Contig 012814:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004E21Sequence489012814 (11)ref|XP_009613485.1|5e-28PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo745006982 (11)dbj|BAF01799.1|1e-79H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMFF028C23Sequence600012814 (11)ref|XP_009613485.1|5e-64PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo657006982 (11)dbj|BAF01799.1|1e-61H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMFF034C13Sequence594012814 (11)ref|XP_009613485.1|2e-70PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo697006982 (11)dbj|BAF01799.1|3e-71H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMFF047M06Sequence430012814 (11)ref|NP_001289494.1|4e-14ATP synthase subunit beta, mitochondrial-like [Nicotiana sylvestris] gb|AAD03392245006982 (11)
JMFS082F08Sequence618012814 (11)ref|XP_009613485.1|1e-83PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo
JMSF008I20Sequence296012814 (11)ref|XP_006344203.1|6e-04PREDICTED: ATP synthase subunit beta, mitochondrial-like [Solanum tuberosum]725006982 (11)dbj|BAF01799.1|9e-81H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMSF014O09Sequence318012814 (11)gb|AAD03393.1|9e-10ATPase beta subunit [Nicotiana sylvestris]669012814 (11)ref|XP_009613485.1|4e-61PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo
JMSF020M20Sequence688012814 (11)ref|XP_009613485.1|8e-86PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo775006982 (11)dbj|BAF01799.1|1e-93H+-transporting ATP synthase beta chain (mitochondrial) -like protein [Arabidop
JMSF031N15Sequence639012814 (11)ref|XP_009613485.1|7e-75PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo678006982 (11)emb|CAJ38391.1|2e-68mitochondrial ATP synthase, beta chain [Plantago major]
JMSF043D01Sequence581012814 (11)ref|XP_009613485.1|1e-71PREDICTED: ATP synthase subunit beta, mitochondrial-like [Nicotiana tomentosifo740006982 (11)emb|CAJ38391.1|6e-74mitochondrial ATP synthase, beta chain [Plantago major]

Alignment

This contig is upended


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rJMSF014O09-                       GTTCAGAGTTCACATTGTAAAGCCATGAATCGCAATTGTAATATGAA
                      ____________________________________________________________
consensus                          GTTCAGAGTTCACATTGTAAAGCCATGAATCGCAATTGTAATATGAA
 
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rJMSF014O09-          TACAGAGTAAAAATGAAATAGCAAACCATCAGAATAAAGCACCAATCTTTATGAATGATG
JMFF034C13+                                                         CAATGACATTGATG
JMFF028C23+                                                    CTCCCCAATGACATTGATG
JMSF043D01+                                                        CCAATGACATTGATG
JMSF031N15+                                        CTCATCAATGGCCTCCCCAATGACATTGATG
                      ____________________________________________________________
consensus             TACAGAGTAAAAATGAAATAGCAAACCATCTGATTAATGGCCTCCCCAATGACATTGATG
 
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JMFS082F08+                                          ACAGTGATTGGAGAGCCGGTATTAAGCAC
rJMSF014O09-          --AAGAAAATGAATAGGCC---AGATCACTCACAGTGATTGGAGAGCCGGTATTAAGCAC
JMFF034C13+           ATACGCCCAAGAGTGGCCN-TACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
JMFF028C23+           ATACGCCCAAGAGTGGCCCNTACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
JMSF043D01+           ATACGCCCAAGAGTGGCCC-TACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
JMSF020M20+                                          ACAGTGATTGGAGAGCCGGTATTAAGCAC
JMSF031N15+           ATACGCCCAAGAGTGGCCC-TACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
                      ____________________________________________________________
consensus             ATACGCCCAAGAGTGGCCC-TACCAACAGGAACAGTGATTGGAGAGCCGGTATTAAGCAC
 
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JMFS082F08+           ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
rJMSF014O09-          ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMFF034C13+           ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMFF028C23+           ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMSF043D01+           ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMSF020M20+           ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
JMSF031N15+           ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
                      ____________________________________________________________
consensus             ACGTTGACCTCGCACGAGCCCTTCAGTACCGTCCATGGCGATGGTCCTAACCATATTCTC
 
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JMFS082F08+           ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
rJMSF014O09-          ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMFF034C13+           ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMFF028C23+           ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMSF043D01+           ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMSF020M20+           ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMSF031N15+           ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
JMFF004E21+                                                              CTCAAGCGC
                      ____________________________________________________________
consensus             ACCCAAGTGCTGAGCCACCTCGAGAACAAGCCGGATCTGGTTGTCAAGCACCTCAAGCGC
 
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JMFS082F08+           CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
rJMSF014O09-          CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMFF034C13+           CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMFF028C23+           CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMSF043D01+           CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMSF020M20+           CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMSF031N15+           CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
JMFF047M06+                                                             CAATAACCTG
JMFF004E21+           CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
                      ____________________________________________________________
consensus             CGTGAGGATAGGGGGCAGCCCCTCATCAAACCTCACATCAACAACGGCACCAATAACCTG
 
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JMFS082F08+           GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF014O09+                    CCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF008I20+                CCTTCCCNATAGAACCGNCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
rJMSF014O09-          GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFF034C13+           GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFF028C23+           GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF043D01+           GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF020M20+           GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMSF031N15+           GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFF047M06+           GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
JMFF004E21+           GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
                      ____________________________________________________________
consensus             GCAGACCTTCCCGATAGAACCGGCGCCAGTGAACTCATCGGTGATCTTCCCGGTGGGCTC
 
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JMFS082F08+           ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF014O09+           ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF008I20+           ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAANTAGAGTAACGAGC
rJMSF014O09-          ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMFF034C13+           ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMFF028C23+           ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF043D01+           ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF020M20+           ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMSF031N15+           ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMFF047M06+           ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
JMFF004E21+           ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
                      ____________________________________________________________
consensus             ATTTCCGGCAGGCTTAGAAGCCGGCTTATCAGCAGGGGCGGCGGAAGTAGAGTAACGAGC
 
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JMFS082F08+           GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF014O09+           GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF008I20+           GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGNCCTAGTTAG
rJMSF014O09-          GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMFF034C13+           GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMFF028C23+           GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF043D01+           GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF020M20+           GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMSF031N15+           GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMFF047M06+           GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
JMFF004E21+           GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
                      ____________________________________________________________
consensus             GAGCCGGTTCAGGAGAAATCCGGCAGGGGAGGAACGTGTAGTTGGCCGAGGCCTAGTTAG
 
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JMFS082F08+           GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF014O09+           GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF008I20+           GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
rJMSF014O09-          GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFF034C13+           GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFF028C23+           GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF043D01+           GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF020M20+           GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMSF031N15+           GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFF047M06+           GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
JMFF004E21+           GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
                      ____________________________________________________________
consensus             GGAGTTGGCAACGGCGGATCTGGAAACGGAGCCACCCCGATGGGAGGATGATCGAAGGAT
 
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JMFS082F08+           TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF014O09+           TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF008I20+           TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAG 
rJMSF014O09-          TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMFF034C13+           TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMFF028C23+           TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF043D01+           TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF020M20+           TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMSF031N15+           TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMFF047M06+           TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
JMFF004E21+           TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
                      ____________________________________________________________
consensus             TGAGGCCAGAAGCCTCCGGGAAGCCATTGAAGGGTTATGGCGTTAAACTGTGAAGACAGT
 
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JMFS082F08+           AAGAAAGA                                                    
JMSF014O09+           AAGAAAGAGGAGAAGGAGAGACT                                     
rJMSF014O09-          AAGAAAGAGGAGAAGGAGAGACT                                     
JMFF034C13+           AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAAT                   
JMFF028C23+           AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAAT                   
JMSF043D01+           AAGAAAGAGGAGAAGGAGAGACTGC                                   
JMSF020M20+           AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
JMSF031N15+           AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
JMFF047M06+           AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
JMFF004E21+           AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
                      ____________________________________________________________
consensus             AAGAAAGAGGAGAAGGAGAGACTGCTAGGGTTTGAGGGAATGAGAAGGGTGATGTTTATC
 
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JMSF020M20+           T                                                           
JMSF031N15+           T                                                           
JMFF047M06+           TAGACGGTCAAAAAGAGCAGAGCGAGAGTTGTGCGTTTCGATCTCATTACTCGGCACCTT
JMFF004E21+           TAGACGGTCAAAAAGAGCAGAGCGAGAGTTGTGCGTTTCGATCTCATTACTCGGCACCTT
                      ____________________________________________________________
consensus             TAGACGGTCAAAAAGAGCAGAGCGAGAGTTGTGCGTTTCGATCTCATTACTCGGCACCTT