFN044H18Sequence616012860 (10)ref|XP_009613230.1|107PREDICTED: uncharacterized protein LOC104106393 [Nicotiana tomentosiformis]
JMSF002P23Sequence286012860 (10)ref|XP_009613230.1|82.4PREDICTED: uncharacterized protein LOC104106393 [Nicotiana tomentosiformis]656012860 (10)ref|XP_009613230.1|108PREDICTED: uncharacterized protein LOC104106393 [Nicotiana tomentosiformis]
JMSF036N20Sequence588012860 (10)emb|CAN82364.1|5e-20hypothetical protein VITISV_027615 [Vitis vinifera]535012860 (10)emb|CAN82364.1|3e-20hypothetical protein VITISV_027615 [Vitis vinifera]
JMSF037N20Sequence534012860 (10)emb|CAN82364.1|3e-20hypothetical protein VITISV_027615 [Vitis vinifera]

Alignment

This contig is upended


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JMSF036N20+                                                               TTTTGCAG
JMFN015M19+                                                                     AG
rJMSF002P23-                                                 GTGTGGCTAAAAGTTTTGCAG
rJMFF015G03-                                     TTATCTGACATTGTGTGGCTAAAAGTTTTGCAG
                      ____________________________________________________________
consensus                                        TTATCTGACATTGTGTGGCTAAAAGTTTTGCAG
 
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JMFN005P18+                         GAGAGGCAAAGATATCTTAGTTATATATATGTTGCCCCAACAGAAC
rJMSF036N20-                                                 TATATGTTGCCCCAACAGAAC
JMFN044H18+                     GAAAGAGAGGCAAAGATATCTTAGTTATATATATGTTGCCCCAACAGAAC
JMSF036N20+           GAGTAGATGAGAAAGAGAGGCAAAGATATCTTAGTTATATATATGTTGCCCCAACAGAAC
JMFN015M19+           GAGTAGATGAGAAAGAGAGGCAAAGATATCTTAGTTATATATATGTTGCCCCAACAGAAC
rJMSF002P23-          GAGTAGATGAGAAAGAGAGGCAAAGATATCTTAGTTATATATATGTTGCCCCAACAGAAC
rJMSF037N20-                                                  ATATGTTGCCCCAACAGAAC
rJMFF015G03-          GAGTAGATGAGAAAGAGAGGCAAAGATATCTTAGTTATATATATGTTGCCCCAACAGAAC
                      ____________________________________________________________
consensus             GAGTAGATGAGAAAGAGAGGCAAAGATATCTTAGTTATATATATGTTGCCCCAACAGAAC
 
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JMFN005P18+           AAATATACAAGACAAAACATGGAACCAATTCAAAAGCACATTGACCTTGATTATTGAAAA
rJMSF036N20-          AAATATACAAGACAAAACATGGAACCAATTCAAAAGCACATTGACCTTGATTATTGAAAA
JMFN044H18+           AAATATACAAGACAAAACATGGAACCAATTCAAAAGCACATTGACCTTGATTATTGAAAA
JMSF036N20+           AAATATACAAGACAAAACATGGAACCAATTCAAAAGCACATTGACCTTGATTATTGAAAA
JMFN015M19+           AAATATACAAGACAAAACATGGAACCAATTCAAAAGCACATTGACCTTGATTATTGAAAA
rJMSF002P23-          AAATATACAAGACAAAACATGGAACCAATTCAAAAGCACATTGACCTTGATTATTGAAAA
rJMSF037N20-          AAATATACAAGACAAAACATGGAACCAATTCAAAAGCACATTGACCTTGATTATTGAAAA
rJMFF015G03-          AAATATACAAGACAAAACATGGAACCAATTCAAAAGCACATTGACCTTGATTATTGAAAA
                      ____________________________________________________________
consensus             AAATATACAAGACAAAACATGGAACCAATTCAAAAGCACATTGACCTTGATTATTGAAAA
 
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JMFN005P18+           AGAACTCTGAACCAACCACCAGACTTGCCATAACTTCATTCTTCAGATTCCTCCAGGTAA
rJMSF036N20-          AGAACTCTGAACCAACCACCAGACTTGCCATAACTTCATTCTTCAGATTCCTCCAGGTAA
JMFN044H18+           AGAACTCTGAACCAACCACCAGACTTGCCATAACTTCATTCTTCAGATTCCTCCAGGTAA
JMSF036N20+           AGAACTCTGAACCAACCACCAGACTTGCCATAACTTCATTCTTCAGATTCCTCCAGGTAA
JMFN015M19+           AGAACTCTGAACCAACCACCAGACTTGCCATAACTTCATTCTTCAGATTCCTCCAGGTAA
rJMSF002P23-          AGAACTCTGAACCAACCACCAGACTTGCCATAACTTCATTCTTCAGATTCCTCCAGGTAA
rJMSF037N20-          AGAACTCTGAACCAACCACCAGACTTGCCATAACTTCATTCTTCAGATTCCTCCAGGTAA
rJMFF015G03-          AGAACTCTGAACCAACCACCAGACTTGCCATAACTTCATTCTTCAGATTCCTCCAGGTAA
JMFF015G03+                         ACCACCAGACTTGCCATAACTTCATTCTTCAGATTCCTCCAGGTAA
                      ____________________________________________________________
consensus             AGAACTCTGAACCAACCACCAGACTTGCCATAACTTCATTCTTCAGATTCCTCCAGGTAA
 
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JMFN005P18+           GCTTCAACTCGGAGGAGGACGAAACCGACAGCGACTCCAACAAGAACAAGGCCAGGGATT
rJMSF036N20-          GCTTCAACTCGGAGGAGGACGAAACCGACAGCGACTCCAACAAGAACAAGGCCAGGGATT
JMFN044H18+           GCTTCAACTCGGAGGAGGACGAAACCGACAGCGACTCCAACAAGAACAAGGCCAGGGATT
JMSF036N20+           GCTTCAACTCGGAGGAGGACGAAACCGACAGCGACTCCAACAAGAACAAGGCCAGGGATT
JMFN015M19+           GCTTCAACTCGGAGGAGGACGAAACCGACAGCGACTCCAACAAGAACAAGGCCAGGGATT
rJMSF002P23-          GCTTCAACTCGGAGGAGGACGAAACCGACAGCGACTCCAACAAGAACAAGGCCAGGGATT
rJMSF037N20-          GCTTCAACTCGGAGGAGGACGAAACCGACAGCGACTCCAACAAGAACAAGGCCAGGGATT
rJMFF015G03-          GCTTCAACTCGGAGGAGGACGAAACCGACAGCGACTCCAACAAGAACAAGGCCAGGGATT
JMFF015G03+           GCTTCAACTCGGAGGAGGACGAAACCGACAGCGACTCCAACAAGAACAAGGCCAGGGATT
                      ____________________________________________________________
consensus             GCTTCAACTCGGAGGAGGACGAAACCGACAGCGACTCCAACAAGAACAAGGCCAGGGATT
 
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JMFN005P18+           ATGGCAGCAATCCTGAAAATCTCGGCGATGGCATTGCAGCTTGCAGAGAGAGCTCCACCG
rJMSF036N20-          ATGGCAGCAATCCTGAAAATCTCGGCGATGGCATTGCAGCTTGCAGAGAGAGCTCCACCG
JMFN044H18+           ATGGCAGCAATCCTGAAAATCTCGGCGATGGCATTGCAGCTTGCAGAGAGAGCTCCACCG
JMSF036N20+           ATGGCAGCAATCCTGAAAATCTCGGCGATGGCATTGCAGCTTGCAGAGAGAGCTCCACCG
JMFN015M19+           ATGGCAGCAATCCTGAAAATCTCGGCGATGGCATTGCAGCTTGCAGAGAGAGCTCCACCG
rJMSF002P23-          ATGGCAGCAATCCTGAAAATCTCGGCGATGGCATTGCAGCTTGCAGAGAGAGCTCCACCG
rJMSF037N20-          ATGGCAGCAATCCTGAAAATCTCGGCGATGGCATTGCAGCTTGCAGAGAGAGCTCCACCG
rJMFF015G03-          ATGGCAGCAATCCTGAAAATCTCGGCGATGGCATTGCAGCTTGCAGAGAGAGCTCCACCG
JMFF015G03+           ATGGCAGCAATCCTGAAAATCTCGGCGATGGCATTGCAGCTTGCAGAGAGAGCTCCACCG
                      ____________________________________________________________
consensus             ATGGCAGCAATCCTGAAAATCTCGGCGATGGCATTGCAGCTTGCAGAGAGAGCTCCACCG
 
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JMFN005P18+           CCATTACCCTTGCCTCGTGGTCTCAGTGAGCTTACAATCTTTGCAAACGAGTGGTCAGCG
rJMSF036N20-          CCATTACCCTTGCCTCGTGGTCTCAGTGAGCTTACAATCTTTGCAAACGAGTGGTCAGCG
JMSF002P23+                                                         ACGAGTGGTCAGCG
JMFN044H18+           CCATTACCCTTGCCTCGTGGTCTCAGTGAGCTTACAATCTTTGCAAACGAGTGGTCAGCG
JMSF036N20+           CCATTACCCTTGCCTCGTGGTCTCAGTGAGCTTACAATCTTTGCAAACGAGTGGTCAGCG
JMFN015M19+           CCATTACCCTTGCCTCGTGGTCTCAGTGAGCTTACAATCTTTGCAAACGAGTGGTCAGCG
rJMSF002P23-          CCATTACCCTTGCCTCGTGGTCTCAGTGAGCTTACAATCTTTGCAAACGAGTGGTCAGCG
rJMSF037N20-          CCATTACCCTTGCCTCGTGGTCTCAGTGAGCTTACAATCTTTGCAAACGAGTGGTCAGCG
rJMFF015G03-          CCATTACCCTTGCCTCGTGGTCTCAGTGAGCTTACAATCTTTGCAAACGAGTGGTCAGCG
JMFF015G03+           CCATTACCCTTGCCTCGTGGTCTCAGTGAGCTTACAATCTTTGCAAACGAGTGGTCAGCG
                      ____________________________________________________________
consensus             CCATTACCCTTGCCTCGTGGTCTCAGTGAGCTTACAATCTTTGCAAACGAGTGGTCAGCG
 
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JMFN005P18+           CAAACAGGGACGCCTAATGCGGCAACATGGTTATGCGCCTTGAGGCCTTCAAATGAATTC
rJMSF036N20-          CAAACAGGGACGCCTAATGCGGCAACATGGTTATGCGCCTTGAGGCCTTCAAATGAATTC
JMSF002P23+           CAAACAGGGACGCCTAATGCGGCAACATGGTTATGCGCCTTGAGGCCTTCAAATGAATTC
JMFN044H18+           CAAACAGGGACGCCTAATGCGGCAACATGGTTATGCGCCTTGAGGCCTTCAAATGAATTC
JMSF036N20+           CAAACAGGGACGCCTAATGCGGCAACATGGTTATGCGCCTTGAGGCCTTCAAATGAATTC
JMFN015M19+           CAAACAGGGACGCCTAATGCGGCAACATGGTTATGCGCCTTGAGGCCTTCAAATGAATTC
rJMSF002P23-          CAAACAGGGACGCCTAATGCGGCAACATGGTTATGCGCCTTGAGGCCTTCAAATGAATTC
rJMSF037N20-          CAAACAGGGACGCCTAATGCGGCAACATGGTTATGCGCCTTGAGGCCTTCAAATGAATTC
rJMFF015G03-          CAAACAGGGACGCCTAATGCGGCAACATGGTTATGCGCCTTGAGGCCTTCAAATGAATTC
JMFF015G03+           CAAACAGGGACGCCTAATGCGGCAACATGGTTATGCGCCTTGAGGCCTTCAAATGAATTC
                      ____________________________________________________________
consensus             CAAACAGGGACGCCTAATGCGGCAACATGGTTATGCGCCTTGAGGCCTTCAAATGAATTC
 
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JMFN005P18+           AGCCCTCTAATGTACCTCACTTTGGTGCTTCTTCTCTGGGAAAACCTGTTGGTCTTTGCG
rJMSF036N20-          AGCCCTCTAATGTACCTCACTTTGGTGCTTCTTCTCTGGGAAAACCTGTTGGTCTTTGCG
JMSF002P23+           AGCCCTCTAATGTACCTCACTTTGGTGCTTCTTCTCTGGGAAAACCTGTTGGTCTTTGCG
JMFN044H18+           AGCCCTCTAATGTACCTCACTTTGGTGCTTCTTCTCTGGGAAAACCTGTTGGTCTTTGCG
JMSF036N20+           AGCCCTCTAATGTACCTCACTTTGGTGCTTCTTCTCTGGGAAAACCTGTTGGTCTTTGCG
JMFN015M19+           AGCCCTCTAATGTACCTCACTTTGGTGCTTCTTCTCTGGGAAAACCTGTTGGTCTTTGCG
rJMSF002P23-          AGCCCTCTAATGTACCTCACTTTGGTGCTTCTTCTCTGGGAAAACCTGTTGGTCTTTGCG
rJMSF037N20-          AGCCCTCTAATGTACCTCACTTTGGTGCTTCTTCTCTGGGAAAACCTGTTGGTCTTTGCG
rJMFF015G03-          AGCCCTCTAATGTACCTCACTTTGGTGCTTCTTCTCTGGGAAAACCTGTTGGTCTTTGCG
JMFF015G03+           AGCCCTCTAATGTACCTCACTTTGGTGCTTCTTCTCTGGGAAAACCTGTTGGTCTTTGCG
                      ____________________________________________________________
consensus             AGCCCTCTAATGTACCTCACTTTGGTGCTTCTTCTCTGGGAAAACCTGTTGGTCTTTGCG
 
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JMFN005P18+           GCGACAACCATCGCCGCGGGTGAAAGGGTAGCCGAGGCTGATGCTGCTGCCGTAGCCATT
rJMSF036N20-          GCGACAACCATCGCCGCGGGTGAAAGGGTAGCCGAGGCTGATGCTGCTGCCGTAGCCATT
JMSF002P23+           GCGACAACCATCGCCGCGGGTGAAAGGGTAGCCGAGGCTGATGCTGCTGCCGTAGCCATT
JMFN044H18+           GCGACAACCATCGCCGCGGGTGAAAGGGTAGCCGAGGCTGATGCTGCTGCCGTAGCCATT
JMSF036N20+           GCGACAACCATCGCCGCGGGTGAAAGGGTAGCCGAGGCTGATGCTGCTGCCGTAGCCATT
JMFN015M19+           GCGACAACCATCGCCGCGGGTGAAAGGGTAGCCGAGGCTGATGCTGCTGCCGTAGCCATT
rJMSF002P23-          GCGACAACCATCGCCGCGGGTGAAAGGGTAGCCGAGGCTGATGCTGCTGCCGTAGCCATT
rJMSF037N20-          GCGACAACCATCGCCGCGGGTGAAAGGGTAGCCGAGGCTGATGCTGCTGCCGTAGCCATT
rJMFF015G03-          GCGACAACCATCGCCGCGGGTGAAAGGGTAGCCGAGGCTGATGCTGCTGCCGTAGCCATT
JMFF015G03+           GCGACAACCATCGCCGCGGGTGAAAGGGTAGCCGAGGCTGATGCTGCTGCCGTAGCCATT
                      ____________________________________________________________
consensus             GCGACAACCATCGCCGCGGGTGAAAGGGTAGCCGAGGCTGATGCTGCTGCCGTAGCCATT
 
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JMFN005P18+           ATTTTCTGCTCCAAAACCTGTTTGGGATGGCTTGTGGATTGCTCTAA             
rJMSF036N20-          ATTTTCTGCTCCAAAACCTGTTTGGGATGGCT                            
JMSF002P23+           ATTTTCTGCTCCAAAACCTGTTTGGGATGGCTTGTGGATTGCTCTAAGTTTGCCAAAGTA
JMFN044H18+           ATTTTCTGCTCCAAAACCTGTTTGGGATGGCTTGTGGATTGCTCTAAGTTTGCCAAAGTA
JMSF036N20+           ATTTTCTGCTCCAAAACCTGTTTGGGATGGCT                            
JMFN015M19+           ATTTTCTGCTCCAAAA                                            
rJMSF002P23-          ATTTTCTGCTCCAAAACCTGTTTGGGATGGCTTGTGGATTGCTCTAAGTTTGCCAAAGTA
rJMSF037N20-          ATTTTCTGCTCCAAAACCTGTTTGGGATGGCT                            
rJMFF015G03-          ATTTTCTGCTCCAAAACCTGTTTGGGATGGCTTGTGGATTGCTCTAAGTTTGCCAAAGTA
JMFF015G03+           ATTTTCTGCTCCAAAACCTGTTTGGGATGGCTTGTGGATTGCTCTAAGTTTGCCAAAGTA
                      ____________________________________________________________
consensus             ATTTTCTGCTCCAAAACCTGTTTGGGATGGCTTGTGGATTGCTCTAAGTTTGCCAAAGTA
 
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JMSF002P23+           GAGAGATAATAAAAGAGTGAAC                                      
JMFN044H18+           GAGAGATAATAAAAGAGTGAACATGG                                  
rJMSF002P23-          GAGAGATAATAAAAGAGTGAACATGG                                  
rJMFF015G03-          GAGAGATAATAAAAGAGTGAACATGGTACACTGGTGTGAGGAGAGTGTGAGAATGAAATC
JMFF015G03+           GAGAGATAATAAAAGAGTGAACATGGTACACTGGTGTGAGGAGAGTGTGAGAATGAAATC
                      ____________________________________________________________
consensus             GAGAGATAATAAAAGAGTGAACATGGTACACTGGTGTGAGGAGAGTGTGAGAATGAAATC