| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF011J15 | Sequence | 519 | 012848 (5) | ref|XP_009592052.1| | 2e-05 | PREDICTED: pyruvate kinase isozyme A, chloroplastic [Nicotiana tomentosiformis] | 695 | 005545 (5) | ref|XP_008353310.1| | 2e-125 | PREDICTED: LOW QUALITY PROTEIN: pyruvate kinase isozyme A, chloroplastic-like [ |
| JMFF045B21 | Sequence | 637 | 012848 (5) | ref|XP_009592052.1| | 2e-30 | PREDICTED: pyruvate kinase isozyme A, chloroplastic [Nicotiana tomentosiformis] | 621 | 005545 (5) | ref|XP_011091081.1| | 1e-102 | PREDICTED: pyruvate kinase isozyme A, chloroplastic [Sesamum indicum] |
| JMFF047J22 | Sequence | 558 | 012848 (5) | ref|XP_009592052.1| | 2e-34 | PREDICTED: pyruvate kinase isozyme A, chloroplastic [Nicotiana tomentosiformis] | 522 | 005545 (5) | ref|XP_011091081.1| | 3e-81 | PREDICTED: pyruvate kinase isozyme A, chloroplastic [Sesamum indicum] |
| JMFF048B03 | Sequence | 391 | 012848 (5) | ref|XP_006362155.1| | 1e-07 | PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Solanum tuberosum] | 253 | 005545 (5) | ref|XP_002311649.2| | 1e-20 | pyruvate phosphotransferase family protein [Populus trichocarpa] gb|EEE89016.2| |
| JMSF008D15 | Sequence | 242 | 012848 (5) | 774 | 005545 (5) | ref|XP_011091081.1| | 9e-148 | PREDICTED: pyruvate kinase isozyme A, chloroplastic [Sesamum indicum] | |||
This contig is upended
. : . : . : . : . : . :
JMFF047J22+ AGCCACGTTCATCCCGCCGACGGCCAACGCCTCGAGCTGCTCGAACCCGCAGG
JMFF045B21+ ATCCCGCCGACGGCCAACGCCTCGAGCTGCTCGAACCCGCAGG
____________________________________________________________
consensus AGCCACGTTCATCCCGCCGACGGCCAACGCCTCGAGCTGCTCGAACCCGCAGG
. : . : . : . : . : . :
JMFF047J22+ TGGCGGGCCCAATGGTGCACACCAGCTTAGTCCGCCTCGTGCTCCGGAACCCATTCTCTT
JMFF045B21+ TGGCGGGCCCAATGGTGCACACCAGCTTAGTCCGCCTCGTGCTCCGGAACCCATTCTCTT
____________________________________________________________
consensus TGGCGGGCCCAATGGTGCACACCAGCTTAGTCCGCCTCGTGCTCCGGAACCCATTCTCTT
. : . : . : . : . : . :
JMFF047J22+ TCAGCTCCGCCTCCGTCACCGCGTCCACGTCAATCGCCGCCAGCTCCTGCGTCGCAGCGG
JMFF048B03+ CGG
JMFF045B21+ TCAGCTCCGCCTCCGTCACCGCGTCCACGTCAATCGCCGCCAGCTCNTGCGTCGCAGCGG
JMFF011J15+ CGTCCACGTCAATCGCCGCCAGCTCCTGCGTCGCAGCGG
____________________________________________________________
consensus TCAGCTCCGCCTCCGTCACCGCGTCCACGTCAATCGCCGCCAGCTCCTGCGTCGCAGCGG
. : . : . : . : . : . :
JMFF047J22+ ATACCGCCCCCGCCCCGCCGGAGCCATTATCCGAGACCAGCACACGGGAGGACCGCAAAT
JMFF048B03+ ATACCGCCCCCGCCCCGCCGGAGCCATTATCCGAGACCAGCACACGGGAGGACCGCAAAT
JMFF045B21+ ATACCGCCCCCGCCCCGCCGGAGCCATTATCCGAGACCAGCACACGGGAGGACCGCAAAT
JMFF011J15+ ATACCGCCCCCGCCCCGCCGGAGCCATTATCCGAGACCAGCACACGGGAGGACCGCAAAT
____________________________________________________________
consensus ATACCGCCCCCGCCCCGCCGGAGCCATTATCCGAGACCAGCACACGGGAGGACCGCAAAT
. : . : . : . : . : . :
JMSF008D15+ GACGACGAACGACCGCGCCGGAGCNTTCGCCGGGACCC
JMFF047J22+ CGAGATCTGAATTCGAAGCTCTGACGACGAACGACCGCGCCGGAGCCTTCGCCGGGACCC
JMFF048B03+ CGAGATCTGAATTCGAAGCTCTGACGACGAACGACCGCGCCGGAGCCTTCGCCGGGACCC
JMFF045B21+ CGAGATCTGAATTCGAAGCTCTGACGACGAACGACCGCGCCGGAGCCTTCGCCGGGACCC
JMFF011J15+ CGAGATCTGAATTCGAAGCTCTGACGACGAACGACCGCGCCGGAGCCTTCGCCGGGACCC
____________________________________________________________
consensus CGAGATCTGAATTCGAAGCTCTGACGACGAACGACCGCGCCGGAGCCTTCGCCGGGACCC
. : . : . : . : . : . :
JMSF008D15+ GGAACCCCCGGGCCGGAGCAAACGACAGAGAAGGCTTGGAAACTGCAAATCCCGGCAGCG
JMFF047J22+ GGAACCCCCGGGCCGGAGCAAACGACAGAGAAGGCTTGGAAACTGCAAATCCCGGCAGCG
JMFF048B03+ GGAACCCCCGGGCCGGAGCAAACGACAGAGAAGGCTTGGAAACTGCAAATCCCGGCAGCG
JMFF045B21+ GGAACCCCCGGGCCGGAGCAAACGACAGAGAAGGCTTGGAAACTGCAAATCCCGGCAGCG
JMFF011J15+ GGAACCCCCGGGCCGGAGCAAACGACAGAGAAGGCTTGGAAACTGCAAATCCCGGCAGCG
____________________________________________________________
consensus GGAACCCCCGGGCCGGAGCAAACGACAGAGAAGGCTTGGAAACTGCAAATCCCGGCAGCG
. : . : . : . : . : . :
JMSF008D15+ ATGCAGAAGAGGAGGAGACAAAGAAGTTGAGAGCTCGCGACATTTTGCCCGGAAACCTCA
JMFF047J22+ ATGCAGAAGAGGAGGAGACAAAGAAGTTGAGAGCTCGCGACATTTTGCCCGGAAACCTCA
JMFF048B03+ ATGCAGAAGAGGAGGAGACAAAGAAGTTGAGAGCTCGCGACATTTTGCCCGGAAACCTCA
JMFF045B21+ ATGCAGAAGAGGAGGAGACAAAGAAGTTGAGAGCTCGCGACATTTTGCCCGGAAACCTCA
JMFF011J15+ ATGCAGAAGAGGAGGAGACAAAGAAGTTGAGAGCTCGCGACATTTTGCCCGGAAACCTCA
____________________________________________________________
consensus ATGCAGAAGAGGAGGAGACAAAGAAGTTGAGAGCTCGCGACATTTTGCCCGGAAACCTCA
. : . : . : . : . : . :
JMSF008D15+ ACAACTACCGGTTATCCGGCGGAGTATCTGAGAAACCCAGAAATTGAGCCAATGATGGGA
JMFF047J22+ ACAACTACCGGTTATCCGGCGGAGTATCTGAGAAACCCAGAAATTGAGCCAATGATGGGA
JMFF048B03+ ACAACTACCGGTTATCCGGCGGAGTATCTGAGAAACCCAGAAATTGAGCCAATGATGGGA
JMFF045B21+ ACAACTACCGGTTATCCGGCGGAGTATCTGAGAAACCCAGAAATTGAGCCAATGATGGGA
JMFF011J15+ ACAACTACCGGTTATCCGGCGGAGTATCTGAGAAACCCAGAAATTGAGCCAATGATGGGA
____________________________________________________________
consensus ACAACTACCGGTTATCCGGCGGAGTATCTGAGAAACCCAGAAATTGAGCCAATGATGGGA
. : . : . : . : . : . :
JMSF008D15+ GTTGAAACGACAGAGAAAAATGC
JMFF047J22+ GTTGAAACGACAGAGAAAAATGCGGGGCTGAGATGGCGAACTCAAGGCAAGAAAAAGGGG
JMFF048B03+ GTTGAAACGACAGAGAAAAATGCGGGGCTGAGATGGCGAACTCAAGGCAAGAAAAAGGGG
JMFF045B21+ GTTGAAACGACAGAGAAAAATGCGGGGCTGAGATGGCGAACTCAAGGCAAGAAAAAGGGG
JMFF011J15+ GTTGAAACGACAGAGAAAAATGCGGGGCTGAGATGGCGAACTCAAGGCAAGAAAAAGGGG
____________________________________________________________
consensus GTTGAAACGACAGAGAAAAATGCGGGGCTGAGATGGCGAACTCAAGGCAAGAAAAAGGGG
. : . : . : . : . : . :
JMFF047J22+ GGGGACGTGAGTGTCAATGTTC
JMFF048B03+ GGGGACGTGAGTGTCAATGTTC
JMFF045B21+ GGGGACGTGAGTGTCAATGTTCGACAATTTTGAGGTTCTTCTTCCCCAACCAGCGGAGTA
JMFF011J15+ GGGGACGTGAGTGTCAATGTTCGACAATTTTGAGGTTCTTCTTCCCCAACCAGCGGAGTA
____________________________________________________________
consensus GGGGACGTGAGTGTCAATGTTCGACAATTTTGAGGTTCTTCTTCCCCAACCAGCGGAGTA
. : . : . : . : . : . :
JMFF045B21+ TACTATGCTTTCAGCGACATTGATAGTTGATACTGTTGGGAATGTGATGGACAC
JMFF011J15+ TACTATGCTTTCAGCGACATTGATAGTTGATACTGTTGGGAATGTGATGGACACCGATGA
____________________________________________________________
consensus TACTATGCTTTCAGCGACATTGATAGTTGATACTGTTGGGAATGTGATGGACACCGATGA