Contig 012850:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012N18Sequence556012850 (3)ref|XP_009792780.1|3e-80PREDICTED: cyclin-dependent kinase C-1-like [Nicotiana sylvestris] gb|AIE54287.1765020164ref|XP_010647356.1|1e-69PREDICTED: cyclin-dependent kinase C-1-like [Vitis vinifera]
JMFF043B13Sequence646012850 (3)ref|XP_009627964.1|1e-127PREDICTED: cyclin-dependent kinase C-1-like [Nicotiana tomentosiformis]383015967ref|XP_009792780.1|1e-11PREDICTED: cyclin-dependent kinase C-1-like [Nicotiana sylvestris] gb|AIE54287.1
JMFN041K22Sequence607012850 (3)ref|XP_009792780.1|2e-103PREDICTED: cyclin-dependent kinase C-1-like [Nicotiana sylvestris] gb|AIE54287.1

Alignment

This contig is upended


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JMFF043B13+                                         TCAGATTAGCATTCTGATCACCAGAAAAGG
                      ____________________________________________________________
consensus                                           TCAGATTAGCATTCTGATCACCAGAAAAGG
 
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JMFF043B13+           ATCTAGCCAGTCCAAAATCAGCAAGCTTCAGGTTGCCCTCATNATCTATGAGAAGGTTGG
                      ____________________________________________________________
consensus             ATCTAGCCAGTCCAAAATCAGCAAGCTTCAGGTTGCCCTCATNATCTATGAGAAGGTTGG
 
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JMFF043B13+           AACCTTTGATATCCCTATGAAGAACTTGGTTGACATGACAGTAATGAAGACCGGTGAGTA
JMFN041K22+                     ATCCCTATGAAGAACTTGGTTGACATGACAGTAATGAAGACCGGTGAGTA
                      ____________________________________________________________
consensus             AACCTTTGATATCCCTATGAAGAACTTGGTTGACATGACAGTAATGAAGACCGGTGAGTA
 
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JMFF043B13+           GCTGCTTCATGTAACATTTAATTTGTGGAATCGAGAATCTGAGTCCAGGACGATCTGCGA
JMFN041K22+           GCTGCTTCATGTAACATNTAATTTGTGGAATCGAGAATCTGAGTCCAGGACGATCTGCGA
JMFF012N18+                                                          GGACGATCAGCAA
                      ____________________________________________________________
consensus             GCTGCTTCATGTAACATTTAATTTGTGGAATCGAGAATCTGAGTCCAGGACGATCTGCGA
 
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JMFF043B13+           GGCCAGTCAAGTCATGGTCCATGTACTCAAACACCATATAAATGTTGCCCTTGTACTTAT
JMFN041K22+           GGCCAGTCAAGTCATGGTCCATGTACTCAAACACCATATAAATGTTGCCCTTGTACTTAT
JMFF012N18+           GACCAGTCAAGTCATGGTCCATGTACTCAAAAACCATATAAATGCTACCCTTGTACTTAT
                      ____________________________________________________________
consensus             GGCCAGTCAAGTCATGGTCCATGTACTCAAACACCATATAAATGTTGCCCTTGTACTTAT
 
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JMFF043B13+           TGTTATCTGTCCTTTCCGGCTCATCTCCTTCGGGGCCTTGGGAAGTCACAATCTCTTTCA
JMFN041K22+           TGTTATCTGTCCTTTCCGGCTCATCTCCTTCGGGGCCTTGGGAAGTCACAATCTCTTTCA
JMFF012N18+           TGTTATCTAGCTTCCCTTGCTCATCCCCTTCAGGGCCTTGAGATGTCACTATCTCTCTCA
                      ____________________________________________________________
consensus             TGTTATCTGTCCTTTCCGGCTCATCTCCTTCGGGGCCTTGGGAAGTCACAATCTCTTTCA
 
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JMFF043B13+           AATTGATTACATTTTCATGCTGTAATTTCTTTAGAATTTTGATTTCCCGAATGGCAGTTA
JMFN041K22+           ACTTGATTACATTTTCATGCTGTAATTTCTTTAGAATTTTGATTTCCCGAATGGCAGTTA
JMFF012N18+           GCTTAATGACATTTTCATGCTGCAACTTCTTTAGAATTTTTATCTCCCGAATTGCAGTTA
                      ____________________________________________________________
consensus             ACTTGATTACATTTTCATGCTGTAATTTCTTTAGAATTTTGATTTCCCGAATGGCAGTTA
 
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JMFF043B13+           TTGGGAACCCTTCTTTTTCATTGTCCATACGGATCTTCTTTAAAGCAACAATTTCTCCAG
JMFN041K22+           TTGGGAACCCTTCTTTTTCATTGTCCATACGGATCTTCTTTAAAGCAACAATTTCTCCAG
JMFF012N18+           TTGGAAACCCTTCTTTTTCATTGTCCATCCGGATCTTTTTTAAAGCAACTATTTCTCCAG
                      ____________________________________________________________
consensus             TTGGGAACCCTTCTTTTTCATTGTCCATACGGATCTTCTTTAAAGCAACAATTTCTCCAG
 
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JMFF043B13+           TTCTTTTTTCTCTAGCCATAAATACTTGCCCGTAAGTGCCTTCTCCAATTTGCTCCAGCT
JMFN041K22+           TTCTTTTTTCTCTAGCCATAAATACTTGCCCGTAAGTGCCTTCTCCAATTTGCTCCAGCT
JMFF012N18+           TTCTTTTTTCTTTGGCCATGAATACTTGTCCATAAGTGCCTTCTCCGATTTGCTCCAGTT
                      ____________________________________________________________
consensus             TTCTTTTTTCTCTAGCCATAAATACTTGCCCGTAAGTGCCTTCTCCAATTTGCTCCAGCT
 
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JMFF043B13+           TTTCGAAGCAATCCACGCTCCGAGACCCCCATACCGGAGACTCGTCCAGATTCAGCTGCC
JMFN041K22+           TTTCGAAGCAATCCACGCTCCGAGACCCCCATACCGGAGACTCGTCCAGATTCAGCTGCC
JMFF012N18+           TTTCGAAACAATCCACACTTCGCGACCCCCACACCGGCGATTCGTCCAGATTCAGCTGCC
                      ____________________________________________________________
consensus             TTTCGAAGCAATCCACGCTCCGAGACCCCCATACCGGAGACTCGTCCAGATTCAGCTGCC
 
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JMFF043B13+           CATA                                                        
JMFN041K22+           CATA                                                        
JMFF012N18+           CATAAGCCGCCACCGCCATCTCTCTTTCTCTCCCTCACTCTATATGTATGTATGACGGTA
                      ____________________________________________________________
consensus             CATAAGCCGCCACCGCCATCTCTCTTTCTCTCCCTCACTCTATATGTATGTATGACGGTA
 
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JMFF012N18+           GAAGATTAAATAAATAAATACAAGAAGAAGACGGACGAACGAACAAACGGAAAGGCTTTG
                      ____________________________________________________________
consensus             GAAGATTAAATAAATAAATACAAGAAGAAGACGGACGAACGAACAAACGGAAAGGCTTTG
 
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JMFF012N18+           GCGCGGAGAGGGCAACAGTATCAGTACATTGGACTATTGGAGGCGGAAGTAATGAAAGAT
                      ____________________________________________________________
consensus             GCGCGGAGAGGGCAACAGTATCAGTACATTGGACTATTGGAGGCGGAAGTAATGAAAGAT