| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008C02 | Sequence | 572 | 012833 (4) | ref|XP_009784283.1| | 1e-13 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti | 243 | 006907 (5) | |||
| JMFF014P14 | Sequence | 566 | 012833 (4) | ref|XP_009784283.1| | 7e-08 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti | 748 | 006907 (5) | ref|XP_009784283.1| | 3e-44 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti |
| JMFF037N06 | Sequence | 503 | 012833 (4) | ref|XP_009784283.1| | 7e-07 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti | 762 | 006907 (5) | ref|XP_009784284.1| | 2e-47 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X2 [Nicoti |
| JMFF043N21 | Sequence | 642 | 012833 (4) | ref|XP_009784283.1| | 7e-27 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti | 619 | 006907 (5) | ref|XP_009784283.1| | 1e-32 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like isoform X1 [Nicoti |
This contig is upended
. : . : . : . : . : . :
JMFF043N21+ TTCATCAAGGATTTCTGGGTCTCCAGAATTAGGCTTCCTTAGAGGAA
____________________________________________________________
consensus TTCATCAAGGATTTCTGGGTCTCCAGAATTAGGCTTCCTTAGAGGAA
. : . : . : . : . : . :
JMFF043N21+ GAGTGATAGGATAGTAGCTATTCTTGTAATCCCAAGGTTCTCGATACTCTCTTTTTTTCT
JMFF014P14+ AAGGTTCTCGATACTCTCTTTTTTTCT
JMFF008C02+ AAGGTTCTCGATACTCTCTTTTTTTCT
____________________________________________________________
consensus GAGTGATAGGATAGTAGCTATTCTTGTAATCCCAAGGTTCTCGATACTCTCTTTTTTTCT
. : . : . : . : . : . :
JMFF043N21+ TCTTTATGCTTTCAGCTTTCGCCAAACTATCTTCATCTACATCAACATTAGTATTTGAAG
JMFF014P14+ TCTTTATGCTTTCAGCTTTCGCCAAACTATCTTCATCTACATCAACATTAGTATTTGAAG
JMFF037N06+ TCTACATCAACATTAGTATTTGAAG
JMFF008C02+ TCTTTATGCTTTCAGCTTTCGCCAAACTATCTTCATCTACATCAACATTAGTATTTGAAG
____________________________________________________________
consensus TCTTTATGCTTTCAGCTTTCGCCAAACTATCTTCATCTACATCAACATTAGTATTTGAAG
. : . : . : . : . : . :
JMFF043N21+ GTGAGGGCACAAGGTCTCGCGGGTCACCATAACCAGAACCTTTCAAT-CCTGTACTATCA
JMFF014P14+ GTGAGGGCACAAGGTCTCGCGGGTCACCATAACCAGAACCTTTCAATCCCTGTACTATCA
JMFF037N06+ GTGAGGGCACAAGGTCTCGCGGGTCACCATAACCAGAACCTTTCAAT-CCTGTACTATCA
JMFF008C02+ GTGAGGGCACAAGGTCTCGCGGGTCACCATAACCAGAACCTTTCAAT-CCTGTACTATCA
____________________________________________________________
consensus GTGAGGGCACAAGGTCTCGCGGGTCACCATAACCAGAACCTTTCAAT-CCTGTACTATCA
. : . : . : . : . : . :
JMFF043N21+ GCCGTCCCTTCCCTAGGATTTCCATATGTCCTTATAGGAGCTGATGATGCCACTCCATGA
JMFF014P14+ GCCGTCCCTTCCCTAGGATTTCCATATGTCCTTATAGGAGCTGATGATGCCACTCCATGA
JMFF037N06+ GCCGTCCCTTCCCTAGGATTTCCATATGTCCTTATAGGAGCTGATGATGCCACTCCATGA
JMFF008C02+ GCCGTCCCTTCCCTAGGATTTCCATATGTCCTTATAGGAGCTGATGATGCCACTCCATGA
____________________________________________________________
consensus GCCGTCCCTTCCCTAGGATTTCCATATGTCCTTATAGGAGCTGATGATGCCACTCCATGA
. : . : . : . : . : . :
JMFF043N21+ GAAAATACAACTTGAACCGCCTTCTTCTCAGCTTTAGCTTTCCCTCTAGTCAGATGCTCA
JMFF014P14+ GAAAATACAACTTGAACCGCCTTCTTCTCAGCTTTAGCTTTCCCTCTAGTCAGATGCTCA
JMFF037N06+ GAAAATACAACTTGAACCGCCTTCTTCTCAGCTTTAGCTTTCCCTCTAGTCAGATGCTCA
JMFF008C02+ GAAAATACAACTTGAACCGCCTTCTTCTCAGCTTTAGCTTTCCCTCTAGTCAGATGCTCA
____________________________________________________________
consensus GAAAATACAACTTGAACCGCCTTCTTCTCAGCTTTAGCTTTCCCTCTAGTCAGATGCTCA
. : . : . : . : . : . :
JMFF043N21+ TTGGCTCGCCGGAGAAGACGAGTGTCGGGAGCTTCATCATCAGAAGCATCGTGTCTGTTT
JMFF014P14+ TTGGCTCGCCGGAGAAGACGAGTGTCGGGAGCTTCATCATCAGAAGCATCGTGTCTGTTT
JMFF037N06+ TTGGCTCGCCGGAGAAGACGAGTGTCGGGAGCTTCATCATCAGAAGCATCGTGTCTGTTT
JMFF008C02+ TTGGCTCGCCGGAGAAGACGAGTGTCGGGAGCTTCATCATCAGAAGCATCGTGTCTGTTT
____________________________________________________________
consensus TTGGCTCGCCGGAGAAGACGAGTGTCGGGAGCTTCATCATCAGAAGCATCGTGTCTGTTT
. : . : . : . : . : . :
JMFF043N21+ GATTCTGTTTTGAGTTCGACTTTCTTCTTAGCTCTGCGAGGAGGTGGCTTTGGAGCAAAC
JMFF014P14+ GATTCTGTTTTGAGTTCGACTTTCTTCTTAGCTCTGCGAGGAGGTGGCTTTGGAGCAAAC
JMFF037N06+ GATTCTGTTTTGAGTTCGACTTTCTTCTTAGCTCTGCGAGGAGGTGGCTTTGGAGCAAAC
JMFF008C02+ GATTCTGTTTTGAGTTCGACTTTCTTCTTAGCTCTGCGAGGAGGTGGCTTTGGAGCAAAC
____________________________________________________________
consensus GATTCTGTTTTGAGTTCGACTTTCTTCTTAGCTCTGCGAGGAGGTGGCTTTGGAGCAAAC
. : . : . : . : . : . :
JMFF043N21+ CTAAACTTTCTTGACGACGTAGGAGAAGAAGGTAAATTTGGATCCATGGTGTTTGAGAAA
JMFF014P14+ CTAAACTTTCTTGACGACGTAGGAGAAGAAGGTAAATTTGGATCCATGGTGTTTGAGAAA
JMFF037N06+ CTAAACTTTCTTGACGACGTAGGAGAAGAAGGTAAATTTGGATCCATGGTGTTTGAGAAA
JMFF008C02+ CTAAACTTTCTTGACGACGTAGGAGAAGAAGGTAAATTTGGATCCATGGTGTTTGAGAAA
____________________________________________________________
consensus CTAAACTTTCTTGACGACGTAGGAGAAGAAGGTAAATTTGGATCCATGGTGTTTGAGAAA
. : . : . : . : . : . :
JMFF043N21+ AGCTTTCAAATCCGAAATTAGGTTGAAGACGATGGAGATGGAGATAGAGCTCACAAAAAA
JMFF014P14+ AGCTTTCAAATCCGAAATTAGGTTGAAGACGATGGAGATGGAGATAGAGCTCACAAAAAA
JMFF037N06+ AGCTTTCAAATCCGAAATTAGGTTGAAGACGATGGAGATGGAGATAGAGCTCACAAAAAA
JMFF008C02+ AGCTTTCAAATCCGAAATTAGGTTGAAGACGATGGAGATGGAGATAGAGCTCACAAAAAA
____________________________________________________________
consensus AGCTTTCAAATCCGAAATTAGGTTGAAGACGATGGAGATGGAGATAGAGCTCACAAAAAA
. : . : . : . : . : . :
JMFF043N21+ CGCAGGGAGGAGAAGTTAGGGGCGGGTTCGACCTGCAGACGTCAAGTTAGAAGAGA
JMFF014P14+ CGCAGGGAGGAGAAGTTAGGGGCGGGTTCGACCTGCAGACGTCAAGTTAGAAGAGA
JMFF037N06+ CGCAGGGAGGAGAAGTTAGGGGCGGGTTCGACCTGCAGACGTCAAGTTAGAAGAGA
JMFF008C02+ CGCAGGGAGGAGAAGTTAGGGGCGGGTTCGACCTGCAGACGTCAAGTTAGAAGAGAAGAC
____________________________________________________________
consensus CGCAGGGAGGAGAAGTTAGGGGCGGGTTCGACCTGCAGACGTCAAGTTAGAAGAGAAGAC