Contig 012846:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011C18Sequence546012846 (7)ref|XP_009599172.1|5e-44PREDICTED: 50S ribosomal protein L11, chloroplastic [Nicotiana tomentosiformis]755012846 (7)ref|XP_009758554.1|1e-88PREDICTED: 50S ribosomal protein L11, chloroplastic [Nicotiana sylvestris]
JMFF012F21Sequence470012846 (7)ref|XP_009599172.1|8e-37PREDICTED: 50S ribosomal protein L11, chloroplastic [Nicotiana tomentosiformis]714012846 (7)ref|XP_009348693.1|1e-86PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Pyrus x bretschneider
JMFN043C02Sequence558012846 (7)ref|XP_009348693.1|4e-86PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Pyrus x bretschneider
JMSF044B13Sequence503012846 (7)ref|XP_009599172.1|1e-43PREDICTED: 50S ribosomal protein L11, chloroplastic [Nicotiana tomentosiformis]642012846 (7)ref|XP_009348693.1|3e-91PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Pyrus x bretschneider

Alignment

This contig is upended


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rJMSF044B13-                   GATCATTGCTACCATCAATCAAATTAAATAAGAACAGTAATAATACAGAAT
rJMFF012F21-                                             AATAAGAACAGTAATAATACAGAAT
rJMFF011C18-                                             AATAAGAACAGTAATAATACAGAAT
                      ____________________________________________________________
consensus                      GATCATTGCTACCATCAATCAAATTAAATAAGAACAGTAATAATACAGAAT
 
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rJMSF044B13-          CAGAAAGATGGGGTGGTCCAAGGGAATGATTTGGGTAGCTCTTCTTCTCAACATGCCTTA
rJMFF012F21-          CAGAAAGATGGGGTGGTCCAAGGGAATGATTTGGGTAGCTCTTCTTCTCAACATGCCTTA
rJMFF011C18-          CAGAAAGATGGGGTGGTCCAAGGGAATGATTTGGGTAGCTCTTCTTCTCAACATGCCTTA
                      ____________________________________________________________
consensus             CAGAAAGATGGGGTGGTCCAAGGGAATGATTTGGGTAGCTCTTCTTCTCAACATGCCTTA
 
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rJMSF044B13-          CTTCTCCAAATACTTCTAAATACAAATGGTGGTGGGGAAGGCCAGGGGAAAATTACAGGG
JMFN043C02+                            AAATACAAATGGTGGTGGGGAAGGCCAGGGGAAAATTACAGGG
rJMFF012F21-          CTTCTCCAAATACTTCTAAATACAAATGGTGGTGGGGAAGGCCAGGGGAAAATTACAGGG
rJMFF011C18-          CTTCTCCAAATACTTCTAAATACAAATGGTGGTGGGGAAGGCCAGGGGAAAATTACAGGG
                      ____________________________________________________________
consensus             CTTCTCCAAATACTTCTAAATACAAATGGTGGTGGGGAAGGCCAGGGGAAAATTACAGGG
 
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rJMSF044B13-          AAAACGAAAGAGAGAAGGTTTACAATTCTACTTTCACTTTAGGTTTAAGAATGGGAGGGT
JMFN043C02+           AAAACGAAAGAGAGAAGGTTTACAATTCTACTTTCACTTTAGGTTTAAGAATGGGAGGGT
rJMFF012F21-          AAAACGAAAGAGAGAAGGTTTACAATTCTACTTTCACTTTAGGTTTAAGAATGGGAGGGT
rJMFF011C18-          AAAACGAAAGAGAGAAGGTTTACAATTCTACTTTCACTTTAGGTTTAAGAATGGGAGGGT
                      ____________________________________________________________
consensus             AAAACGAAAGAGAGAAGGTTTACAATTCTACTTTCACTTTAGGTTTAAGAATGGGAGGGT
 
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rJMSF044B13-          CAACGTCGATGCCCATATTAGCTGCAGTGCCGGCTATAATCCTCATTGCTGACTCGATGC
JMFN043C02+           CAACGTCGATGCCCATATTAGCTGCAGTGCCGGCTATAATCCTCATTGCTGACTCGATGC
rJMFF012F21-          CAACGTCGATGCCCATATTAGCTGCAGTGCCGGCTATAATCCTCATTGCTGACTCGATGC
rJMFF011C18-          CAACGTCGATGCCCATATTAGCTGCAGTGCCGGCTATAATCCTCATTGCTGACTCGATGC
                      ____________________________________________________________
consensus             CAACGTCGATGCCCATATTAGCTGCAGTGCCGGCTATAATCCTCATTGCTGACTCGATGC
 
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rJMSF044B13-          TTGTACAGTTAAGGTCTGGCAACTTTTCTTGAGCAATTGCCCGCAACTGATCAACAGTCA
JMFN043C02+           TTGTACAGTTAAGGTCTGGCAACTTTTCTTGAGCAATTGCCCGCAACTGATCAACAGTCA
rJMFF012F21-          TTGTACAGTTAAGGTCTGGCAACTTTTCTTGAGCAATTGCCCGCAACTGATCAACAGTCA
rJMFF011C18-          TTGTACAGTTAAGGTCTGGCAACTTTTCTTGAGCAATTGCCCGCAACTGATCAACAGTCA
                      ____________________________________________________________
consensus             TTGTACAGTTAAGGTCTGGCAACTTTTCTTGAGCAATTGCCCGCAACTGATCAACAGTCA
 
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rJMSF044B13-          CCTTCCCCACTTTCTCCATCTGCGGGTCCTTGGATCCTTTCTCCGCTCCTGCTGCCTTAA
JMFN043C02+           CCTTCCCCACTTTCTCCATCTGCGGGTCCTTGGATCCTTTCTCCGCTCCTGCTGCCTTAA
rJMFF012F21-          CCTTCCCCACTTTCTCCATCTGCGGGTCCTTGGATCCTTTCTCCGCTCCTGCTGCCTTAA
rJMFF011C18-          CCTTCCCCACTTTCTCCATCTGCGGGTCCTTGGATCCTTTCTCCGCTCCTGCTGCCTTAA
JMSF044B13+                                                                   TTAA
JMFF011C18+                                                                 CCTTAA
                      ____________________________________________________________
consensus             CCTTCCCCACTTTCTCCATCTGCGGGTCCTTGGATCCTTTCTCCGCTCCTGCTGCCTTAA
 
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rJMSF044B13-          GTAACAAAACTGAAGCAGGTGGCGTTTTCAAGACAAAAGTGAAGCTTCTATCATCATAGA
JMFN043C02+           GTAACAAAACTGAAGCAGGTGGCGTTTTCAAGACAAAAGTGAAGCTTCTATCATCATAGA
rJMFF012F21-          GTAACAAAACTGAAGCAGGTGGCGTTTTCAAGACAAAAGTGAAGCTTCTATCATCATAGA
rJMFF011C18-          GTAACAAAACTGAAGCAGGTGGCGTTTTCAAGACAAAAGTGAAGCTTCTATCATCATAGA
JMFF012F21+                                       CAAGACAAAAGTGAAGCTTCTATCATCATAGA
JMSF044B13+           GTAACAAAACTGAAGCAGGTGGCGTTTTCAAGACAAAAGTGAAGCTTCTATCATCATAGA
JMFF011C18+           GTAACAAAACTGAAGCAGGTGGCGTTTTCAAGACAAAAGTGAAGCTTCTATCATCATAGA
                      ____________________________________________________________
consensus             GTAACAAAACTGAAGCAGGTGGCGTTTTCAAGACAAAAGTGAAGCTTCTATCATCATAGA
 
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rJMSF044B13-          CTGTGATTTCAACAGGGATGATATAACCGGGTTTATCAGCAGTCCTGGCATTGTAGTCCT
JMFN043C02+           CTGTGATTTCAACAGGGATGATATAACCGGGTTTATCAGCAGTCCTGGCATTGTAGTCCT
rJMFF012F21-          CTGTGATTTCAACAGGGATGATATAACCGGGTTTATCAGCAGTCCTGGCATTGTAGTCCT
rJMFF011C18-          CTGTGATTTCAACAGGGATGATATAACCGGGTTTATCAGCAGTCCTGGCATTGTAGTCCT
JMFF012F21+           CTGTGATTTCAACAGGGATGATATAACCGGGTTTATCAGCAGTCCTGGCATTGTAGTCCT
JMSF044B13+           CTGTGATTTCAACAGGGATGATATAACCGGGTTTATCAGCAGTCCTGGCATTGTAGTCCT
JMFF011C18+           CTGTGATTTCAACAGGGATGATATAACCGGGTTTATCAGCAGTCCTGGCATTGTAGTCCT
                      ____________________________________________________________
consensus             CTGTGATTTCAACAGGGATGATATAACCGGGTTTATCAGCAGTCCTGGCATTGTAGTCCT
 
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rJMSF044B13-          TACAGAAAGCCATAATGTTGACACCCTTAGAACCCAATGCCGGCCCAACAGGTGGAGCCG
JMFN043C02+           TACAGAAAGCCATAATGTTGACACCCTTAGAACCCAATGCCGGCGCAACAGGTGGAGCCG
rJMFF012F21-          TACAGAAAGCCATAATGTTGACACCCTTAGAACCCAATGCCGGCCCAACAGGTGGAGCCG
rJMFF011C18-          TACAGAAAGCCATAATGTTGACACCCTTAGAACCCAATGCCGGCCCAACAGGTGGAGCCG
JMFF012F21+           TACAGAAAGCCATAATGTTGACACCCTTAGAACCCAATGCCGGCCCAACAGGTGGAGCCG
JMSF044B13+           TACAGAAAGCCATAATGTTGACACCCTTAGAACCCAATGCCGGCCCAACAGGTGGAGCCG
JMFF011C18+           TACAGAAAGCCATAATGTTGACACCCTTAGAACCCAATGCCGGCCCAACAGGTGGAGCCG
                      ____________________________________________________________
consensus             TACAGAAAGCCATAATGTTGACACCCTTAGAACCCAATGCCGGCCCAACAGGTGGAGCCG
 
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rJMSF044B13-          GCGTCGCCTTCCCTGCCTCCAGAGCCAGCTTTACCACCCC                    
JMFN043C02+           GCGTCGCCTTCCCTGCCTCCAGAGCCAGCTTTACCACCCCAGTAACTTTCTTGGCTTTTC
rJMFF012F21-          GCGTCGCCTTCCCTGCCTCCAGAGCCAGCTTTACCACCCCAGTAACTTTCTTGGCTTTTC
rJMFF011C18-          GCGTCGCCTTCCCTGCCTCCAGAGCCAGCTTTACCACCCCAGTAACTTTCTTGGCTTTTC
JMFF012F21+           GCGTCGCCTTCCCTGCCTCCAGAGCCAGCTTTACCACCCCAGTAACTTTCTTGGCTTTTC
JMSF044B13+           GCGTCGCCTTCCCTGCCTCCAGAGCCAGCTTTACCACCCCAGTAACTTTCTTGGCTTTTC
JMFF011C18+           GCGTCGCCTTCCCTGCCTCCAGAGCCAGCTTTACCACCCCAGTAACTTTCTTGGCTTTTC
                      ____________________________________________________________
consensus             GCGTCGCCTTCCCTGCCTCCAGAGCCAGCTTTACCACCCCAGTAACTTTCTTGGCTTTTC
 
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JMFN043C02+           CGGCGGCAGGCTTGGGAGGAGCCATGGCAAAGACA                         
rJMFF012F21-          CGGCGGCAGGCTTGGGAGGAGCCATGGCAAAGACAGTGAGAGGCCTGGGTGAGGAAGTAG
rJMFF011C18-          CGGCGGCAGGCTTGGGAGGAGCCATGGCAAAGACAGTGAGAGGCCTGGGTGAGGAAGTAG
JMFF012F21+           CGGCGGCAGGCTTGGGAGGAGCCATGGCAAAGACAGTGAGAGGCCTGGGTGAGGAAGTAG
JMSF044B13+           CGGCGGCAGGCTTGGGAGGAGCCATGGCAAAGACAGTGAGAGGCCTGGGTGAGGAAGTAG
JMFF011C18+           CGGCGGCAGGCTTGGGAGGAGCCATGGCAAAGACAGTGAGAGGCCTGGGTGAGGAAGTAG
                      ____________________________________________________________
consensus             CGGCGGCAGGCTTGGGAGGAGCCATGGCAAAGACAGTGAGAGGCCTGGGTGAGGAAGTAG
 
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rJMFF012F21-          GAGAAACATGATTATTGCGACTGCG                                   
rJMFF011C18-          GAGAAACATGATTATTGCGACTGCGAANGAATTGCAGAGAGATGCCTGGGTTTGAAAACN
JMFF012F21+           GAGAAACATGATTATTGCGACTGCGAAGGAATTGCAGAGAGATGCCTGGGTTTGAAGACA
JMSF044B13+           GAGAAACATGATTATTGCGACTGCGAAGGAATTGCAGAGAGATGCCTGGGTTTGAAGACA
JMFF011C18+           GAGAAACATGATTATTGCGACTGCGAAGGAATTGCAGAGAGATGCCTGGGTTTGAAGACA
                      ____________________________________________________________
consensus             GAGAAACATGATTATTGCGACTGCGAAGGAATTGCAGAGAGATGCCTGGGTTTGAAGACA
 
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rJMFF011C18-          AATTGAACGA                                                  
JMFF012F21+           AATTGAACGAAGACCGGAAAGATGAGAGCTTTCTCTCATTTCCGCGAACTTGGAGACCCG
JMSF044B13+           AATTGAACGAAGACCGGAAAGATGAGAGCTTTCTCTCATTTCCGCGAACTTGGAGACCCG
JMFF011C18+           AATTGAACGAAGACCGGAAAGATGAGAGCTTTCTCTCATTTCCGCGAACTTGGAGACCCG
                      ____________________________________________________________
consensus             AATTGAACGAAGACCGGAAAGATGAGAGCTTTCTCTCATTTCCGCGAACTTGGAGACCCG
 
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JMFF012F21+           TTGACGATAAAGAAACAGCCATTCCTGCCGGAACTCGAGACCCACTTCTTCAACACCTTC
JMSF044B13+           TTGACGATAAAGAAACAGCCATTCCTGCCGGAACTCGAGACCCACTTCTTCAACACCTTC
JMFF011C18+           TTGACGATAAAGAAACAGCCATTCCTGCCGGAACTCGAGACCCACTTCTTCAACACCTTC
                      ____________________________________________________________
consensus             TTGACGATAAAGAAACAGCCATTCCTGCCGGAACTCGAGACCCACTTCTTCAACACCTTC
 
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JMFF012F21+           AAATTTTAGCACGCCGGT                                          
JMSF044B13+           AAATTTTAGCACGACGGT                                          
JMFF011C18+           AAATTTTAGCACGACGGTGAAGTGGATAATACACCACACCCCACACCTCTTCCTATCGAT
                      ____________________________________________________________
consensus             AAATTTTAGCACGACGGTGAAGTGGATAATACACCACACCCCACACCTCTTCCTATCGAT