Contig 012843:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010L02Sequence553012843 (2)emb|CDP08132.1|4e-10unnamed protein product [Coffea canephora]774012843 (2)ref|XP_006353113.1|8e-49PREDICTED: polygalacturonase-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF010L02-                                                       ATCTTTGTTATATAT
                      ____________________________________________________________
consensus                                                          ATCTTTGTTATATAT
 
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rJMFF010L02-          GTTTGTGTGCAGCATTGGGAGTTTAGGTTGGAAAGAGAAGGAGGGTGGAGTACAAAATGT
                      ____________________________________________________________
consensus             GTTTGTGTGCAGCATTGGGAGTTTAGGTTGGAAAGAGAAGGAGGGTGGAGTACAAAATGT
 
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rJMFF010L02-          GACGGTTAAAACCGCTACTTTTACCGGCACTCAAAATGGGTTGAGGATCAAAACTTGGGC
                      ____________________________________________________________
consensus             GACGGTTAAAACCGCTACTTTTACCGGCACTCAAAATGGGTTGAGGATCAAAACTTGGGC
 
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rJMFF010L02-          AAGGCCAAGCAATGGATTTGTGAAAGATGTTGTTTTCCAACATGCAGTCATGTCTAACGT
                      ____________________________________________________________
consensus             AAGGCCAAGCAATGGATTTGTGAAAGATGTTGTTTTCCAACATGCAGTCATGTCTAACGT
 
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rJMFF010L02-          TAAACACCCCATCATCATCGACCAAAATTATTGTCCTAACAACCAAAACTGTCCTCATCA
                      ____________________________________________________________
consensus             TAAACACCCCATCATCATCGACCAAAATTATTGTCCTAACAACCAAAACTGTCCTCATCA
 
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rJMFF010L02-          GGTACTGTCAATCATGCATATTCCTTAGCTTGTTCCACCCCCCACCCTCAAAATTTCATG
JMFF010L02+                                                          TCAAAATTTCATG
                      ____________________________________________________________
consensus             GGTACTGTCAATCATGCATATTCCTTAGCTTGTTCCACCCCCCACCCTCAAAATTTCATG
 
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rJMFF010L02-          GTACATCAGCGACGGAAGTGGCGATGACGTTCGAGTGCAGCAAGACAGAACCGTG-CCGT
JMFF010L02+           GTACATCAGCGACGGAAGTGGCGATGACGTTCGAGTGCAGCAAGACAGAACCGTGCCCGT
                      ____________________________________________________________
consensus             GTACATCAGCGACGGAAGTGGCGATGACGTTCGAGTGCAGCAAGACAGAACCGTGCCCGT
 
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rJMFF010L02-          GGCATAACGTTGGACAATATAAACTTGACGTACAAAGATCACCCGGCTCAAGCCTCCTGC
JMFF010L02+           GGCATAACGTTGGACAATATAAACTTGACGTACAAAGATCACCCGGCTCAAGCCTCCTGC
                      ____________________________________________________________
consensus             GGCATAACGTTGGACAATATAAACTTGACGTACAAAGATCACCCGGCTCAAGCCTCCTGC
 
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rJMFF010L02-          TCTAATGCTGGAGGGACGTCTTCCGGTTTAGTTACGCCCACGAGCTGCCTCTGATCTAAG
JMFF010L02+           TCTAATGCTGGAGGGACGTCTTCCGGTTTAGTTACGCCCACGAGCTGCCTCTGATCTAAG
                      ____________________________________________________________
consensus             TCTAATGCTGGAGGGACGTCTTCCGGTTTAGTTACGCCCACGAGCTGCCTCTGATCTAAG
 
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rJMFF010L02-          CGCTTGCTCAAACGTTTGCACCGCCGGCGCTTCTGCTCTGAGGCGGTAGAGGGGCGTGAT
JMFF010L02+           CGCTTGCTCAAACGTTTGCACCGCCGGCGCTTCTGCTCTGAGGCGGTAGAGGGGCGTGAT
                      ____________________________________________________________
consensus             CGCTTGCTCAAACGTTTGCACCGCCGGCGCTTCTGCTCTGAGGCGGTAGAGGGGCGTGAT
 
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rJMFF010L02-          TCTTGTGATTGTCAGTGAAAATGACGGAATTGAGGTCTGAAGGAGACGAGAATCGACTCG
JMFF010L02+           TCTTGTGATTGTCAGTGAAAATGACGGAATTGAGGTCTGAAGGAGACGAGAATCGACTCG
                      ____________________________________________________________
consensus             TCTTGTGATTGTCAGTGAAAATGACGGAATTGAGGTCTGAAGGAGACGAGAATCGACTCG
 
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rJMFF010L02-          GACAAGCAGTAAAATCCGAGTTGTTCTTTTGGATCATGGCTCCATCCTCGATGAGTCCGT
JMFF010L02+           GACAAGCAGTAAAATCCGAGTTGTTCTTTTGGATCATGGCTCCATCCTCGATGAGTCCGT
                      ____________________________________________________________
consensus             GACAAGCAGTAAAATCCGAGTTGTTCTTTTGGATCATGGCTCCATCCTCGATGAGTCCGT
 
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rJMFF010L02-          TTCTGAGGTGAGGTTGAATTACATTACATTTCCTCGCCTCTGATTTCAATCGATTTTCAT
JMFF010L02+           TTCTGAGGTGAGGTTGAATTACATTACATTTCCTCGCCTCTGATTTCAATCGATTTTCAT
                      ____________________________________________________________
consensus             TTCTGAGGTGAGGTTGAATTACATTACATTTCCTCGCCTCTGATTTCAATCGATTTTCAT
 
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rJMFF010L02-          GTCTTTCTGCATGCGTGTGAAATTGGAGTCCCTGCACATC                    
JMFF010L02+           GTCTTTCTGCATGCGTGTGAAATTGGAGTCCCTGCACATCAGAATGAAGATTTGATTTGA
                      ____________________________________________________________
consensus             GTCTTTCTGCATGCGTGTGAAATTGGAGTCCCTGCACATCAGAATGAAGATTTGATTTGA
 
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JMFF010L02+           ACTCCCGGTGGAATCCCCACCGTCCATCCACTCATCCGAGTCAAACTCACCTCCGCCCCC
                      ____________________________________________________________
consensus             ACTCCCGGTGGAATCCCCACCGTCCATCCACTCATCCGAGTCAAACTCACCTCCGCCCCC