Contig 012814:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004E21Sequence489012814 (11)ref|XP_009613485.1|5e-28PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo745006982 (11)dbj|BAF01799.1|1e-79H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMFF028C23Sequence600012814 (11)ref|XP_009613485.1|5e-64PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo657006982 (11)dbj|BAF01799.1|1e-61H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMFF034C13Sequence594012814 (11)ref|XP_009613485.1|2e-70PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo697006982 (11)dbj|BAF01799.1|3e-71H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMFF047M06Sequence430012814 (11)ref|NP_001289494.1|4e-14ATP synthase subunit beta, mitochondrial-like [Nicotiana sylvestris] gb|AAD03392245006982 (11)
JMFS082F08Sequence618012814 (11)ref|XP_009613485.1|1e-83PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo
JMSF008I20Sequence296012814 (11)ref|XP_006344203.1|6e-04PREDICTED: ATP synthase subunit beta, mitochondrial-like [Solanum tuberosum]725006982 (11)dbj|BAF01799.1|9e-81H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMSF014O09Sequence318012814 (11)gb|AAD03393.1|9e-10ATPase beta subunit [Nicotiana sylvestris]669012814 (11)ref|XP_009613485.1|4e-61PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo
JMSF020M20Sequence688012814 (11)ref|XP_009613485.1|8e-86PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo775006982 (11)dbj|BAF01799.1|1e-93H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMSF031N15Sequence639012814 (11)ref|XP_009613485.1|7e-75PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo678006982 (11)emb|CAJ38391.1|2e-68mitochondrial ATP synthase, beta chain [Plantago major]
JMSF043D01Sequence581012814 (11)ref|XP_009613485.1|1e-71PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo740006982 (11)emb|CAJ38391.1|6e-74mitochondrial ATP synthase, beta chain [Plantago major]

Alignment

This contig is upended


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rJMSF014O09- GTTCAGAGTTCACATTGTAAAGCCATGAATCGCAATTGTAATATGAA
                      ____________________________________________________________
consensus GTTCAGAGTTCACATTGTAAAGCCATGAATCGCAATTGTAATATGAA
 
. : . : . : . : . : . :
rJMSF014O09- TACAGAGTAAAAATGAAATAGCAAACCATCAGAATAAAGCACCAATCTTTATGAATGATG
JMFF034C13+ CAATGACATTGATG
JMFF028C23+ CTCCCCAATGACATTGATG
JMSF043D01+ CCAATGACATTGATG
JMSF031N15+ CTCATCAATGGCCTCCCCAATGACATTGATG
                      ____________________________________________________________
consensus TACAGAGTAAAAATGAAATAGCAAACCATCTGATTAATGGCCTCCCCAATGACATTGATG
 
. : . : . : . : . : . :
JMFS082F08+ ACAGTGATTGGAGAGCCGGTATTAAGCAC
rJMSF014O09- --AAGAAAATGAATAGGCC---AGATCACTCACAGTGATTGGAGAGCCGGTATTAAGCAC
JMFF034C13+ ATACGCCCAAGAGTGGCCN-TACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
JMFF028C23+ ATACGCCCAAGAGTGGCCCNTACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
JMSF043D01+ ATACGCCCAAGAGTGGCCC-TACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
JMSF020M20+ ACAGTGATTGGAGAGCCGGTATTAAGCAC
JMSF031N15+ ATACGCCCAAGAGTGGCCC-TACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
                      ____________________________________________________________
consensus ATACGCCCAAGAGTGGCCC-TACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
 
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JMFS082F08+ ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
rJMSF014O09- ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMFF034C13+ ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMFF028C23+ ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMSF043D01+ ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMSF020M20+ ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMSF031N15+ ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
                      ____________________________________________________________
consensus ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
 
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JMFS082F08+ ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
rJMSF014O09- ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMFF034C13+ ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMFF028C23+ ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMSF043D01+ ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMSF020M20+ ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMSF031N15+ ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMFF004E21+ CTCAAGCGC
                      ____________________________________________________________
consensus ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
 
. : . : . : . : . : . :
JMFS082F08+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
rJMSF014O09- CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMFF034C13+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMFF028C23+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMSF043D01+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMSF020M20+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMSF031N15+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMFF047M06+ CAATAACCTG
JMFF004E21+ CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
                      ____________________________________________________________
consensus CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
 
. : . : . : . : . : . :
JMFS082F08+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF014O09+ CCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF008I20+ CCTTCCCNATAGAACCGNCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
rJMSF014O09- GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFF034C13+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFF028C23+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF043D01+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF020M20+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF031N15+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFF047M06+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFF004E21+ GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
                      ____________________________________________________________
consensus GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
 
. : . : . : . : . : . :
JMFS082F08+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF014O09+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF008I20+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAANTAGAGTAACGAGC
rJMSF014O09- ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMFF034C13+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMFF028C23+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF043D01+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF020M20+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF031N15+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMFF047M06+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMFF004E21+ ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
                      ____________________________________________________________
consensus ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
 
. : . : . : . : . : . :
JMFS082F08+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF014O09+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF008I20+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGNCCTAGTTAG
rJMSF014O09- GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMFF034C13+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMFF028C23+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF043D01+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF020M20+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF031N15+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMFF047M06+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMFF004E21+ GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
                      ____________________________________________________________
consensus GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
 
. : . : . : . : . : . :
JMFS082F08+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF014O09+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF008I20+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
rJMSF014O09- GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFF034C13+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFF028C23+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF043D01+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF020M20+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF031N15+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFF047M06+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFF004E21+ GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
                      ____________________________________________________________
consensus GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
 
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JMFS082F08+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF014O09+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF008I20+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAG
rJMSF014O09- TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMFF034C13+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMFF028C23+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF043D01+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF020M20+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF031N15+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMFF047M06+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMFF004E21+ TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
                      ____________________________________________________________
consensus TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
 
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JMFS082F08+ AAGAAAGA
JMSF014O09+ AAGAAAGAGGAGAAGGAGAGACT
rJMSF014O09- AAGAAAGAGGAGAAGGAGAGACT
JMFF034C13+ AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAAT
JMFF028C23+ AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAAT
JMSF043D01+ AAGAAAGAGGAGAAGGAGAGACTGC
JMSF020M20+ AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
JMSF031N15+ AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
JMFF047M06+ AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
JMFF004E21+ AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
                      ____________________________________________________________
consensus AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
 
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JMSF020M20+ T
JMSF031N15+ T
JMFF047M06+ TAGACGGTCAAAAAGAGCAGAGCGAGAGTTGTGCGTTTCGATCTCATTACTCGGCACCTT
JMFF004E21+ TAGACGGTCAAAAAGAGCAGAGCGAGAGTTGTGCGTTTCGATCTCATTACTCGGCACCTT
                      ____________________________________________________________
consensus TAGACGGTCAAAAAGAGCAGAGCGAGAGTTGTGCGTTTCGATCTCATTACTCGGCACCTT