Contig 012853:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014D18Sequence568012853 (2)800012853 (2)ref|XP_009630022.1|2e-68PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-                                       AAGTTCTTATTGACGGCCTGCAATCCAATTT
                      ____________________________________________________________
consensus                                          AAGTTCTTATTGACGGCCTGCAATCCAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          CTTACTGTTCTGCATATGCTTAAATATATTTACAGCTCTAGTCAACTTCCTAGCTTCTGT
                      ____________________________________________________________
consensus             CTTACTGTTCTGCATATGCTTAAATATATTTACAGCTCTAGTCAACTTCCTAGCTTCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          GAAGTAGTATATCATAGTATTGTAAAGTGCCTCAGAACCAATAGAGGGAACAGCAAGCAC
                      ____________________________________________________________
consensus             GAAGTAGTATATCATAGTATTGTAAAGTGCCTCAGAACCAATAGAGGGAACAGCAAGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          TTGATTGACAACAACATCCATCTCCTGATACATTTTCACTGCACCAAGCCTCTGTATGGT
                      ____________________________________________________________
consensus             TTGATTGACAACAACATCCATCTCCTGATACATTTTCACTGCACCAAGCCTCTGTATGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          TATGTGGAACGTTGAGGCATCATGCCTGAACCTATGTTGAGTTGATGCCCAGTTGAACAA
                      ____________________________________________________________
consensus             TATGTGGAACGTTGAGGCATCATGCCTGAACCTATGTTGAGTTGATGCCCAGTTGAACAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          TTCTAAACACACCAAAGGATCTTCTTCTACATTCATGACATTGAACAGCTCCTCAGGGGT
                      ____________________________________________________________
consensus             TTCTAAACACACCAAAGGATCTTCTTCTACATTCATGACATTGAACAGCTCCTCAGGGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          AAATCTAGGTGGAAGTTGAGATATTGCCCTTTGAACCCGGGATTCATCAAGAACAGGTTT
                      ____________________________________________________________
consensus             AAATCTAGGTGGAAGTTGAGATATTGCCCTTTGAACCCGGGATTCATCAAGAACAGGTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          GGCAGCAGCCAAAGCTCTTTTGCGCATCCTCCTTCTCAGAGACCTTGTTGGGGGGGCCCT
JMFF014D18+                                           TTCTCAGAGACCTTGTTGGGGGGGCCCT
                      ____________________________________________________________
consensus             GGCAGCAGCCAAAGCTCTTTTGCGCATCCTCCTTCTCAGAGACCTTGTTGGGGGGGCCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          CAGGCGTCGGATTGCATCAGAAGAATAGAAAGAAACTGGAATAAAGTTTATCATAGATGC
JMFF014D18+           CAGGCGTCGGATTGCATCAGAAGAATAGAAAGAAACTGGAATAAAGTTTATCATAGATGC
                      ____________________________________________________________
consensus             CAGGCGTCGGATTGCATCAGAAGAATAGAAAGAAACTGGAATAAAGTTTATCATAGATGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          ATTAAAACATTCTTTCGCCAAAAGCGTTACAGATTTTGACGAATTGTGTAATTGCCGCTG
JMFF014D18+           ATTAAAACATTCTTTCGCCAAAAGCGTTACAGATTTTGACGAATTGTGTAATTGCCGCTG
                      ____________________________________________________________
consensus             ATTAAAACATTCTTTCGCCAAAAGCGTTACAGATTTTGACGAATTGTGTAATTGCCGCTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          AAAATGGCATGTACTTGAGTAATGGGAATGGGCATTTATAAATAACTTCTCACATTTGGA
JMFF014D18+           AAAATGGCATGTACTTGAGTAATGGGAATGGGCATTTATAAATAACTTCTCACATTTGGA
                      ____________________________________________________________
consensus             AAAATGGCATGTACTTGAGTAATGGGAATGGGCATTTATAAATAACTTCTCACATTTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          GATCAAGGAAACACATACATTTGGATGATTTGCTATTACCATACCCCGATACATGGTTAC
JMFF014D18+           GATCAAGGAAACACATACATTTGGATGATTTGCTATTACCATACCCCGATACATGGTTAC
                      ____________________________________________________________
consensus             GATCAAGGAAACACATACATTTGGATGATTTGCTATTACCATACCCCGATACATGGTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          TTTACTGGAGCATAACAGCTGGAGGCAATGCCTGAGGAGCTGCAAGCTGCTGTCGTAGGA
JMFF014D18+           TTTACTGGAGCATAACAGCTGGAGGCAATGCCTGAGGAGCTGCAAGCTGCTGTCGTAGGA
                      ____________________________________________________________
consensus             TTTACTGGAGCATAACAGCTGGAGGCAATGCCTGAGGAGCTGCAAGCTGCTGTCGTAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF014D18-          TTTACGACTAGTCGGAGTGGACAGCGGTCGAGGGAGCTGCTGACTGA             
JMFF014D18+           TTTACGACTAGTCGGAGTGGACAGCGGTCGAGGGAGCTGCTGACTGAGACAAATACACGG
                      ____________________________________________________________
consensus             TTTACGACTAGTCGGAGTGGACAGCGGTCGAGGGAGCTGCTGACTGAGACAAATACACGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014D18+           CGAAGGCCGCCGCGATCCAGCGGCGGTGTGGCTGGGATTCCGCGAAGACGGAGTGGTCCG
                      ____________________________________________________________
consensus             CGAAGGCCGCCGCGATCCAGCGGCGGTGTGGCTGGGATTCCGCGAAGACGGAGTGGTCCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014D18+           GCGGCTTTCTCCTTGAAGTTTGCTTGAATGGTTGCTGAAATTTGAATGTGGGTTATGCGG
                      ____________________________________________________________
consensus             GCGGCTTTCTCCTTGAAGTTTGCTTGAATGGTTGCTGAAATTTGAATGTGGGTTATGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF014D18+           TAGAAGGTTGAAGCCGTGGATACTGAAGAGCTGCGTAGAAGATCGGAGAATACATAATAC
                      ____________________________________________________________
consensus             TAGAAGGTTGAAGCCGTGGATACTGAAGAGCTGCGTAGAAGATCGGAGAATACATAATAC