Contig 012840:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010C08Sequence578012840 (4)ref|XP_009798568.1|4e-64PREDICTED: thioredoxin-like protein Clot [Nicotiana sylvestris]554012840 (4)ref|XP_009798568.1|3e-64PREDICTED: thioredoxin-like protein Clot [Nicotiana sylvestris]
JMSF008B08Sequence257012840 (4)ref|XP_006338899.1|3e-39PREDICTED: thioredoxin-like protein Clot-like [Solanum tuberosum]573012840 (4)ref|XP_006338899.1|1e-76PREDICTED: thioredoxin-like protein Clot-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF008B08-                                                         GATCGAAAATCCAT
rJMSF008B08+                                                        GATCGAAAATCCAT
                      ____________________________________________________________
consensus                                                           GATCGAAAATCCAT
 
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JMSF008B08-           ATCCGGGTGGAAAGAGAAGCACAGAAAATGCCTCTGAAAGTGTTGGACGCTACCGTAGCA
rJMSF008B08+          ATCCGGGTGGAAAGAGAAGCACAGAAAATGCCTCTGAAAGTGTTGGACGCTACCGTAGCA
rJMFF010C08+                              ACAGAAAATGCCTCTGAAAGTGTTGGACGCTACCGTAGCA
JMFF010C08-                               ACAGAAAATGCCTCTGAAAGTGTTGGACGCTACCGTAGCA
                      ____________________________________________________________
consensus             ATCCGGGTGGAAAGAGAAGCACAGAAAATGCCTCTGAAAGTGTTGGACGCTACCGTAGCA
 
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JMSF008B08-           ACATTCAATGGAGTGTTTGAGAAGTTCAAAGCCGAAGCCCCCAAAAACAAGGCCAATTTA
rJMSF008B08+          ACATTCAATGGAGTGTTTGAGAAGTTCAAAGCCGAAGCCCCCAAAAACAAGGCCAATTTA
rJMFF010C08+          ACATTCAATGGAGTGTTTGAGAAGTTCAAAGCCGAAGCCCCCAAAAACAAGGCCAATTTA
JMFF010C08-           ACATTCAATGGAGTGTTTGAGAAGTTCAAAGCCGAAGCCCCCAAAAACAAGGCCAATTTA
                      ____________________________________________________________
consensus             ACATTCAATGGAGTGTTTGAGAAGTTCAAAGCCGAAGCCCCCAAAAACAAGGCCAATTTA
 
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JMSF008B08-           ATCCTCTTCCTGGCGGACATTGAACCGTCCACCTCCCTTAGCTGGTGCCCCGATTGCGTG
rJMSF008B08+          ATCCTCTTCCTGGCGGACATTGAACCGTCCACCTCCCTTAGCTGGTGCCCCGATTGCGTG
rJMFF010C08+          ATCCTCTTCCTGGCGGACATTGAACCGTCCACCTCCCTTAGCTGGTGCCCCGATTGCGTG
JMFF010C08-           ATCCTCTTCCTGGCGGACATTGAACCGTCCACCTCCCTTAGCTGGTGCCCCGATTGCGTG
                      ____________________________________________________________
consensus             ATCCTCTTCCTGGCGGACATTGAACCGTCCACCTCCCTTAGCTGGTGCCCCGATTGCGTG
 
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JMSF008B08-           AGAGCTGAGCCGGTGATATACAAAAAGCTGGAAGCGTCATCTGATGATGTTGCGCTGCTG
rJMSF008B08+          AGAGCTGAGCCGGTGATATACAAAAAGCTGGAAGCGTCATCTGATGATGTTGCGCTGCTG
rJMFF010C08+          AGAGCTGAGCCGGTGATATACAAAAAGCTGGAAGCGTCATCTGATGATGTTGCGCTGCTG
JMFF010C08-           AGAGCTGAGCCGGTGATATACAAAAAGCTGGAAGCGTCATCTGATGATGTTGCGCTGCTG
                      ____________________________________________________________
consensus             AGAGCTGAGCCGGTGATATACAAAAAGCTGGAAGCGTCATCTGATGATGTTGCGCTGCTG
 
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JMSF008B08-           AAG                                                         
rJMSF008B08+          AAGGCTTATGTTGGAGACAGGCCAACATGGAGGAATCCACAGCATCCATGGAGGGTGGAT
rJMFF010C08+          AAGGCTTATGTTGGAGACAGGCCAACATGGAGGAATCCACAGCATCCATGGAGGGTGGAT
JMFF010C08-           AAGGCTTATGTTGGAGACAGGCCAACATGGAGGAATCCACAGCATCCATGGAGGGTGGAT
                      ____________________________________________________________
consensus             AAGGCTTATGTTGGAGACAGGCCAACATGGAGGAATCCACAGCATCCATGGAGGGTGGAT
 
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rJMSF008B08+          CCCAACTTCAATCTGAAAGGAGTTCCTACTTTAATCCGCTGGGAAGACGGTGCAGTCAAA
rJMFF010C08+          CCCAACTTCAATCTGAAAGGAGTTCCTACTTTAATCCGCTGGGAAGACGGTGC--TCAAA
JMFF010C08-           CCCAACTTCAATCTGAAAGGAGTTCCTACTTTAATCCGCTGGGAAGACGGTGC--TCAAA
                      ____________________________________________________________
consensus             CCCAACTTCAATCTGAAAGGAGTTCCTACTTTAATCCGCTGGGAAGACGGTGC--TCAAA
 
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rJMSF008B08+          GGTCGACTTGAAGACCATGAAGCCCACCTTGAGCACAAGATTGATAATCTTCTCGGTGGA
rJMFF010C08+          GGTCGACTTGAAGACCATGAAGCCCACCTTGAGCACAAGATTGATAATCTTCTCGGTGGA
JMFF010C08-           GGTCGACTTGAAGACCATGAAGCCCACCTTGAGCACAAGATTGATAATCTTCTCGGTGGA
                      ____________________________________________________________
consensus             GGTCGACTTGAAGACCATGAAGCCCACCTTGAGCACAAGATTGATAATCTTCTCGGTGGA
 
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rJMSF008B08+          AAGTAAACTCTACTGACTTCTTCGTACCAAAATAGGCAAAAAAACATTATAATTGCCCAT
rJMFF010C08+          AAGTAAACTCTACTGACTTCTTCGTACCAAAATAGGCAAAAAAACATTATAATTGCCCAT
JMFF010C08-           AAGTAAACTCTACTGACTTCTTCGTACCAAAATAGGCAAAAAAACATTATAATTGCCCAT
                      ____________________________________________________________
consensus             AAGTAAACTCTACTGACTTCTTCGTACCAAAATAGGCAAAAAAACATTATAATTGCCCAT
 
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rJMSF008B08+          TAATAAAATATGATCATGTTTCTGGCATATATACATTTTGCCTAGGAACCAACTTTGAAC
rJMFF010C08+          TAATAAAATATGATCATGTTTCTGGCATATATACATTTTGCCTAGGAACCAACTTTGAAC
JMFF010C08-           TAATAAAATATGATCATGTTTCTGGCATATATACATTTTGCCTAGGAACCAACTTTGAAC
                      ____________________________________________________________
consensus             TAATAAAATATGATCATGTTTCTGGCATATATACATTTTGCCTAGGAACCAACTTTGAAC
 
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rJMSF008B08+          AGCTTATCATATTTGATCT                                         
rJMFF010C08+          AGCTTATCATATTTGATCTTT                                       
JMFF010C08-           AGCTTATCATATTTGATCTTTTCAAGAATGGAAAAATTGTTGTTAATCTTAAAAAAAAAA
                      ____________________________________________________________
consensus             AGCTTATCATATTTGATCTTTTCAAGAATGGAAAAATTGTTGTTAATCTTAAAAAAAAAA