Contig 012811:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMFF003D24-                                          ATGATTATTGACTGTTCATATGAACGAA
rJMFF040H23-                                           TGATTATTGACTGTTCATATGAACGAA
                      ____________________________________________________________
consensus                                             ATGATTATTGACTGTTCATATGAACGAA
 
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rJMFF003D24-          ATATAATCATCTCGTGTACAATATTGAATTAACTTAAAAGCAAGGCACACTTGTGTGGCC
rJMFF040H23-          ATATAATCATCTCGTGTACAATATTGAATTAACTTAAAAGCAAGGCACACTTGTGTGGCC
                      ____________________________________________________________
consensus             ATATAATCATCTCGTGTACAATATTGAATTAACTTAAAAGCAAGGCACACTTGTGTGGCC
 
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rJMFF003D24-          AGTAATGAATATTAAAATCTGTTGCTAAAAAAGAAACAATAATGAAAAGATGATAAGCAT
rJMFF040H23-          AGTAATGAATATTAAAATCTGTTGCTAAAAAAGAAACAATAATGAAAAGATGATAAGCAT
                      ____________________________________________________________
consensus             AGTAATGAATATTAAAATCTGTTGCTAAAAAAGAAACAATAATGAAAAGATGATAAGCAT
 
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rJMFF003D24-          CTGTAAATATTTTATATCAATGGTATGATTTCACATGGAAAATTTGACACCTTGGCACGT
rJMFF040H23-          CTGTAAATATTTTATATCAATGGTATGATTTCACATGGAAAATTTGACACCTTGGCANGT
                      ____________________________________________________________
consensus             CTGTAAATATTTTATATCAATGGTATGATTTCACATGGAAAATTTGACACCTTGGCACGT
 
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rJMFF003D24-          ACCCACTCTTAGTGGCAACCTGCTCAAACTTTTTAGTTGCTGCTTCATTCTCCTCCAAGC
rJMFF040H23-          ACCCACTCTTAGTGGCAACCTGCTCAAACTTTTTAGTTGCTGCTTCATTCTCCTCCAAGC
                      ____________________________________________________________
consensus             ACCCACTCTTAGTGGCAACCTGCTCAAACTTTTTAGTTGCTGCTTCATTCTCCTCCAAGC
 
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rJMFF003D24-          TGGTCTGAGCAAAGAAGTGTACCCACCAGGATGAACTCCGCATTTTTGCAGGACGCCCAA
rJMFF040H23-          TGGTCTGAGCAAAGAAGTGTACCCACCAGGATGAACTCCGCATTTTTGCAGGACGCCCAA
                      ____________________________________________________________
consensus             TGGTCTGAGCAAAGAAGTGTACCCACCAGGATGAACTCCGCATTTTTGCAGGACGCCCAA
 
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rJMFF003D24-          ACTTGGATAGCTCTGCAATTTTCACTCTAGATTGGCCTGGATAACCTGTGAAAATAATTA
rJMFF040H23-          ACTTGGATAGCTCTGCAATTTTCACTCTAGATTGGCCTGGATAACCTGTGAAAATAATTA
                      ____________________________________________________________
consensus             ACTTGGATAGCTCTGCAATTTTCACTCTAGATTGGCCTGGATAACCTGTGAAAATAATTA
 
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rJMFF003D24-          CACCATCAGAGGACACTCTTGCCAACTCTGGGACTGTCTTGTTCAGATATTTTGGAGATA
rJMFF040H23-          CACCATCAGAGGACACTCTTGCCAACTCTGGGACTGTCTTGTTCAGATATTTTGGAGATA
                      ____________________________________________________________
consensus             CACCATCAGAGGACACTCTTGCCAACTCTGGGACTGTCTTGTTCAGATATTTTGGAGATA
 
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rJMFF003D24-          GGTAATCCACCGCATCAGATACAATAACAAGTGAGAAAGATTTTGACTTGTAGGGTAGAG
rJMFF040H23-          GGTAATCCACCGCATCAGATACAATAACAAGTGAGAAAGATTTTGACTTGTAGGGTAGAG
JMFF040H23+                                                          TTGTAGGGTAGAG
                      ____________________________________________________________
consensus             GGTAATCCACCGCATCAGATACAATAACAAGTGAGAAAGATTTTGACTTGTAGGGTAGAG
 
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rJMFF003D24-          GGAACTTGATATCATTTACACGTACTATGCCCTGTCGCACAAGGTGTTTGCAGTTCACAT
rJMFF040H23-          GGAACTTGATATCATTTACACGTACTATGCCCTGTCGCACAAGGTGTTTGCAGTTCACAT
JMFF040H23+           GGAACTTGATATCATTTACACGTACTATGCCCTGTCGCACAAGGTGTTTGCAGTTCACAT
                      ____________________________________________________________
consensus             GGAACTTGATATCATTTACACGTACTATGCCCTGTCGCACAAGGTGTTTGCAGTTCACAT
 
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rJMFF003D24-          CAGCATCCTCTATGTCATATGGTTCCACGCCCCATGCCTCAGTTTCCTCTTCTTTTAACA
rJMFF040H23-          CAGCATCCTCTATGTCATATGGTTCCACGCCCCATGCCTCAGTTTCCTCTTCTTTTAACA
JMFF040H23+           CAGCATCCTNTATGTCATATGGTTCCACGCCCCATGCCTCAGTTTCCTCTTCTTTTAACA
                      ____________________________________________________________
consensus             CAGCATCCTCTATGTCATATGGTTCCACGCCCCATGCCTCAGTTTCCTCTTCTTTTAACA
 
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rJMFF003D24-          ATCTAGAGACCACTGAACAAGTATCAGGTCCCACGTGCAAAACACTACGCATACTGTCAC
rJMFF040H23-          ATCTAGAGACCACTGAACAAGTATCAGGTCCCACGTGCAAAACACTACGCATACTGTCAC
JMFF040H23+           ATCTAGAGACCACTGAACAAGTATCAGGTCCCACGTGCAAAACACTACGCATACTGTCAC
                      ____________________________________________________________
consensus             ATCTAGAGACCACTGAACAAGTATCAGGTCCCACGTGCAAAACACTACGCATACTGTCAC
 
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rJMFF003D24-          CATATGTGCTCTTTA                                             
rJMFF040H23-          CATATGTGCTCTTTAAATAAGCCGTTGCTCTCTGAACCTCAGATGTGCATGTAAAGTCAC
JMFF040H23+           CATATGTGCTCTTTAAATAAGCCGTTGCTCTCTGAACCTCAGATGTGCATGTAAAGTCAC
                      ____________________________________________________________
consensus             CATATGTGCTCTTTAAATAAGCCGTTGCTCTCTGAACCTCAGATGTGCATGTAAAGTCAC
 
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rJMFF040H23-          CATCTATCTTGCTAAGTGCTTCCCTTGTACTTGCACCAATACCA                
JMFF040H23+           CATCTATCTTGCTAAGTGCTTCCCTTGTACTTGCACCAATACCAGGGCCCCGATAAATAT
                      ____________________________________________________________
consensus             CATCTATCTTGCTAAGTGCTTCCCTTGTACTTGCACCAATACCAGGGCCCCGATAAATAT
 
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JMFF040H23+           AAGCAACCACAAAGACAACACCCAGAATGACAAGAATTGTAGAAAATAGAGGCGAAATGC
                      ____________________________________________________________
consensus             AAGCAACCACAAAGACAACACCCAGAATGACAAGAATTGTAGAAAATAGAGGCGAAATGC
 
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JMFF040H23+           GTGATTTTGGATGAAACAGCCCCCCAGCACCTCCAAATCGCCTCGTTGGGTATCCTGGCC
                      ____________________________________________________________
consensus             GTGATTTTGGATGAAACAGCCCCCCAGCACCTCCAAATCGCCTCGTTGGGTATCCTGGCC
 
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JMFF040H23+           TTCTTGACATGACTACAAACTCAGACTTGTGGATCTCGGATCTGCTGAGTTCTGATATTC
JMFF003D24+                     GACTACAAACTCAGACTTGTGGATCTCGGATCTGCTGAGTTCTGATATTC
                      ____________________________________________________________
consensus             TTCTTGACATGACTACAAACTCAGACTTGTGGATCTCGGATCTGCTGAGTTCTGATATTC
 
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JMFF040H23+           ACGTATACGAACACAACAAATTGTTGAACGCCGGTGAATCTAAATTCCGGCGATAACGA 
JMFF003D24+           ACGTATACGAACACAACAAATTGTTGAACGCCGGTGAATCTAAATTCCGGCGATAACGAC
                      ____________________________________________________________
consensus             ACGTATACGAACACAACAAATTGTTGAACGCCGGTGAATCTAAATTCCGGCGATAACGAC