Contig 012836:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005P17Sequence438012836 (6)ref|XP_009797474.1|2e-51PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Nicotiana sylvest740001035 (4)gb|AGQ56866.1|3e-96omega-3 fatty acid desaturase [Camellia sinensis]
JMFF008G24Sequence459012836 (6)gb|AIA22325.1|4e-16fatty acid desaturase 7 [Nicotiana tabacum]735001035 (4)emb|CDP14009.1|5e-97unnamed protein product [Coffea canephora]
JMFF028O15Sequence465012836 (6)ref|XP_009797474.1|6e-45PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Nicotiana sylvest
JMFS144D04Sequence619012836 (6)ref|XP_009797474.1|8e-81PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Nicotiana sylvest
JMSF002C09Sequence274012836 (6)758001035 (4)ref|XP_004506769.1|2e-108PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Cicer arietinum]
JMSF034I21Sequence667012836 (6)ref|XP_009797474.1|3e-90PREDICTED: omega-3 fatty acid desaturase, chloroplastic-like [Nicotiana sylvest641001035 (4)gb|AGQ56866.1|3e-89omega-3 fatty acid desaturase [Camellia sinensis]

Alignment

This contig is upended


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JMFS144D04+                                                         GCCAGCAACACTAT
JMSF034I21+                 ATCCATGGTAAGGGACAAGAATTGAAGAATGGAGGAGATGGCCAGCAACACTAT
                      ____________________________________________________________
consensus                   ATCCATGGTAAGGGACAAGAATTGAAGAATGGAGGAGATGGCCAGCAACACTAT
 
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JMFS144D04+           TCAGCTTTGGGTCATTAGAAAAGCTTCCATGGCCACAGTCATGGCCAAGAACAAAGAGAG
JMSF034I21+           TCAGCTTTGGGTCATTAGAAAAGCTTCCATGGCCACAGTCATGGCCAAGAACAAAGAGAG
                      ____________________________________________________________
consensus             TCAGCTTTGGGTCATTAGAAAAGCTTCCATGGCCACAGTCATGGCCAAGAACAAAGAGAG
 
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JMFS144D04+           CCCAGAACATGGTTCCTTGAGCCAACCAATACAGAGGCCAAACAATCCAGTTATTAAGAG
JMFF005P17+                                                              TATTAAGAG
JMSF034I21+           CCCAGAACATGGTTCCTTGAGCCAACCAATACAGAGGCCAAACAATCCAGTTATTAAGAG
                      ____________________________________________________________
consensus             CCCAGAACATGGTTCCTTGAGCCAACCAATACAGAGGCCAAACAATCCAGTTATTAAGAG
 
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JMFS144D04+           AAGCAGCCATAGCTGCCAATCCAAACACAATTGCAACATCCCTAACCACAAAGCTCATGG
JMFF028O15+                                      CAATTGCAACATCCCTAACCACAAAGCTCATGG
JMFF005P17+           AAGCAGCCATAGCTGCCAATCCAAACACAATTGCAACATCCCTAACCACAAAGCTCATGG
JMSF034I21+           AAGCAGCCATAGCTGCCAATCCAAACACAATTGCAACATCCCTAACCACAAAGCTCATGG
                      ____________________________________________________________
consensus             AAGCAGCCATAGCTGCCAATCCAAACACAATTGCAACATCCCTAACCACAAAGCTCATGG
 
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JMFS144D04+           ACTTCCAAGGGTTCTTCACCCAGCAATGCTTAGGAATGGCTGCTTTGATATCAGACAGCT
JMFF028O15+           ACTTCCAAGGGTTCTTCACCCAGCAATGCTTAGGAATGGCTGCTTTGATATCAGACAGCT
JMFF005P17+           ACTTCCAAGGGTTCTTCACCCAGCAATGCTTAGGAATGGCTGCTTTGATATCAGACAGCT
JMSF034I21+           ACTTCCAAGGGTTCTTCACCCAGCAATGCTTAGGAATGGCTGCTTTGATATCAGACAGCT
                      ____________________________________________________________
consensus             ACTTCCAAGGGTTCTTCACCCAGCAATGCTTAGGAATGGCTGCTTTGATATCAGACAGCT
 
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JMFS144D04+           TAAATGGCGGCGGTGCTCCAGGGTCAAAAAACTCAACCCCACCCCCATTGACGCTATTGA
JMFF028O15+           TAAATGGCGGCGGTGCTCCAGGGTCAAAAAACTCAACCCCACCCCCATTGACGCTATTGA
JMFF005P17+           TAAATGGCGGCGGTGCTCCAGGGTCAAAAAACTCAACCCCACCCCCATTGACGCTATTGA
JMSF034I21+           TAAATGGCGGCGGTGCTCCAGGGTCAAAAAACTCAACCCCACCCCCATTGACGCTATTGA
                      ____________________________________________________________
consensus             TAAATGGCGGCGGTGCTCCAGGGTCAAAAAACTCAACCCCACCCCCATTGACGCTATTGA
 
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JMFS144D04+           TTCTCTCCCTCTCTTCTTCCTCTTCCTCCCCAACTGAGGGGACCCTCACCGGGGCACTCA
JMFF028O15+           TTCTCTCCCTCTCTTCTTCCTCTTCCTCCCCAACTGAGGGGACCCTCACCGGGGCACTCA
JMFF005P17+           TTCTCTCCCTCTCTTCTTCCTCTTCCTCCCCAACTGAGGGGACCCTCACCGGGGCACTCA
JMSF034I21+           TTCTCTCCCTCTCTTCTTCCTCTTCCTCCCCAACTGAGGGGACCCTCACCGGGGCACTCA
JMFF008G24+                                CTTCCTCCCCAACTGAGGGGACCCTCACCGGGGCACTCA
                      ____________________________________________________________
consensus             TTCTCTCCCTCTCTTCTTCCTCTTCCTCCCCAACTGAGGGGACCCTCACCGGGGCACTCA
 
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JMFS144D04+           CCCTCAATGCCCAGCTCCTCTCTCTAATCCCAATCAACGAACAAGAACCCAGATCTGTTC
JMFF028O15+           CCCTCAATGCCCAGCTCCTCTCTCTAATCCCAATCAACGAACAAGAACCCAGATCTGTTC
JMFF005P17+           CCCTCAATGCCCAGCTCCTCTCTCTAATCCCAATCAACGAACAAGAACCCAGATCTGTTC
JMSF034I21+           CCCTCAATGCCCAGCTCCTCTCTCTAATCCCAATCAACGAACAAGAACCCAGATCTGTTC
JMFF008G24+           CCCTCAATGCCCAGCTCCTCTCTNTAATCCCAATCAACGAACAAGAACCCAGATCTGTTC
                      ____________________________________________________________
consensus             CCCTCAATGCCCAGCTCCTCTCTCTAATCCCAATCAACGAACAAGAACCCAGATCTGTTC
 
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JMFS144D04+           CTGAAACTGTCACCCTTGAGGGGCTGCCACAACTGAGAGAACCCATCCCAGTTCTTGGCT
JMFF028O15+           CTGAAACTGTCACCCTTGAGGGGCTGCCACAACTGAGAGAACCCATCCCAGTTCTTGGCT
JMFF005P17+           CTGAAACTGTCACCCTTGAGGGGCTGCCACAACTGAGAGAACCCATCCCAGTTCTTGGCT
JMSF034I21+           CTGAAACTGTCACCCTTGAGGGGCTGCCACAACTGAGAGAACCCATCCCAGTTCTTGGCT
JMFF008G24+           CTGAAACTGTCACCCTTGAGGGGCTGCCACAACTGAGAGAACCCATCCCAGTTCTTGGCT
                      ____________________________________________________________
consensus             CTGAAACTGTCACCCTTGAGGGGCTGCCACAACTGAGAGAACCCATCCCAGTTCTTGGCT
 
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JMFS144D04+           TAGGGTAGATTTTGGGGAATGGTCGGAGACCACATTCTGATAACACCCAACTCGCCATTA
JMFF028O15+           TAGGGTAGATTTTGGGGAATGGTCGGAGACCACATTCTGATAACACCCAACTCGCCATTA
JMFF005P17+           TAGGGTAGATTTTGGGGAATGGTCGGAGACCACATTCTGATAACACCCAACTCGCCATTA
JMSF034I21+           TAGGGTAGATTTTGGGGAATGGTCGGAGACCACATTCTGATAACACCCAACTCGCCATTA
JMSF002C09+                                  CGGAGACCACATTCTGATAACACCCAACTCGCCATTA
JMFF008G24+           TAGGGTAGATTTTGGGGAATGGTCGGAGACCACATTCTGATAACACCCAACTCGCCATTA
                      ____________________________________________________________
consensus             TAGGGTAGATTTTGGGGAATGGTCGGAGACCACATTCTGATAACACCCAACTCGCCATTA
 
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JMFS144D04+           GAGGACGTTAGGGACAGAAAGGTAGAACCTTTGAACTCTGGGCCTCTTCCAATTCAAGAG
JMFF028O15+           GAGGACGTTAGGGACAGAAAGGTAGAACCTTTGAACTCTGGGCCTCTTCCAATTCAAGAG
JMFF005P17+           GAGGACGTT                                                   
JMSF034I21+           GAGGACGTTAGGGACAGAAAGGTAGAACCTTTGAACTCTGGGCCTCTTCCAATTCAAGAG
JMSF002C09+           GAGGACGTTAGGGACAGAAAGGTAGAACCTTTGAACTCTGGGCCTCTTCCAATTCAAGAG
JMFF008G24+           GAGGACGTTAGGGACAGAAAGGTAGAACCTTTGAACTCTGGGCCTCTTCCAATTCAAGAG
                      ____________________________________________________________
consensus             GAGGACGTTAGGGACAGAAAGGTAGAACCTTTGAACTCTGGGCCTCTTCCAATTCAAGAG
 
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JMFS144D04+           AGAAA                                                       
JMFF028O15+           AGAAACAGAATT                                                
JMSF034I21+           AGAAACAGAATT                                                
JMSF002C09+           AGAAACAGAATTGTGGCCTCAAAGACCACACAACAGGATATGTAAGTATTGAAGCCGAAA
JMFF008G24+           AGAAACAGAATTGTGGCCTCAAAGACCACACAACAGGATATGTAAGTATTGAAGCCGAAA
                      ____________________________________________________________
consensus             AGAAACAGAATTGTGGCCTCAAAGACCACACAACAGGATATGTAAGTATTGAAGCCGAAA
 
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JMSF002C09+           TCTTGACCAATCAAGAATGGGCTTGTGGTGGGGTTAAGAGGAAGGAGGATGAGGAGATAA
JMFF008G24+           TCTTGACCAATCAAGAATGGGCTTGTGGTGGGGTTAAGAGGAAGGAGGATGAGGAGATAA
                      ____________________________________________________________
consensus             TCTTGACCAATCAAGAATGGGCTTGTGGTGGGGTTAAGAGGAAGGAGGATGAGGAGATAA
 
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JMSF002C09+           CACTAGGGAAAGGGATTCTCTCCTTCAATTGCAGCGTCAGAAACCCCAACTTGTG     
JMFF008G24+           CACTAGGGAAAGGGATTCTCTCCTTCAATTGCAGCGTCAGAAACCCCAACTTGTGTGGTT
                      ____________________________________________________________
consensus             CACTAGGGAAAGGGATTCTCTCCTTCAATTGCAGCGTCAGAAACCCCAACTTGTGTGGTT