Contig 012816:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP018C11Sequence596012816 (5)ref|XP_009758756.1|6e-49PREDICTED: protein NRT1/ PTR FAMILY 5.8 [Nicotiana sylvestris] ref|XP_009758757.
JMFF004K03Sequence537012816 (5)ref|XP_006338515.1|5e-42PREDICTED: probable peptide/nitrate transporter At5g14940-like [Solanum tuberos706012377 (3)ref|XP_009758756.1|3e-96PREDICTED: protein NRT1/ PTR FAMILY 5.8 [Nicotiana sylvestris] ref|XP_009758757.
JMFF017C24Sequence546012816 (5)ref|XP_009758756.1|3e-82PREDICTED: protein NRT1/ PTR FAMILY 5.8 [Nicotiana sylvestris] ref|XP_009758757.748012377 (3)ref|XP_009758756.1|1e-94PREDICTED: protein NRT1/ PTR FAMILY 5.8 [Nicotiana sylvestris] ref|XP_009758757.
JMFF036H07Sequence551012816 (5)ref|XP_009758756.1|5e-84PREDICTED: protein NRT1/ PTR FAMILY 5.8 [Nicotiana sylvestris] ref|XP_009758757.699012377 (3)ref|XP_009758756.1|4e-84PREDICTED: protein NRT1/ PTR FAMILY 5.8 [Nicotiana sylvestris] ref|XP_009758757.
JMFF050M04Sequence587012816 (5)ref|XP_006338515.1|2e-44PREDICTED: probable peptide/nitrate transporter At5g14940-like [Solanum tuberos412019192ref|XP_004232263.1|1e-15PREDICTED: protein NRT1/ PTR FAMILY 5.8-like [Solanum lycopersicum] ref|XP_01031

Alignment

This contig is upended


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JMFF036H07+                                         GTCCTGGATATACGACAAGACTGAGACTCC
JMFF017C24+                                              GGATATACGACAAGACTGAGACTCC
                      ____________________________________________________________
consensus                                           GTCCTGGATATACGACAAGACTGAGACTCC
 
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JMFF036H07+           CAGAAGACTGCCGCAGCAAATGCCGAAATACCACCACTGGAAGAACAAACTCTTCTTGAC
JMFF017C24+           CAGAAGACTGCCGCAGCAAATGCCGAAATACCACCACTGGAAGAACAAACTCTTCTTGAC
                      ____________________________________________________________
consensus             CAGAAGACTGCCGCAGCAAATGCCGAAATACCACCACTGGAAGAACAAACTCTTCTTGAC
 
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JMFF036H07+           GGAGCTCTTGTCGCCGTTCTTGGTTGACGGCAGCTCGCCGTCGTCTTCATCTCCAAGCTG
JMFF017C24+           GGAGCTCTTGTCGCCGTTCTTGGTTGACGGCAGCTCGCCGTCGTCTTCATCTCCAAGCTG
                      ____________________________________________________________
consensus             GGAGCTCTTGTCGCCGTTCTTGGTTGACGGCAGCTCGCCGTCGTCTTCATCTCCAAGCTG
 
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JMFF036H07+           ATCCGCCGCGAAGGCCTGCAAGGATGGGTTGTAGCCACCCAGGCCCAGTGAAATTAAGTG
JMFF017C24+           ATCCGCCGCGAAGGCCTGCAAGGATGGGTTGTAGCCACCCAGGCCCAGTGAAATTAAGTG
JMCP018C11+                                                CCCAGGCCCAGTGAAATTAAGTG
JMFF050M04+                                                                      G
                      ____________________________________________________________
consensus             ATCCGCCGCGAAGGCCTGCAAGGATGGGTTGTAGCCACCCAGGCCCAGTGAAATTAAGTG
 
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JMFF036H07+           GAGCGGCCATGAGAGGGAAGAAGAGCTAATTTTCTGGGCATTATTACTCCCCGGCGGCCA
JMFF017C24+           GAGCGGCCATGAGAGGGAAGAAGAGCTAATTTTCTGGGCATTATTACTCCCCGGCGGCCA
JMCP018C11+           GAGCGGCCATGAGAGGGAAGAAGAGCTAATTTTgaGGGCATTATTACTCCCCGGCGGCCA
JMFF050M04+           GAGCGGCCATGAGAGGGAAGAAGAGCTAATNTTCTGGGCA-TATTACTCCCCGGCGGCCA
                      ____________________________________________________________
consensus             GAGCGGCCATGAGAGGGAAGAAGAGCTAATTTTCTGGGCATTATTACTCCCCGGCGGCCA
 
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JMFF036H07+           CCCCATCGCCGTTGATGTCAACGCTATCAGCCCCAGAATATAGAAAAATGCAGAGCCTAA
JMFF017C24+           CCCCATCGCCGTTGATGTCAACGCTATCAGCCCCAGAATATAGAAAAATGCAGAGCCTAA
JMCP018C11+           CCCCATCGCCGTTGATGTCAACGCTATCAGCCCCAGAATATAGAAAAATGCAGAGCCTAA
JMFF050M04+           CCCCATCGCCGTTGATGTCAACGCTATCAGCCCCAGAATATAGAAAAATGCAGAGCCTAA
JMFF004K03+              CATCGCCGTTGATGTCAACGCTATCAGCCCCAGAATATAGAAAAATGCAGAGCCTAA
                      ____________________________________________________________
consensus             CCCCATCGCCGTTGATGTCAACGCTATCAGCCCCAGAATATAGAAAAATGCAGAGCCTAA
 
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JMFF036H07+           AATAGTTGAATAGCTATCCAAGTAAGAGTCGGCCAACGGCGCCACCAGCAGCGGCACCAT
JMFF017C24+           AATAGTTGAATAGCTATCCAAGTAAGAGTCGGCCAACGGCGCCACCAGCAGCGGCACCAT
JMCP018C11+           AATAGTTGAATAGCTATCCAAGTAAGAGTCGGCCAACGGCGCCACCAGCAGCGGCACCAT
JMFF050M04+           AATAGTTGAATAGCTATCCAAGTAAGAGTCGGCCAACGGCGCCACCAGCAGCGGCACCAT
JMFF004K03+           AATAGTTGAATAGCTATCCAAGTAAGAGTCGGCCAACGGCGCCACCAGCAGCGGCACCAT
                      ____________________________________________________________
consensus             AATAGTTGAATAGCTATCCAAGTAAGAGTCGGCCAACGGCGCCACCAGCAGCGGCACCAT
 
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JMFF036H07+           AGAGGTGAAGCCACACCAATTGTTGACCAGCTTCGCCGCCGACGAGTTGCTCATCTTCGC
JMFF017C24+           AGAGGTGAAGCCACACCAATTGTTGACCAGCTTCGCCGCCGACGAGTTGCTCATCTTCGC
JMCP018C11+           AGAGGTGAAGCCACACCAATTGTTGACCAGCTTCGCCGCCGACGAGTTGCTCATCTTCGC
JMFF050M04+           AGAGGTGAAGCCACACCAATTGTTGACCAGCTTCGCCGCCGACGAGTTGCTCATCTTCGC
JMFF004K03+           AGAGGTGAAGCCACACCAATTGTTGACCAGCTTCGCCGCCGACGAGTTGCTCATCTTCGC
                      ____________________________________________________________
consensus             AGAGGTGAAGCCACACCAATTGTTGACCAGCTTCGCCGCCGACGAGTTGCTCATCTTCGC
 
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JMFF036H07+           CACATCCGTGAGATACGTCACCAAATTCGCCGCCACGCCTTTGAACGTGAACCTCTCCAT
JMFF017C24+           CACATCCGTGAGATACGTCACCAAATTCGCCGCCACGCCTTTGAACGTGAACCTCTCCAT
JMCP018C11+           CACATCCGTGAGATACGTCACCAAATTCGCCGCCACGCCTTTGAACGTGAACCTCTCCAT
JMFF050M04+           CACATCCGTGAGATACGTCACCAAATTCGCCGCCACGCCTTTGAACGTGAACCTCTCCAT
JMFF004K03+           CACATCCGTGAGATACGTCACCAAATTCGCCGCCACGCCTTTGAACGTGAACCTATCCAT
                      ____________________________________________________________
consensus             CACATCCGTGAGATACGTCACCAAATTCGCCGCCACGCCTTTGAACGTGAACCTCTCCAT
 
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JMFF036H07+           CCCCGCTATCACTATGAGGAGAATGCATGGCTTGTTAAGAC                   
JMFF017C24+           CCCCGCTATCACTATGAGGAGAATGCATGGCTTGTTAAGAC                   
JMCP018C11+           CCCCGCTATCACTATGAGGAGAATGCATGGCTTGTTCAGACCTTGCCCGCCCGCCATGGC
JMFF050M04+           CCCCGCTATCACTATGAGGAGAATGCATGGCTTGTTCAGACCTTGCCCGCCCGCCATGGC
JMFF004K03+           CCCCGCTATCACTATGAGGAGAATGCATGGCTTGTTCAGACCTTGCCCGCCCGCCATGGC
                      ____________________________________________________________
consensus             CCCCGCTATCACTATGAGGAGAATGCATGGCTTGTTCAGACCTTGCCCGCCCGCCATGGC
 
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JMCP018C11+           TAGCTACAACGTACTAGATCAGAACGAAGATGGAGTAATAATGAACAGAAACCTGAG   
JMFF050M04+           TAGCTACAACGTACTAGATCAGAACGAAGATGGAGTAATAATGAACAGAAACCTGAGATT
JMFF004K03+           TAGCTACAACGTACTAGATCAGAACGAAGATGGAGTAATAATGAACAGAAACCTGAGATT
                      ____________________________________________________________
consensus             TAGCTACAACGTACTAGATCAGAACGAAGATGGAGTAATAATGAACAGAAACCTGAGATT
 
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JMFF050M04+           CATATAATAATATATTTAATTAATTAGCCATTGAAGCACCAATAAGGTGGGGATGGGGGC
JMFF004K03+           CATATAATAATATATTTAATTAATTAGCCATTGAAGCACCAATAAGGTGGGGATGGGGGC
                      ____________________________________________________________
consensus             CATATAATAATATATTTAATTAATTAGCCATTGAAGCACCAATAAGGTGGGGATGGGGGC
 
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JMFF050M04+           ACTGCTCTACTTGACCAAGATTCTATATCATGGCCGCCTCTTTGCTAGCTTTTACAAATT
JMFF004K03+           ACTGCTCTACTTGACCAAGATTCTATATCATGGCCGCCTCTTTGCTAGCTTTTACAAATT
                      ____________________________________________________________
consensus             ACTGCTCTACTTGACCAAGATTCTATATCATGGCCGCCTCTTTGCTAGCTTTTACAAATT
 
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JMFF050M04+           GTAGTGGAACACTGGACAATCACTCATCTGCTTGCTTTTCCAAAGT              
JMFF004K03+           GTAGTGGAACACTGGACAATCACTCATCTGCTTGCTTTTCCAAAGTAAATTGTGACACAT
                      ____________________________________________________________
consensus             GTAGTGGAACACTGGACAATCACTCATCTGCTTGCTTTTCCAAAGTAAATTGTGACACAT