Contig 012805:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001C13Sequence457012805 (6)424013590 (2)
JMFF013P24Sequence595012805 (6)ref|XP_002526718.1|8e-36nucleic acid binding protein, putative [Ricinus communis] gb|EEF35632.1| nucleic780013590 (2)ref|XP_009618285.1|2e-57PREDICTED: zinc finger CCCH domain-containing protein 30 [Nicotiana tomentosifo
JMFS015B06Sequence492012805 (6)ref|XP_002526718.1|1e-09nucleic acid binding protein, putative [Ricinus communis] gb|EEF35632.1| nucleic
JMFS044B03Sequence626012805 (6)ref|XP_002526718.1|5e-21nucleic acid binding protein, putative [Ricinus communis] gb|EEF35632.1| nucleic
JMFS068E05Sequence614012805 (6)ref|XP_002526718.1|2e-35nucleic acid binding protein, putative [Ricinus communis] gb|EEF35632.1| nucleic
JMFS088C01Sequence615012805 (6)gb|KDO45407.1|1e-17hypothetical protein CISIN_1g006944mg [Citrus sinensis] gb|KDO45408.1| hypotheti

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF013P24+ AA
                      ____________________________________________________________
consensus AA
 
. : . : . : . : . : . :
JMFF013P24+ AGAAAGGATCAGTTTTAGAACATCAATGCTGCCATAAGTTGCAGCAACCATCAAAGGCGT
JMFS068E05+ AAGGATCAGTTTTAGAACATCAATGCTGCCATAAGTTGCAGCAACCATCAAAGGCGT
                      ____________________________________________________________
consensus AGAAAGGATCAGTTTTAGAACATCAATGCTGCCATAAGTTGCAGCAACCATCAAAGGCGT
 
. : . : . : . : . : . :
JMFF013P24+ TCTATGCTCAAGAACCATTTGCTTCGAGCCCTTTTGCCGCCCATACCACTGTCCAACTTC
JMFS015B06+ C
JMFS068E05+ TCTATGCTCAAGAACCATTTGCTTCGAGCCCTTTTGCCGCCCATACCACTGTCCAACTTC
JMFS044B03+ ATGCTCAAGAACCATTNGCTTCGAGCCCTTNTGCCGCCCATACCACTGTCCAACTTC
JMFS088C01+ TTCGAGCCCTTNTGCCGCCCATACCACTGTCCAACTTC
                      ____________________________________________________________
consensus TCTATGCTCAAGAACCATTTGCTTCGAGCCCTTTTGCCGCCCATACCACTGTCCAACTTC
 
. : . : . : . : . : . :
JMFF013P24+ ATCAATACTAGACGGATCACTGCCAATCCATCTCTTAACGCCTTCTATGTCATTGTTGGC
JMFS015B06+ ATCAATACTAGACGGATCACTGCCAATCCATCTATTAACGCCTTCTATGTCATTGTTGGC
JMFS068E05+ ATCAATACTAGACGGATCACTGCCAATCCATCTCTTAACGCCTTCTATGTCATTGTTGGC
JMFS044B03+ ATCAATACTAGACGGATCACTGCCAATCCATCTCTTAACGCCTTCTATGTCATTGTTGGC
JMFS088C01+ ATCAATACTAGACGGATCACTGCCAATCCATCTCTTAACGCCTTCTATGTCATTGTTGGC
                      ____________________________________________________________
consensus ATCAATACTAGACGGATCACTGCCAATCCATCTCTTAACGCCTTCTATGTCATTGTTGGC
 
. : . : . : . : . : . :
JMFF013P24+ AGCAAGTTCAAGCAAACTCGAAAAAGTATCCTCAGTTTCGACTGTCAAATGATTTATGTT
JMFS015B06+ AGCAAGTTCAAGCAAACTCGAAAAAGTATCCTCAGTTTCGACTGTCAAATGATTTATGTT
JMFS068E05+ AGCAAGTTCAAGCAAACTCGAAAAAGTATCCTCAGTTTCGACTGTCAAATGATTTATGTT
JMFS044B03+ AGCAAGTTCAAGCAAACTCGAAAAAGTATCCTCAGTTTCGACTGTCAAATGATTTATGTT
JMFS088C01+ AGCAAGTTCAAGCAAACTCGAAAAAGTATCCTCAGTTTCGACTGTCAAATGATTTATGTT
                      ____________________________________________________________
consensus AGCAAGTTCAAGCAAACTCGAAAAAGTATCCTCAGTTTCGACTGTCAAATGATTTATGTT
 
. : . : . : . : . : . :
JMFF013P24+ CATGATTGTGGCTAAACTATTATCAACTGTGATTCATATAACCTGGTTTCCAACAACTCT
JMFS015B06+ CATGATTGTGGCTAAACTATTATCAACGGTGATTCATATAACCTGGTTTCCAACAACTCT
JMFS068E05+ CATGATTGTGGCTAAACTATTATCAACGGTGATTCATATAACCTGGTTTCCAACAACTCT
JMFS044B03+ CATGATTGTGGCTAAACTATTATCAACGGTGATTCATATAACCTGGTTTCCAACAACTCT
JMFS088C01+ CATGATTGTGGCTAAACTATTATCAACGGTGATTCATATAACCTGGTTTCCAACAACTCT
JMFF001C13+ CAACGGTGATTCATATAACCTGGTTTCCAACAACTCT
                      ____________________________________________________________
consensus CATGATTGTGGCTAAACTATTATCAACGGTGATTCATATAACCTGGTTTCCAACAACTCT
 
. : . : . : . : . : . :
JMFF013P24+ AATCGATAGCACATACTTTCATCTCACGATCCAACATTTGTTTGTCTCCCCAGATTATAT
JMFS015B06+ AATCGATAGCACATACTTTCATCTCACGATCCAACATTTGTTTGTCTCCCCAGATTATAT
JMFS068E05+ AATCGATAGCACATACTTTCATCTCACGATCCAACATTTGTTTGTCTCCCCAGATTATAT
JMFS044B03+ AATCGATAGCACATACTTTCATCTCACGATCCAACATTTGTTTGTCTCCCCAGATTATAT
JMFS088C01+ AATCGATAGCACATACTTTCATCTCACGATCCAACATTTGTTTGTCTCCCCAGATTATAT
JMFF001C13+ AATCGATAGCACATACTTTCATCTCACGATCCAACATTTGTTTGTCTCCCCAGATTATAT
                      ____________________________________________________________
consensus AATCGATAGCACATACTTTCATCTCACGATCCAACATTTGTTTGTCTCCCCAGATTATAT
 
. : . : . : . : . : . :
JMFF013P24+ TCCCAGCTAGTGAGAAGAAAAAGAAGAGCCCTCCAGTGGCTGCAACTCCTCCATCTCTTG
JMFS015B06+ TCCCAGCTAGTGAGAAGAAAAAGAAGAGCCCTCCAGTGGCTGCAACTCCTCCATTTCTTG
JMFS068E05+ TCCCAGCTAGTGAGAAGAAAAAGAAGAGCCCTCCAGTGGCTGCAACTCCTCCATTTCTTG
JMFS044B03+ TCCCAGCTAGTGAGAAGAAAAAGAAGAGCCCTCCAGTGGCTGCAACTCCTCCATTTCTTG
JMFS088C01+ TCCCAGCTAGTGAGAAGAAAAAGAAGAGCCCTCCAGTGGCTGCAACTCCTCCATTTCTTG
JMFF001C13+ TCCCAGCTAGTGAGAAGAAAAAGAAGAGCCCTCCAGTGGCTGCAACTCCTCCATTTCTTG
                      ____________________________________________________________
consensus TCCCAGCTAGTGAGAAGAAAAAGAAGAGCCCTCCAGTGGCTGCAACTCCTCCATTTCTTG
 
. : . : . : . : . : . :
JMFF013P24+ TTCCTTTGCTCCTGTGGCTGTACCTATAGACAGAAGGGGCGGAAGTTTTGCAGATCTAGA
JMFS015B06+ TTCCTTTGCTCCTGTGGCTGTACCTATAGACAGAAGGGGCGGAAGTTTTGCAGATCTAGA
JMFS068E05+ TTCCTTTGCTCCTGTGGCTGTACCTATAGACAGAAGGGGCGGAAGTTTTGCAGATCTAGA
JMFS044B03+ TTCCTTTGCTCCTGTGGCTGTACCTATAGACAGAAGGGGCGGAAGTTTTGCAGATCTAGA
JMFS088C01+ TTCCTTTGCTCCTGTGGCTGTACCTATAGACAGAAGGGGCGGAAGTTTTGCAGATCTAGA
JMFF001C13+ TTCCTTTGCTCCTGTGGCTGTACCTATAGACAGAAGGGGCGGAAGTTTTGCAGATCTAGA
                      ____________________________________________________________
consensus TTCCTTTGCTCCTGTGGCTGTACCTATAGACAGAAGGGGCGGAAGTTTTGCAGATCTAGA
 
. : . : . : . : . : . :
JMFF013P24+ GAGAGAAAGAAGAGGAGAGGAACGAGAAAGTTGTGATAACCCAAGAAGATGGAGGAGGGG
JMFS015B06+ GAGAGAAAGAAGAGGAGAGGAACGAGAAAGTTGTGATAACCCAAGAAGATGGAGGAGGGG
JMFS068E05+ GAGAGAAAGAAGAGGAGAGGAACGAGAAAGTTGTGATAACCCAAGAAGATGGAGGAGGGG
JMFS044B03+ GAGAGAAAGAAGAGGAGAGGAACGAGAAAGTTGTGATAACCCAAGAAGATGGAGGAGGGG
JMFS088C01+ GAGAGAAAGAAGAGGAGAGGAACGAGAAAGTTGTGATAACCCAAGAAGATGGAGGAGGGG
JMFF001C13+ GAGAGAAAGAAGAGGAGAGGAACGAGAAAGTTGTGATAACCCAAGAAGATGGAGGAGGGG
                      ____________________________________________________________
consensus GAGAGAAAGAAGAGGAGAGGAACGAGAAAGTTGTGATAACCCAAGAAGATGGAGGAGGGG
 
. : . : . : . : . : . :
JMFF013P24+ GAGGAGGAAGAGGAGGAGCTGCTGCTGCTGCTTTTTTCTTCGCCATTTTCTAT
JMFS015B06+ GAGGAGGAAGAGGAGGAGCTGCTGCTGCTGCTTTTTTCTTCGCCATTTCCTATGCTCTCT
JMFS068E05+ GAGGAGGAAGAGGAGGAGCTGCTGCTGCTGCTTTTTTCTTCGCCATTTCCTATGCTCTCT
JMFS044B03+ GAGGAGGAAGAGGAGGAGCTGCTGCTGCTGCTTTTTTCTTCGCCATTTCCTATGCTCTCT
JMFS088C01+ GAGGAGGAAGAGGAGGAGCTGCTGCTGCTGCTTTTTTCTTCGCCATTTCCTATGCTCTCT
JMFF001C13+ GAGGAGGAAGAGGAGGAGCTGCTGCTGCTGCTTTTTTCTTCGCCATTTCCTATGCTCTCT
                      ____________________________________________________________
consensus GAGGAGGAAGAGGAGGAGCTGCTGCTGCTGCTTTTTTCTTCGCCATTTCCTATGCTCTCT
 
. : . : . : . : . : . :
JMFS015B06+ CTTTCTCTCTC
JMFS068E05+ CTTTCTCTCTCCCTTCT
JMFS044B03+ CTTTCTCTCTCCCTTCTTTTCTTTTTAACTGATGAATACCACCATTATTTTTAACAATTA
JMFS088C01+ CTTTCTCTCTCCCTTCTTTTCTTTTTAACTGATGAATACCACCATTATTTTTAACAATTA
JMFF001C13+ CTTTCTCTCTCCCTTCTTTTCTTTTTAACTGATGAATACCACCATTATTTTTAACAATTA
                      ____________________________________________________________
consensus CTTTCTCTCTCCCTTCTTTTCTTTTTAACTGATGAATACCACCATTATTTTTAACAATTA
 
. : . : . : . : . : . :
JMFS044B03+ TTACATTAATAATTTTAGTGCCACTACAG
JMFS088C01+ TTACATTAATAATTTTAGTGCCACTACAGACTAATTC
JMFF001C13+ TTACATTAATAATTTTAGTGCCACTACAGACTAATTCTCTTTCTCTCTCTCTCTCGTGTT
                      ____________________________________________________________
consensus TTACATTAATAATTTTAGTGCCACTACAGACTAATTCTCTTTCTCTCTCTCTCTCGTGTT