Contig 012806:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001J13Sequence542012806 (3)dbj|BAA13440.1|1e-62calcium dependent protein kinase [Ipomoea batatas]683009954 (5)dbj|BAA13440.1|1e-84calcium dependent protein kinase [Ipomoea batatas]
JMFF031D22Sequence488012806 (3)dbj|BAA13440.1|5e-63calcium dependent protein kinase [Ipomoea batatas]786009954 (5)dbj|BAA13440.1|2e-117calcium dependent protein kinase [Ipomoea batatas]
JMSF052J10Sequence676012806 (3)dbj|BAA13440.1|1e-85calcium dependent protein kinase [Ipomoea batatas]906009954 (5)dbj|BAA13440.1|1e-148calcium dependent protein kinase [Ipomoea batatas]

Alignment

This contig is upended


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JMSF052J10+                                                               CTCGGGCT
                      ____________________________________________________________
consensus                                                                 CTCGGGCT
 
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JMSF052J10+           TCAAATCGCGGTGCATCACACCCATAAAATGGCAAGTATGAACAACATTGACTATAGACC
                      ____________________________________________________________
consensus             TCAAATCGCGGTGCATCACACCCATAAAATGGCAAGTATGAACAACATTGACTATAGACC
 
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JMSF052J10+           TGCAAAGAGAGGCGGCAGCCCTTTCGCTATAGTGGCCCTTAGCAATAATCCGATCGAAAA
                      ____________________________________________________________
consensus             TGCAAAGAGAGGCGGCAGCCCTTTCGCTATAGTGGCCCTTAGCAATAATCCGATCGAAAA
 
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JMSF052J10+           GCTCTCCCCCAGCACACAACTCCATCACAAGATACAGAATTAGCATCCTCATAAGCACCC
                      ____________________________________________________________
consensus             GCTCTCCCCCAGCACACAACTCCATCACAAGATACAGAATTAGCATCCTCATAAGCACCC
 
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JMSF052J10+           TTGAACTCAACAATATTAGGCTGCCCACTCAAGTGCTGCATAATCTGAACCTCCCTCCTC
JMFF031D22+                                                                      C
JMFF001J13+                                                                      C
                      ____________________________________________________________
consensus             TTGAACTCAACAATATTAGGCTGCCCACTCAAGTGCTGCATAATCTGAACCTCCCTCCTC
 
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JMSF052J10+           ATATCATCCTTATCCCCCTTGGTCACAAGCTTTTTCTTGGAAATTGACTTGCAGGCATAC
JMFF031D22+           ATATCATCCTTATCCCCCTTGGTCACAAGCTTTTTCTTGGAAATTGACTTGCAGGCATAC
JMFF001J13+           ATATCATCCTTATCCCCCTTGGTCACAAGCTTTTTCTTGGAAATTGACTTGCAGGCATAC
                      ____________________________________________________________
consensus             ATATCATCCTTATCCCCCTTGGTCACAAGCTTTTTCTTGGAAATTGACTTGCAGGCATAC
 
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JMSF052J10+           TGCTTACCAGTTGTAATCTCAGTACACAGATAGGTAACCCCAAATTGACCCCTACCCAGT
JMFF031D22+           TGCTTACCAGTTGTAATCTCAGTACACAGATAGGTAACCCCAAATTGACCCCTACCCAGT
JMFF001J13+           TGCTTACCAGTTGTAATCTCAGTACACAGATAGGTAACCCCAAATTGACCCCTACCCAGT
                      ____________________________________________________________
consensus             TGCTTACCAGTTGTAATCTCAGTACACAGATAGGTAACCCCAAATTGACCCCTACCCAGT
 
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JMSF052J10+           TCTTTCCCCAGACTGTAATGTGCCCTAACATCTTCATATGCCTTACCCAGAATTGCATCC
JMFF031D22+           TCTTTCCCCAAACTGTAATGTGCCCTAACATCTTCATATGCCTTACCCAGAATTGCATCC
JMFF001J13+           TCTTTCCCCAGACTGTAATGTGCCCTAACATCTTCATATGCCTTACCCAGAATTGCATCC
                      ____________________________________________________________
consensus             TCTTTCCCCAGACTGTAATGTGCCCTAACATCTTCATATGCCTTACCCAGAATTGCATCC
 
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JMSF052J10+           GACTTTGAAACTGGTTTTGAGATTGATGGTGGCCGTGTAGGCAGTCCAGCTCCCTGCCCA
JMFF031D22+           GACTTTGAAACTGGTTTTGAGATTGATGGTGGCCGTGTAGGCAGTCCAGCTCCCTGCCCA
JMFF001J13+           GACTTTGAAACTGGTTTTGAGATTGATGGTGGCCGTGTAGGCAGTCCAGCTCCCTGCCCA
                      ____________________________________________________________
consensus             GACTTTGAAACTGGTTTTGAGATTGATGGTGGCCGTGTAGGCAGTCCAGCTCCCTGCCCA
 
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JMSF052J10+           GGTGACTTTGTGTACTCAATGTGAGTCTGATGGGGTTGGCTTCCTCCTCCTCCATGCCCA
JMFF031D22+           GGTGACTTTGTGTACTCAATGTGAGTCTGATGGGGTTGGCTTCCTCCTCCTCCATGCCCA
JMFF001J13+           GGTGACTTTGTGTACTCAATGTGAGTCTGATGGGGTTGGCTTCCTCCTCCTCCATGCCCA
                      ____________________________________________________________
consensus             GGTGACTTTGTGTACTCAATGTGAGTCTGATGGGGTTGGCTTCCTCCTCCTCCATGCCCA
 
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JMSF052J10+           GCTTCTGATCTGTGCTTTTCACCATGCTTATGTCTGCTTGAACGGTTACCCATCTCTCTT
JMFF031D22+           GCTTCTGATCTGTGCTTTTCACCATGCTTATGTCTGCTTGAACGGTTACCCATCTCTCTT
JMFF001J13+           GCTTCTGATCTGTGCTTTTCACCATGCTTATGTCTGCTTGAACGGTTACCCATCTCTCTT
                      ____________________________________________________________
consensus             GCTTCTGATCTGTGCTTTTCACCATGCTTATGTCTGCTTGAACGGTTACCCATCTCTCTT
 
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JMSF052J10+           ACTCGGAAATTAAAAGAGAAGAAACGCCCAGCTGAATCCTCCAAGACTAATCAGAAAGGA
JMFF031D22+           ACTCGGAAATTAAAAGAGAAGAAACGCCCAGCTGAATCCTCCAAGACTAATCAGAAAGGA
JMFF001J13+           ACTCGGAAATTAAAAGAGAAGAAACGCCCAGCTGAATCCTCCAAGACTAATCAGAAAGGA
                      ____________________________________________________________
consensus             ACTCGGAAATTAAAAGAGAAGAAACGCCCAGCTGAATCCTCCAAGACTAATCAGAAAGGA
 
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JMSF052J10+           GGAA                                                        
JMFF031D22+           GGAACGTGAAGACTAGAGCAGCTTTGTATATTACAGTCGATTTACAGTATAAGACGTTGC
JMFF001J13+           GGAACGTGAAGACTAGAGCAGCTTTGTATATTACAGTCGATTTACAGTATAAGACGTTGT
                      ____________________________________________________________
consensus             GGAACGTGAAGACTAGAGCAGCTTTGTATATTACAGTCGATTTACAGTATAAGACGTTGT
 
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JMFF031D22+           CCGGTTT                                                     
JMFF001J13+           CCGGTTTAGATAGACCGGGGATTGGCCCTTCCAAGAAAAGGGGTGGAGAGAAGAAAGAAC
                      ____________________________________________________________
consensus             CCGGTTTAGATAGACCGGGGATTGGCCCTTCCAAGAAAAGGGGTGGAGAGAAGAAAGAAC